Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:16085001-18955111

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930444P10Rik 1 16065979 to 16093325 27346 - protein coding gene RIKEN cDNA 4930444P10 gene
Cpgi53 1 16092809 to 16093494 685 CpG island CpG island 53
Tssr11032 1 16093286 to 16093341 55 - TSS region transcription start site region 11032
Rpl7 1 16101295 to 16104433 3138 - protein coding gene ribosomal protein L7
Cpgi54 1 16104101 to 16106523 2422 CpG island CpG island 54
Tssr11033 1 16104163 to 16104204 41 - TSS region transcription start site region 11033
Tssr11034 1 16104385 to 16104392 7 - TSS region transcription start site region 11034
Tssr11035 1 16104396 to 16104435 39 - TSS region transcription start site region 11035
Tssr5993 1 16105330 to 16105359 29 + TSS region transcription start site region 5993
Tssr5994 1 16105370 to 16105379 9 + TSS region transcription start site region 5994
Tssr5995 1 16105394 to 16105410 16 + TSS region transcription start site region 5995
Tssr5996 1 16105856 to 16105870 14 + TSS region transcription start site region 5996
Rdh10 1 16105882 to 16132550 26668 + protein coding gene retinol dehydrogenase 10 (all-trans)
Tssr5997 1 16106364 to 16106377 13 + TSS region transcription start site region 5997
Tssr5998 1 16111349 to 16111370 21 + TSS region transcription start site region 5998
D1Mit119 1 16176457 to 16176602 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 119
Gm38249 1 16208197 to 16210517 2320 - unclassified gene predicted gene, 38249
Gm28095 1 16228506 to 16244062 15556 + antisense lncRNA gene predicted gene 28095
Stau2 1 16228803 to 16520182 291379 - protein coding gene staufen double-stranded RNA binding protein 2
Tssr5999 1 16253582 to 16253597 15 + TSS region transcription start site region 5999
Gm7568 1 16253587 to 16263525 9938 + antisense lncRNA gene predicted gene 7568
Tssr11036 1 16294892 to 16294897 5 - TSS region transcription start site region 11036
C130013N14Rik 1 16309437 to 16311722 2285 unclassified gene RIKEN cDNA C130013N14 gene
Tssr11037 1 16345473 to 16345487 14 - TSS region transcription start site region 11037
Cpgi55 1 16518533 to 16520192 1659 CpG island CpG island 55
Tssr11038 1 16519201 to 16519260 59 - TSS region transcription start site region 11038
Tssr11039 1 16519284 to 16519336 52 - TSS region transcription start site region 11039
Tssr11040 1 16520023 to 16520039 16 - TSS region transcription start site region 11040
Tssr11041 1 16520067 to 16520095 28 - TSS region transcription start site region 11041
Tssr11042 1 16520106 to 16520133 27 - TSS region transcription start site region 11042
Ube2w 1 16540788 to 16619415 78627 - protein coding gene ubiquitin-conjugating enzyme E2W (putative)
Tssr11043 1 16579121 to 16579132 11 - TSS region transcription start site region 11043
Gm46084 1 16591021 to 16596309 5288 - protein coding gene predicted gene, 46084
2310047N11Rik 1 16604593 to 16604935 342 unclassified gene RIKEN cDNA 2310047N11 gene
Tssr11044 1 16615502 to 16615506 4 - TSS region transcription start site region 11044
Cpgi56 1 16618471 to 16619580 1109 CpG island CpG island 56
Gm38342 1 16618560 to 16621539 2979 + unclassified gene predicted gene, 38342
Tssr6000 1 16618773 to 16618785 12 + TSS region transcription start site region 6000
Tssr11045 1 16619245 to 16619302 57 - TSS region transcription start site region 11045
Tssr11046 1 16619303 to 16619314 11 - TSS region transcription start site region 11046
Tssr11047 1 16619437 to 16619446 9 - TSS region transcription start site region 11047
Tssr6001 1 16619468 to 16619498 30 + TSS region transcription start site region 6001
Eloc 1 16641725 to 16657042 15317 - protein coding gene elongin C
Tssr11048 1 16645801 to 16645828 27 - TSS region transcription start site region 11048
Tssr11049 1 16655489 to 16655528 39 - TSS region transcription start site region 11049
Cpgi57 1 16656447 to 16657229 782 CpG island CpG island 57
Tssr11050 1 16656843 to 16656897 54 - TSS region transcription start site region 11050
Tssr11051 1 16656908 to 16656922 14 - TSS region transcription start site region 11051
Tssr6002 1 16656979 to 16656984 5 + TSS region transcription start site region 6002
Tssr11052 1 16657033 to 16657049 16 - TSS region transcription start site region 11052
D030040B21Rik 1 16657552 to 16662278 4726 + lincRNA gene RIKEN cDNA D030040B21 gene
Tssr6003 1 16661532 to 16661545 13 + TSS region transcription start site region 6003
Tssr6004 1 16661568 to 16661574 6 + TSS region transcription start site region 6004
Tssr13 1 16661608 to 16661615 7 + TSS region transcription start site region 13
Gm7654 1 16662980 to 16663662 682 - pseudogene predicted gene 7654
Cpgi58 1 16664996 to 16665690 694 CpG island CpG island 58
Tssr6005 1 16665180 to 16665185 5 + TSS region transcription start site region 6005
Tssr6006 1 16665189 to 16665264 75 + TSS region transcription start site region 6006
Tmem70 1 16665207 to 16678275 13068 + protein coding gene transmembrane protein 70
Tssr14 1 16665274 to 16665279 5 + TSS region transcription start site region 14
Tssr6007 1 16688032 to 16688073 41 + TSS region transcription start site region 6007
Tssr11053 1 16688143 to 16688156 13 - TSS region transcription start site region 11053
Tssr6008 1 16688405 to 16688458 53 + TSS region transcription start site region 6008
Ly96 1 16688456 to 16709605 21149 + protein coding gene lymphocyte antigen 96
Tssr6009 1 16688459 to 16688471 12 + TSS region transcription start site region 6009
Tssr6010 1 16688507 to 16688518 11 + TSS region transcription start site region 6010
Tssr11054 1 16688937 to 16688963 26 - TSS region transcription start site region 11054
Tssr6011 1 16691731 to 16691748 17 + TSS region transcription start site region 6011
Tssr6012 1 16709469 to 16709481 12 + TSS region transcription start site region 6012
D1Mit168 1 16746927 to 16747061 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 168
Gm29649 1 16758205 to 16758623 418 - pseudogene predicted gene 29649
Gm5828 1 16768279 to 16770138 1859 - pseudogene predicted gene 5828
Tssr11055 1 16770149 to 16770159 10 - TSS region transcription start site region 11055
Tssr6013 1 16814249 to 16814256 7 + TSS region transcription start site region 6013
Tssr6014 1 16814297 to 16814304 7 + TSS region transcription start site region 6014
Gm28376 1 16898185 to 17091631 193446 + antisense lncRNA gene predicted gene 28376
4921511E07Rik 1 16930970 to 16931796 826 + unclassified gene RIKEN cDNA 4921511E07 gene
Jph1 1 16964560 to 17097889 133329 - protein coding gene junctophilin 1
Tssr11056 1 16996937 to 16996940 3 - TSS region transcription start site region 11056
Tssr11057 1 17015452 to 17015456 4 - TSS region transcription start site region 11057
Tssr11058 1 17082458 to 17082462 4 - TSS region transcription start site region 11058
Cpgi59 1 17091546 to 17092089 543 CpG island CpG island 59
Cpgi60 1 17096653 to 17098194 1541 CpG island CpG island 60
Tssr11059 1 17097708 to 17097713 5 - TSS region transcription start site region 11059
Tssr15 1 17097749 to 17097753 4 - TSS region transcription start site region 15
Tssr11060 1 17097798 to 17097806 8 - TSS region transcription start site region 11060
Tssr11061 1 17097839 to 17097872 33 - TSS region transcription start site region 11061
Gm46085 1 17097969 to 17100793 2824 + lncRNA gene predicted gene, 46085
Tssr6015 1 17098090 to 17098130 40 + TSS region transcription start site region 6015
Gm31982 1 17098573 to 17124568 25995 - lncRNA gene predicted gene, 31982
Gm28783 1 17124747 to 17128956 4209 + lincRNA gene predicted gene 28783
Cpgi61 1 17145342 to 17145799 457 CpG island CpG island 61
Tssr6016 1 17145357 to 17145431 74 + TSS region transcription start site region 6016
Gdap1 1 17145373 to 17164271 18898 + protein coding gene ganglioside-induced differentiation-associated-protein 1
Gm28784 1 17168403 to 17173103 4700 + lincRNA gene predicted gene 28784
Gm39597 1 17202970 to 17205577 2607 + lncRNA gene predicted gene, 39597
Gm28785 1 17250114 to 17250492 378 - pseudogene predicted gene 28785
Tssr11062 1 17267033 to 17267039 6 - TSS region transcription start site region 11062
Gm5251 1 17394958 to 17395429 471 + pseudogene predicted gene 5251
Rbm6-ps1 1 17397412 to 17400281 2869 - pseudogene RNA binding motif protein 6, pseudogene 1
Gm6075 1 17429043 to 17429528 485 - pseudogene predicted gene 6075
Tssr11063 1 17429574 to 17429575 1 - TSS region transcription start site region 11063
Tssr16 1 17505270 to 17505272 2 + TSS region transcription start site region 16
Gm25166 1 17520001 to 17520111 110 + snoRNA gene predicted gene, 25166
Tssr6017 1 17601842 to 17601859 17 + TSS region transcription start site region 6017
Tssr6018 1 17601893 to 17601913 20 + TSS region transcription start site region 6018
Pi15 1 17601901 to 17630939 29038 + protein coding gene peptidase inhibitor 15
Tssr6019 1 17601914 to 17601934 20 + TSS region transcription start site region 6019
Tssr6020 1 17601951 to 17601954 3 + TSS region transcription start site region 6020
Gm28154 1 17615084 to 17641081 25997 - antisense lncRNA gene predicted gene 28154
Tssr6021 1 17629050 to 17629065 15 + TSS region transcription start site region 6021
Gm16070 1 17676027 to 17727646 51619 - antisense lncRNA gene predicted gene 16070
Tssr6022 1 17727034 to 17727061 27 + TSS region transcription start site region 6022
Crispld1 1 17727045 to 17766344 39299 + protein coding gene cysteine-rich secretory protein LCCL domain containing 1
Tssr6023 1 17727381 to 17727391 10 + TSS region transcription start site region 6023
Tssr6024 1 17727409 to 17727424 15 + TSS region transcription start site region 6024
Gm28153 1 17741915 to 17805417 63502 - antisense lncRNA gene predicted gene 28153
Tssr6025 1 17946997 to 17947007 10 + TSS region transcription start site region 6025
Gm7690 1 17947041 to 17948439 1398 + pseudogene predicted gene 7690
Gm18775 1 17993010 to 17999622 6612 - pseudogene predicted gene, 18775
Gm17969 1 17993825 to 17997483 3658 + pseudogene predicted gene, 17969
Gm28756 1 17994462 to 18059056 64594 - unclassified non-coding RNA gene predicted gene 28756
Gm28755 1 18005961 to 18016186 10225 - pseudogene predicted gene 28755
Gm45784 1 18048100 to 18058269 10169 - pseudogene predicted gene 45784
Cpgi62 1 18057728 to 18059061 1333 CpG island CpG island 62
Tssr11064 1 18058788 to 18058802 14 - TSS region transcription start site region 11064
Crisp4 1 18115191 to 18145902 30711 - protein coding gene cysteine-rich secretory protein 4
Tssr11065 1 18145895 to 18145922 27 - TSS region transcription start site region 11065
Defb44-ps 1 18210053 to 18223564 13511 - pseudogene defensin beta 44, pseudogene
Tssr11066 1 18223570 to 18223582 12 - TSS region transcription start site region 11066
Tssr11067 1 18223603 to 18223608 5 - TSS region transcription start site region 11067
Defb18 1 18236473 to 18237443 970 - protein coding gene defensin beta 18
Tssr11068 1 18237473 to 18237478 5 - TSS region transcription start site region 11068
D1Ertd230e 1 18247918 to 18248152 234 DNA segment DNA segment, Chr 1, ERATO Doi 230, expressed
Defb41 1 18250980 to 18265138 14158 - protein coding gene defensin beta 41
Gm17837 1 18262395 to 18263379 984 - pseudogene predicted gene, 17837
Tssr11069 1 18265130 to 18265141 11 - TSS region transcription start site region 11069
D1Mit230 1 18333801 to 18333927 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 230
Gm5252 1 18708428 to 18709336 908 + pseudogene predicted gene 5252