Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:159634174-161378211

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224 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnr 1 159523769 to 159931729 407960 + protein coding gene tenascin R
Gm10530 1 159614749 to 159684876 70127 + unclassified non-coding RNA gene predicted gene 10530
D1Mit159.1 1 159661856 to 159661974 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159.1
D1Mit159 1 159661973 to 159662164 191 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159
Hdlq14 1 159661973 to 159662164 191 QTL HDL QTL 14
Cpgi913 1 159670953 to 159671104 151 CpG island CpG island 913
Gm31348 1 159773914 to 159784250 10336 - lncRNA gene predicted gene, 31348
Tssr9625 1 159926053 to 159926065 12 + TSS region transcription start site region 9625
Tssr9626 1 159926233 to 159926252 19 + TSS region transcription start site region 9626
Gm38039 1 159928390 to 159931726 3336 - antisense lncRNA gene predicted gene, 38039
Tssr9627 1 159931065 to 159931076 11 + TSS region transcription start site region 9627
Tssr9628 1 159931080 to 159931092 12 + TSS region transcription start site region 9628
Gm31493 1 159976780 to 160025763 48983 - protein coding gene predicted gene, 31493
D1Pgn9 1 159980256 to 159980411 155 DNA segment DNA segment, Chr 1, Paigen 9
Gm24719 1 159983496 to 159983605 109 - snoRNA gene predicted gene, 24719
D1Pgn10 1 159984488 to 159984654 166 DNA segment DNA segment, Chr 1, Paigen 10
Tssr9629 1 159992572 to 159992574 2 + TSS region transcription start site region 9629
D1Pgn6 1 160000025 to 160000209 184 DNA segment DNA segment, Chr 1, Paigen 6
D1Pgn7 1 160021876 to 160022022 146 DNA segment DNA segment, Chr 1, Paigen 7
Gm31667 1 160024477 to 160025895 1418 + lncRNA gene predicted gene, 31667
D1Pgn3 1 160024517 to 160024656 139 DNA segment DNA segment, Chr 1, Paigen 3
Tssr14512 1 160025703 to 160025732 29 - TSS region transcription start site region 14512
Tssr14513 1 160025741 to 160025765 24 - TSS region transcription start site region 14513
D1Pgn4 1 160035104 to 160035323 219 DNA segment DNA segment, Chr 1, Paigen 4
D1Pgn8 1 160036278 to 160036487 209 DNA segment DNA segment, Chr 1, Paigen 7
Gm37294 1 160041700 to 160044208 2508 - lincRNA gene predicted gene, 37294
Tssr9630 1 160044055 to 160044084 29 + TSS region transcription start site region 9630
Cpgi914 1 160044254 to 160044768 514 CpG island CpG island 914
Tssr14514 1 160044289 to 160044319 30 - TSS region transcription start site region 14514
4930523C07Rik 1 160044368 to 160078587 34219 + protein coding gene RIKEN cDNA 4930523C07 gene
Tssr9631 1 160044374 to 160044452 78 + TSS region transcription start site region 9631
Tssr9632 1 160044473 to 160044484 11 + TSS region transcription start site region 9632
Tssr9633 1 160044488 to 160044497 9 + TSS region transcription start site region 9633
Tssr9634 1 160044517 to 160044524 7 + TSS region transcription start site region 9634
Tssr9635 1 160044564 to 160044590 26 + TSS region transcription start site region 9635
Tssr9636 1 160044604 to 160044621 17 + TSS region transcription start site region 9636
Tssr9637 1 160044653 to 160044701 48 + TSS region transcription start site region 9637
Tssr14515 1 160044739 to 160044759 20 - TSS region transcription start site region 14515
Tssr9638 1 160044897 to 160044923 26 + TSS region transcription start site region 9638
Tssr14516 1 160046969 to 160046971 2 - TSS region transcription start site region 14516
Tssr14517 1 160047498 to 160047508 10 - TSS region transcription start site region 14517
Tssr14518 1 160047510 to 160047517 7 - TSS region transcription start site region 14518
Tssr14519 1 160047734 to 160047748 14 - TSS region transcription start site region 14519
Tssr14520 1 160053070 to 160053081 11 - TSS region transcription start site region 14520
Tssr14521 1 160053096 to 160053110 14 - TSS region transcription start site region 14521
Tssr9639 1 160053856 to 160053870 14 + TSS region transcription start site region 9639
Tssr9640 1 160055067 to 160055072 5 + TSS region transcription start site region 9640
Tssr14522 1 160060639 to 160060650 11 - TSS region transcription start site region 14522
4930562F07Rik 1 160074735 to 160077985 3250 - lincRNA gene RIKEN cDNA 4930562F07 gene
Tssr14523 1 160077926 to 160077944 18 - TSS region transcription start site region 14523
D1Pgn12 1 160081429 to 160081625 196 DNA segment DNA segment, Chr 1, Paigen 12
Tnn 1 160085029 to 160153580 68551 - protein coding gene tenascin N
D1Pgn1 1 160096747 to 160096968 221 DNA segment DNA segment, Chr 1, Paigen 1
Tssr14524 1 160105725 to 160105731 6 - TSS region transcription start site region 14524
Tssr14525 1 160133698 to 160133708 10 - TSS region transcription start site region 14525
Cpgi915 1 160145971 to 160146383 412 CpG island CpG island 915
Tssr14526 1 160153538 to 160153550 12 - TSS region transcription start site region 14526
Tssr14527 1 160153571 to 160153585 14 - TSS region transcription start site region 14527
Cpgi916 1 160194903 to 160195580 677 CpG island CpG island 916
Tssr9641 1 160195237 to 160195266 29 + TSS region transcription start site region 9641
Mrps14 1 160195260 to 160201186 5926 + protein coding gene mitochondrial ribosomal protein S14
Cacybp 1 160202367 to 160212875 10508 - protein coding gene calcyclin binding protein
Tssr14528 1 160206190 to 160206200 10 - TSS region transcription start site region 14528
Cpgi917 1 160212282 to 160213518 1236 CpG island CpG island 917
Tssr14529 1 160212611 to 160212623 12 - TSS region transcription start site region 14529
Tssr14530 1 160212691 to 160212714 23 - TSS region transcription start site region 14530
Tssr14531 1 160212716 to 160212858 142 - TSS region transcription start site region 14531
Tssr14532 1 160212864 to 160212873 9 - TSS region transcription start site region 14532
4933417C20Rik 1 160212943 to 160214816 1873 + unclassified gene RIKEN cDNA 4933417C20 gene
Tssr9642 1 160213092 to 160213147 55 + TSS region transcription start site region 9642
Rabgap1l 1 160219174 to 160793211 574037 - protein coding gene RAB GTPase activating protein 1-like
Tssr14533 1 160232727 to 160232733 6 - TSS region transcription start site region 14533
Tssr9643 1 160246238 to 160246246 8 + TSS region transcription start site region 9643
Tssr14534 1 160247615 to 160247637 22 - TSS region transcription start site region 14534
Tssr14535 1 160247647 to 160247661 14 - TSS region transcription start site region 14535
Tssr14536 1 160247673 to 160247680 7 - TSS region transcription start site region 14536
Tssr14537 1 160250090 to 160250119 29 - TSS region transcription start site region 14537
Tssr14538 1 160251409 to 160251424 15 - TSS region transcription start site region 14538
Tssr14539 1 160251437 to 160251481 44 - TSS region transcription start site region 14539
Gm36975 1 160264324 to 160443072 178748 + antisense lncRNA gene predicted gene, 36975
Tssr14540 1 160287376 to 160287379 3 - TSS region transcription start site region 14540
C230094B09Rik 1 160288604 to 160293360 4756 unclassified gene RIKEN cDNA C230094B09 gene
Mir1927 1 160295864 to 160295972 108 - miRNA gene microRNA 1927
Tssr14541 1 160307304 to 160307322 18 - TSS region transcription start site region 14541
Tssr14542 1 160307324 to 160307349 25 - TSS region transcription start site region 14542
Tssr14543 1 160307351 to 160307391 40 - TSS region transcription start site region 14543
Tssr14544 1 160307400 to 160307419 19 - TSS region transcription start site region 14544
Tssr14545 1 160307420 to 160307437 17 - TSS region transcription start site region 14545
Tssr14546 1 160307439 to 160307452 13 - TSS region transcription start site region 14546
Tssr14547 1 160307465 to 160307482 17 - TSS region transcription start site region 14547
Tssr14548 1 160309086 to 160309115 29 - TSS region transcription start site region 14548
Tssr14549 1 160309158 to 160309178 20 - TSS region transcription start site region 14549
9430087J23Rik 1 160315344 to 160316495 1151 - unclassified gene RIKEN cDNA 9430087J23 gene
Gm37529 1 160321686 to 160327078 5392 - sense intronic lncRNA gene predicted gene, 37529
Cpgi918 1 160351844 to 160352123 279 CpG island CpG island 918
Tssr14550 1 160351864 to 160351934 70 - TSS region transcription start site region 14550
Tssr14551 1 160351991 to 160352005 14 - TSS region transcription start site region 14551
Tssr14552 1 160352013 to 160352075 62 - TSS region transcription start site region 14552
Tssr14553 1 160352085 to 160352116 31 - TSS region transcription start site region 14553
Actre11 1 160457095 to 162012496 1555401 QTL activity response to ethanol 11
D1Mit105 1 160457095 to 160457233 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 105
Bpq8 1 160457095 to 160457233 138 QTL blood pressure QTL 8
D1Dcr15 1 160457129 to 160457228 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 15
D1Mit503 1 160517369 to 160517469 100 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 503
Gm37212 1 160570161 to 160573810 3649 - unclassified gene predicted gene, 37212
Gpr52 1 160574725 to 160580799 6074 - protein coding gene G protein-coupled receptor 52
Tssr14554 1 160577893 to 160577904 11 - TSS region transcription start site region 14554
Gm37215 1 160589882 to 160591140 1258 - unclassified gene predicted gene, 37215
Gm38302 1 160604115 to 160606190 2075 - unclassified gene predicted gene, 38302
6720464F23Rik 1 160608955 to 160612450 3495 - unclassified gene RIKEN cDNA 6720464F23 gene
Gm23528 1 160645573 to 160645704 131 + snoRNA gene predicted gene, 23528
Gm37873 1 160648023 to 160650302 2279 - unclassified gene predicted gene, 37873
Gm37328 1 160726042 to 160726681 639 - sense intronic lncRNA gene predicted gene, 37328
Gm38329 1 160727734 to 160728160 426 - unclassified gene predicted gene, 38329
Gm38126 1 160755687 to 160759689 4002 + unclassified gene predicted gene, 38126
Tssr14555 1 160784104 to 160784108 4 - TSS region transcription start site region 14555
Cpgi919 1 160791924 to 160793278 1354 CpG island CpG island 919
Tssr9644 1 160792194 to 160792243 49 + TSS region transcription start site region 9644
Tssr14556 1 160792767 to 160792781 14 - TSS region transcription start site region 14556
Tssr14557 1 160792799 to 160792832 33 - TSS region transcription start site region 14557
Tssr14558 1 160792833 to 160792878 45 - TSS region transcription start site region 14558
Tssr14559 1 160792881 to 160792892 11 - TSS region transcription start site region 14559
Tssr14560 1 160792908 to 160792969 61 - TSS region transcription start site region 14560
Tssr14561 1 160793198 to 160793211 13 - TSS region transcription start site region 14561
Gm37083 1 160798682 to 160800819 2137 + lincRNA gene predicted gene, 37083
Tssr14562 1 160813147 to 160813152 5 - TSS region transcription start site region 14562
Gm38060 1 160839168 to 160839631 463 + lincRNA gene predicted gene, 38060
Tssr14563 1 160842647 to 160842650 3 - TSS region transcription start site region 14563
Gm24988 1 160876202 to 160876322 120 - snoRNA gene predicted gene, 24988
Tssr14564 1 160878646 to 160878678 32 - TSS region transcription start site region 14564
Tssr9645 1 160881544 to 160881561 17 + TSS region transcription start site region 9645
Gm6177 1 160893120 to 160893584 464 + pseudogene predicted gene 6177
Cpgi920 1 160905984 to 160907226 1242 CpG island CpG island 920
Tssr9646 1 160906372 to 160906460 88 + TSS region transcription start site region 9646
Rc3h1 1 160906418 to 160974978 68560 + protein coding gene RING CCCH (C3H) domains 1
Tssr9647 1 160906475 to 160906500 25 + TSS region transcription start site region 9647
Gm37052 1 160910789 to 160912619 1830 + unclassified gene predicted gene, 37052
Gm37809 1 160913472 to 160914402 930 + unclassified gene predicted gene, 37809
Gm37653 1 160915324 to 160918901 3577 + unclassified gene predicted gene, 37653
Tssr9648 1 160941135 to 160941141 6 + TSS region transcription start site region 9648
Tssr9649 1 160944713 to 160944729 16 + TSS region transcription start site region 9649
Tssr9650 1 160972609 to 160972613 4 + TSS region transcription start site region 9650
Tssr9651 1 160978576 to 160978590 14 + TSS region transcription start site region 9651
Serpinc1 1 160978606 to 161003015 24409 + protein coding gene serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
Tssr9652 1 160978607 to 160978618 11 + TSS region transcription start site region 9652
Tssr9653 1 160978625 to 160978656 31 + TSS region transcription start site region 9653
Tssr9654 1 160978659 to 160978664 5 + TSS region transcription start site region 9654
Tssr9655 1 160978670 to 160978680 10 + TSS region transcription start site region 9655
Gm37729 1 160985758 to 160986929 1171 + unclassified gene predicted gene, 37729
Tssr9656 1 160987103 to 160987117 14 + TSS region transcription start site region 9656
Tssr261 1 160987122 to 160987131 9 + TSS region transcription start site region 261
Tssr9657 1 160987482 to 160987518 36 + TSS region transcription start site region 9657
Tssr9658 1 160988931 to 160988942 11 + TSS region transcription start site region 9658
Tssr9659 1 160989372 to 160989388 16 + TSS region transcription start site region 9659
Tssr9660 1 160989408 to 160989430 22 + TSS region transcription start site region 9660
Tssr9661 1 160989472 to 160989482 10 + TSS region transcription start site region 9661
Tssr9662 1 160989494 to 160989512 18 + TSS region transcription start site region 9662
Tssr9663 1 160989544 to 160989561 17 + TSS region transcription start site region 9663
Tssr9664 1 160989571 to 160989588 17 + TSS region transcription start site region 9664
Tssr9665 1 160989590 to 160989627 37 + TSS region transcription start site region 9665
Tssr9666 1 160989649 to 160989682 33 + TSS region transcription start site region 9666
Tssr9667 1 160989695 to 160989702 7 + TSS region transcription start site region 9667
Tssr9668 1 160997634 to 160997649 15 + TSS region transcription start site region 9668
Tssr9669 1 160998082 to 160998087 5 + TSS region transcription start site region 9669
Gm37072 1 161001009 to 161001845 836 - unclassified gene predicted gene, 37072
Tssr9670 1 161001826 to 161001830 4 + TSS region transcription start site region 9670
Zbtb37 1 161008792 to 161034864 26072 - protein coding gene zinc finger and BTB domain containing 37
Gm37362 1 161030582 to 161031456 874 + antisense lncRNA gene predicted gene, 37362
Cpgi921 1 161034231 to 161035662 1431 CpG island CpG island 921
Tssr9671 1 161034581 to 161034614 33 + TSS region transcription start site region 9671
Tssr14565 1 161034794 to 161034832 38 - TSS region transcription start site region 14565
Tssr9672 1 161034903 to 161034921 18 + TSS region transcription start site region 9672
Tssr14566 1 161034959 to 161035004 45 - TSS region transcription start site region 14566
Tssr9673 1 161035162 to 161035169 7 + TSS region transcription start site region 9673
Gas5 1 161035166 to 161038537 3371 + lncRNA gene growth arrest specific 5
Gm26224 1 161035394 to 161035473 79 + snoRNA gene predicted gene, 26224
Tssr9674 1 161035399 to 161035437 38 + TSS region transcription start site region 9674
Tssr9675 1 161035523 to 161035542 19 + TSS region transcription start site region 9675
Tssr9676 1 161035848 to 161035852 4 + TSS region transcription start site region 9676
Gm22489 1 161035850 to 161035911 61 + snoRNA gene predicted gene, 22489
Tssr9677 1 161036053 to 161036066 13 + TSS region transcription start site region 9677
Gm22357 1 161036057 to 161036139 82 + snoRNA gene predicted gene, 22357
Gm23212 1 161036682 to 161036741 59 + snoRNA gene predicted gene, 23212
Snord78 1 161036984 to 161037049 65 + snoRNA gene small nucleolar RNA, C/D box 78
Mir5117 1 161037356 to 161037439 83 + miRNA gene microRNA 5117
Tssr9678 1 161037602 to 161037613 11 + TSS region transcription start site region 9678
Snord80 1 161037604 to 161037680 76 + snoRNA gene small nucleolar RNA, C/D box 80
Snord47 1 161038092 to 161038156 64 + snoRNA gene small nucleolar RNA, C/D box 47
Gm25789 1 161038308 to 161038383 75 + snoRNA gene predicted gene, 25789
Tssr14567 1 161038530 to 161038537 7 - TSS region transcription start site region 14567
Dars2 1 161040601 to 161070658 30057 - protein coding gene aspartyl-tRNA synthetase 2 (mitochondrial)
Gm37634 1 161040620 to 161041414 794 + antisense lncRNA gene predicted gene, 37634
Cpgi922 1 161070141 to 161071164 1023 CpG island CpG island 922
Tssr14568 1 161070613 to 161070674 61 - TSS region transcription start site region 14568
Cenpl 1 161070767 to 161086724 15957 + protein coding gene centromere protein L
Tssr9679 1 161070924 to 161071006 82 + TSS region transcription start site region 9679
Tssr14569 1 161071195 to 161071232 37 - TSS region transcription start site region 14569
Tssr14570 1 161071405 to 161071417 12 - TSS region transcription start site region 14570
Klhl20 1 161088375 to 161131510 43135 - protein coding gene kelch-like 20
Cpgi923 1 161131051 to 161131652 601 CpG island CpG island 923