Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:158968769-160486729

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq5 1 150730586 to 159479894 8749308 QTL conditioned fear QTL 5
Tlln 1 155962068 to 159562802 3600734 QTL tail length
Pappa2 1 158711727 to 158980490 268763 - protein coding gene pappalysin 2
1600012P17Rik 1 158967701 to 158980463 12762 - lincRNA gene RIKEN cDNA 1600012P17 gene
Tssr14504 1 158968826 to 158968832 6 - TSS region transcription start site region 14504
Tssr14505 1 158969507 to 158969517 10 - TSS region transcription start site region 14505
Tssr14506 1 158969688 to 158969696 8 - TSS region transcription start site region 14506
Tssr14507 1 158969700 to 158969707 7 - TSS region transcription start site region 14507
Tssr14508 1 158969743 to 158969749 6 - TSS region transcription start site region 14508
Tssr9608 1 158969810 to 158969835 25 + TSS region transcription start site region 9608
Tssr14509 1 158980452 to 158980469 17 - TSS region transcription start site region 14509
Gm39687 1 158988188 to 159042278 54090 - lncRNA gene predicted gene, 39687
Tssr14510 1 159030959 to 159030969 10 - TSS region transcription start site region 14510
4930562F17Rik 1 159134272 to 159166387 32115 + lincRNA gene RIKEN cDNA 4930562F17 gene
Gm4953 1 159168160 to 159168642 482 - pseudogene predicted pseudogene 4953
Tssr14511 1 159168685 to 159168689 4 - TSS region transcription start site region 14511
Gm7430 1 159209095 to 159211020 1925 - pseudogene predicted gene 7430
Cpgi912 1 159231742 to 159233050 1308 CpG island CpG island 912
Tssr9609 1 159232159 to 159232232 73 + TSS region transcription start site region 9609
Tssr9610 1 159232241 to 159232252 11 + TSS region transcription start site region 9610
Tssr9611 1 159232262 to 159232281 19 + TSS region transcription start site region 9611
Tssr9612 1 159232299 to 159232320 21 + TSS region transcription start site region 9612
Cop1 1 159232320 to 159347640 115320 + protein coding gene COP1, E3 ubiquitin ligase
D1Ertd475e 1 159234406 to 159234631 225 DNA segment DNA segment, Chr 1, ERATO Doi 475, expressed
Gm37115 1 159235710 to 159238558 2848 + unclassified gene predicted gene, 37115
Tssr9613 1 159241304 to 159241319 15 + TSS region transcription start site region 9613
Tssr9614 1 159256748 to 159256761 13 + TSS region transcription start site region 9614
Tssr9615 1 159268517 to 159268521 4 + TSS region transcription start site region 9615
Tssr9616 1 159275999 to 159276008 9 + TSS region transcription start site region 9616
Tssr9617 1 159276202 to 159276220 18 + TSS region transcription start site region 9617
9130025I19Rik 1 159289058 to 159289806 748 unclassified gene RIKEN cDNA 9130025I19 gene
Gm21053 1 159293805 to 159294189 384 + pseudogene predicted gene, 21053
Tssr9618 1 159310108 to 159310125 17 + TSS region transcription start site region 9618
Tssr9619 1 159310329 to 159310340 11 + TSS region transcription start site region 9619
Tssr9620 1 159313785 to 159313786 1 + TSS region transcription start site region 9620
Gm37088 1 159337414 to 159337819 405 - unclassified gene predicted gene, 37088
Scarna3a 1 159340307 to 159340424 117 + snoRNA gene small Cajal body-specific RNA 3A
Mir1843b 1 159340358 to 159340423 65 + miRNA gene microRNA 1843b
Tssr9621 1 159341986 to 159341989 3 + TSS region transcription start site region 9621
Gm31256 1 159378404 to 159378909 505 + pseudogene predicted gene, 31256
Gm37757 1 159428960 to 159429169 209 + pseudogene predicted gene, 37757
Tssr9622 1 159523768 to 159523873 105 + TSS region transcription start site region 9622
Tnr 1 159523769 to 159931729 407960 + protein coding gene tenascin R
Tssr9623 1 159523876 to 159523895 19 + TSS region transcription start site region 9623
D1Mit219 1 159562662 to 159562802 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 219
Gm37731 1 159595148 to 159597384 2236 + unclassified gene predicted gene, 37731
Tssr9624 1 159608763 to 159608766 3 + TSS region transcription start site region 9624
Gm10530 1 159614749 to 159684876 70127 + unclassified non-coding RNA gene predicted gene 10530
D1Mit159.1 1 159661856 to 159661974 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159.1
D1Mit159 1 159661973 to 159662164 191 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159
Hdlq14 1 159661973 to 159662164 191 QTL HDL QTL 14
Cpgi913 1 159670953 to 159671104 151 CpG island CpG island 913
Gm31348 1 159773914 to 159784250 10336 - lncRNA gene predicted gene, 31348
Tssr9625 1 159926053 to 159926065 12 + TSS region transcription start site region 9625
Tssr9626 1 159926233 to 159926252 19 + TSS region transcription start site region 9626
Gm38039 1 159928390 to 159931726 3336 - antisense lncRNA gene predicted gene, 38039
Tssr9627 1 159931065 to 159931076 11 + TSS region transcription start site region 9627
Tssr9628 1 159931080 to 159931092 12 + TSS region transcription start site region 9628
Gm31493 1 159976780 to 160025763 48983 - protein coding gene predicted gene, 31493
D1Pgn9 1 159980256 to 159980411 155 DNA segment DNA segment, Chr 1, Paigen 9
Gm24719 1 159983496 to 159983605 109 - snoRNA gene predicted gene, 24719
D1Pgn10 1 159984488 to 159984654 166 DNA segment DNA segment, Chr 1, Paigen 10
Tssr9629 1 159992572 to 159992574 2 + TSS region transcription start site region 9629
D1Pgn6 1 160000025 to 160000209 184 DNA segment DNA segment, Chr 1, Paigen 6
D1Pgn7 1 160021876 to 160022022 146 DNA segment DNA segment, Chr 1, Paigen 7
Gm31667 1 160024477 to 160025895 1418 + lncRNA gene predicted gene, 31667
D1Pgn3 1 160024517 to 160024656 139 DNA segment DNA segment, Chr 1, Paigen 3
Tssr14512 1 160025703 to 160025732 29 - TSS region transcription start site region 14512
Tssr14513 1 160025741 to 160025765 24 - TSS region transcription start site region 14513
D1Pgn4 1 160035104 to 160035323 219 DNA segment DNA segment, Chr 1, Paigen 4
D1Pgn8 1 160036278 to 160036487 209 DNA segment DNA segment, Chr 1, Paigen 7
Gm37294 1 160041700 to 160044208 2508 - lincRNA gene predicted gene, 37294
Tssr9630 1 160044055 to 160044084 29 + TSS region transcription start site region 9630
Cpgi914 1 160044254 to 160044768 514 CpG island CpG island 914
Tssr14514 1 160044289 to 160044319 30 - TSS region transcription start site region 14514
4930523C07Rik 1 160044368 to 160078587 34219 + protein coding gene RIKEN cDNA 4930523C07 gene
Tssr9631 1 160044374 to 160044452 78 + TSS region transcription start site region 9631
Tssr9632 1 160044473 to 160044484 11 + TSS region transcription start site region 9632
Tssr9633 1 160044488 to 160044497 9 + TSS region transcription start site region 9633
Tssr9634 1 160044517 to 160044524 7 + TSS region transcription start site region 9634
Tssr9635 1 160044564 to 160044590 26 + TSS region transcription start site region 9635
Tssr9636 1 160044604 to 160044621 17 + TSS region transcription start site region 9636
Tssr9637 1 160044653 to 160044701 48 + TSS region transcription start site region 9637
Tssr14515 1 160044739 to 160044759 20 - TSS region transcription start site region 14515
Tssr9638 1 160044897 to 160044923 26 + TSS region transcription start site region 9638
Tssr14516 1 160046969 to 160046971 2 - TSS region transcription start site region 14516
Tssr14517 1 160047498 to 160047508 10 - TSS region transcription start site region 14517
Tssr14518 1 160047510 to 160047517 7 - TSS region transcription start site region 14518
Tssr14519 1 160047734 to 160047748 14 - TSS region transcription start site region 14519
Tssr14520 1 160053070 to 160053081 11 - TSS region transcription start site region 14520
Tssr14521 1 160053096 to 160053110 14 - TSS region transcription start site region 14521
Tssr9639 1 160053856 to 160053870 14 + TSS region transcription start site region 9639
Tssr9640 1 160055067 to 160055072 5 + TSS region transcription start site region 9640
Tssr14522 1 160060639 to 160060650 11 - TSS region transcription start site region 14522
4930562F07Rik 1 160074735 to 160077985 3250 - lincRNA gene RIKEN cDNA 4930562F07 gene
Tssr14523 1 160077926 to 160077944 18 - TSS region transcription start site region 14523
D1Pgn12 1 160081429 to 160081625 196 DNA segment DNA segment, Chr 1, Paigen 12
Tnn 1 160085029 to 160153580 68551 - protein coding gene tenascin N
D1Pgn1 1 160096747 to 160096968 221 DNA segment DNA segment, Chr 1, Paigen 1
Tssr14524 1 160105725 to 160105731 6 - TSS region transcription start site region 14524
Tssr14525 1 160133698 to 160133708 10 - TSS region transcription start site region 14525
Cpgi915 1 160145971 to 160146383 412 CpG island CpG island 915
Tssr14526 1 160153538 to 160153550 12 - TSS region transcription start site region 14526
Tssr14527 1 160153571 to 160153585 14 - TSS region transcription start site region 14527
Cpgi916 1 160194903 to 160195580 677 CpG island CpG island 916
Tssr9641 1 160195237 to 160195266 29 + TSS region transcription start site region 9641
Mrps14 1 160195260 to 160201186 5926 + protein coding gene mitochondrial ribosomal protein S14
Cacybp 1 160202367 to 160212875 10508 - protein coding gene calcyclin binding protein
Tssr14528 1 160206190 to 160206200 10 - TSS region transcription start site region 14528
Cpgi917 1 160212282 to 160213518 1236 CpG island CpG island 917
Tssr14529 1 160212611 to 160212623 12 - TSS region transcription start site region 14529
Tssr14530 1 160212691 to 160212714 23 - TSS region transcription start site region 14530
Tssr14531 1 160212716 to 160212858 142 - TSS region transcription start site region 14531
Tssr14532 1 160212864 to 160212873 9 - TSS region transcription start site region 14532
4933417C20Rik 1 160212943 to 160214816 1873 + unclassified gene RIKEN cDNA 4933417C20 gene
Tssr9642 1 160213092 to 160213147 55 + TSS region transcription start site region 9642
Rabgap1l 1 160219174 to 160793211 574037 - protein coding gene RAB GTPase activating protein 1-like
Tssr14533 1 160232727 to 160232733 6 - TSS region transcription start site region 14533
Tssr9643 1 160246238 to 160246246 8 + TSS region transcription start site region 9643
Tssr14534 1 160247615 to 160247637 22 - TSS region transcription start site region 14534
Tssr14535 1 160247647 to 160247661 14 - TSS region transcription start site region 14535
Tssr14536 1 160247673 to 160247680 7 - TSS region transcription start site region 14536
Tssr14537 1 160250090 to 160250119 29 - TSS region transcription start site region 14537
Tssr14538 1 160251409 to 160251424 15 - TSS region transcription start site region 14538
Tssr14539 1 160251437 to 160251481 44 - TSS region transcription start site region 14539
Gm36975 1 160264324 to 160443072 178748 + antisense lncRNA gene predicted gene, 36975
Tssr14540 1 160287376 to 160287379 3 - TSS region transcription start site region 14540
C230094B09Rik 1 160288604 to 160293360 4756 unclassified gene RIKEN cDNA C230094B09 gene
Mir1927 1 160295864 to 160295972 108 - miRNA gene microRNA 1927
Tssr14541 1 160307304 to 160307322 18 - TSS region transcription start site region 14541
Tssr14542 1 160307324 to 160307349 25 - TSS region transcription start site region 14542
Tssr14543 1 160307351 to 160307391 40 - TSS region transcription start site region 14543
Tssr14544 1 160307400 to 160307419 19 - TSS region transcription start site region 14544
Tssr14545 1 160307420 to 160307437 17 - TSS region transcription start site region 14545
Tssr14546 1 160307439 to 160307452 13 - TSS region transcription start site region 14546
Tssr14547 1 160307465 to 160307482 17 - TSS region transcription start site region 14547
Tssr14548 1 160309086 to 160309115 29 - TSS region transcription start site region 14548
Tssr14549 1 160309158 to 160309178 20 - TSS region transcription start site region 14549
9430087J23Rik 1 160315344 to 160316495 1151 - unclassified gene RIKEN cDNA 9430087J23 gene
Gm37529 1 160321686 to 160327078 5392 - sense intronic lncRNA gene predicted gene, 37529
Cpgi918 1 160351844 to 160352123 279 CpG island CpG island 918
Tssr14550 1 160351864 to 160351934 70 - TSS region transcription start site region 14550
Tssr14551 1 160351991 to 160352005 14 - TSS region transcription start site region 14551
Tssr14552 1 160352013 to 160352075 62 - TSS region transcription start site region 14552
Tssr14553 1 160352085 to 160352116 31 - TSS region transcription start site region 14553
Bpq8 1 160457095 to 160457233 138 QTL blood pressure QTL 8
D1Mit105 1 160457095 to 160457233 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 105
Actre11 1 160457095 to 162012496 1555401 QTL activity response to ethanol 11
D1Dcr15 1 160457129 to 160457228 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 15