Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:158635307-160045424

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq5 1 150730586 to 159479894 8749308 QTL conditioned fear QTL 5
Tlln 1 155962068 to 159562802 3600734 QTL tail length
Astn1 1 158362273 to 158691781 329508 + protein coding gene astrotactin 1
Tssr9606 1 158691304 to 158691315 11 + TSS region transcription start site region 9606
Pappa2 1 158711727 to 158980490 268763 - protein coding gene pappalysin 2
Tssr14495 1 158712863 to 158712871 8 - TSS region transcription start site region 14495
Tssr14496 1 158712890 to 158712895 5 - TSS region transcription start site region 14496
Tssr14497 1 158712930 to 158712941 11 - TSS region transcription start site region 14497
Tssr14498 1 158822816 to 158822820 4 - TSS region transcription start site region 14498
Tssr14499 1 158828931 to 158828937 6 - TSS region transcription start site region 14499
Tssr14500 1 158887782 to 158887784 2 - TSS region transcription start site region 14500
Cpgi911 1 158935971 to 158936279 308 CpG island CpG island 911
Tssr14501 1 158953490 to 158953493 3 - TSS region transcription start site region 14501
Tssr14502 1 158958169 to 158958180 11 - TSS region transcription start site region 14502
Tssr9607 1 158958332 to 158958335 3 + TSS region transcription start site region 9607
1600012P17Rik 1 158967701 to 158980463 12762 - lincRNA gene RIKEN cDNA 1600012P17 gene
Tssr14503 1 158968478 to 158968482 4 - TSS region transcription start site region 14503
Tssr14504 1 158968826 to 158968832 6 - TSS region transcription start site region 14504
Tssr14505 1 158969507 to 158969517 10 - TSS region transcription start site region 14505
Tssr14506 1 158969688 to 158969696 8 - TSS region transcription start site region 14506
Tssr14507 1 158969700 to 158969707 7 - TSS region transcription start site region 14507
Tssr14508 1 158969743 to 158969749 6 - TSS region transcription start site region 14508
Tssr9608 1 158969810 to 158969835 25 + TSS region transcription start site region 9608
Tssr14509 1 158980452 to 158980469 17 - TSS region transcription start site region 14509
Gm39687 1 158988188 to 159042278 54090 - lncRNA gene predicted gene, 39687
Tssr14510 1 159030959 to 159030969 10 - TSS region transcription start site region 14510
4930562F17Rik 1 159134272 to 159166387 32115 + lincRNA gene RIKEN cDNA 4930562F17 gene
Gm4953 1 159168160 to 159168642 482 - pseudogene predicted pseudogene 4953
Tssr14511 1 159168685 to 159168689 4 - TSS region transcription start site region 14511
Gm7430 1 159209095 to 159211020 1925 - pseudogene predicted gene 7430
Cpgi912 1 159231742 to 159233050 1308 CpG island CpG island 912
Tssr9609 1 159232159 to 159232232 73 + TSS region transcription start site region 9609
Tssr9610 1 159232241 to 159232252 11 + TSS region transcription start site region 9610
Tssr9611 1 159232262 to 159232281 19 + TSS region transcription start site region 9611
Tssr9612 1 159232299 to 159232320 21 + TSS region transcription start site region 9612
Cop1 1 159232320 to 159347640 115320 + protein coding gene COP1, E3 ubiquitin ligase
D1Ertd475e 1 159234406 to 159234631 225 DNA segment DNA segment, Chr 1, ERATO Doi 475, expressed
Gm37115 1 159235710 to 159238558 2848 + unclassified gene predicted gene, 37115
Tssr9613 1 159241304 to 159241319 15 + TSS region transcription start site region 9613
Tssr9614 1 159256748 to 159256761 13 + TSS region transcription start site region 9614
Tssr9615 1 159268517 to 159268521 4 + TSS region transcription start site region 9615
Tssr9616 1 159275999 to 159276008 9 + TSS region transcription start site region 9616
Tssr9617 1 159276202 to 159276220 18 + TSS region transcription start site region 9617
9130025I19Rik 1 159289058 to 159289806 748 unclassified gene RIKEN cDNA 9130025I19 gene
Gm21053 1 159293805 to 159294189 384 + pseudogene predicted gene, 21053
Tssr9618 1 159310108 to 159310125 17 + TSS region transcription start site region 9618
Tssr9619 1 159310329 to 159310340 11 + TSS region transcription start site region 9619
Tssr9620 1 159313785 to 159313786 1 + TSS region transcription start site region 9620
Gm37088 1 159337414 to 159337819 405 - unclassified gene predicted gene, 37088
Scarna3a 1 159340307 to 159340424 117 + snoRNA gene small Cajal body-specific RNA 3A
Mir1843b 1 159340358 to 159340423 65 + miRNA gene microRNA 1843b
Tssr9621 1 159341986 to 159341989 3 + TSS region transcription start site region 9621
Gm31256 1 159378404 to 159378909 505 + pseudogene predicted gene, 31256
Gm37757 1 159428960 to 159429169 209 + pseudogene predicted gene, 37757
Tssr9622 1 159523768 to 159523873 105 + TSS region transcription start site region 9622
Tnr 1 159523769 to 159931729 407960 + protein coding gene tenascin R
Tssr9623 1 159523876 to 159523895 19 + TSS region transcription start site region 9623
D1Mit219 1 159562662 to 159562802 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 219
Gm37731 1 159595148 to 159597384 2236 + unclassified gene predicted gene, 37731
Tssr9624 1 159608763 to 159608766 3 + TSS region transcription start site region 9624
Gm10530 1 159614749 to 159684876 70127 + unclassified non-coding RNA gene predicted gene 10530
D1Mit159.1 1 159661856 to 159661974 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159.1
Hdlq14 1 159661973 to 159662164 191 QTL HDL QTL 14
D1Mit159 1 159661973 to 159662164 191 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159
Cpgi913 1 159670953 to 159671104 151 CpG island CpG island 913
Gm31348 1 159773914 to 159784250 10336 - lncRNA gene predicted gene, 31348
Tssr9625 1 159926053 to 159926065 12 + TSS region transcription start site region 9625
Tssr9626 1 159926233 to 159926252 19 + TSS region transcription start site region 9626
Gm38039 1 159928390 to 159931726 3336 - antisense lncRNA gene predicted gene, 38039
Tssr9627 1 159931065 to 159931076 11 + TSS region transcription start site region 9627
Tssr9628 1 159931080 to 159931092 12 + TSS region transcription start site region 9628
Gm31493 1 159976780 to 160025763 48983 - protein coding gene predicted gene, 31493
D1Pgn9 1 159980256 to 159980411 155 DNA segment DNA segment, Chr 1, Paigen 9
Gm24719 1 159983496 to 159983605 109 - snoRNA gene predicted gene, 24719
D1Pgn10 1 159984488 to 159984654 166 DNA segment DNA segment, Chr 1, Paigen 10
Tssr9629 1 159992572 to 159992574 2 + TSS region transcription start site region 9629
D1Pgn6 1 160000025 to 160000209 184 DNA segment DNA segment, Chr 1, Paigen 6
D1Pgn7 1 160021876 to 160022022 146 DNA segment DNA segment, Chr 1, Paigen 7
Gm31667 1 160024477 to 160025895 1418 + lncRNA gene predicted gene, 31667
D1Pgn3 1 160024517 to 160024656 139 DNA segment DNA segment, Chr 1, Paigen 3
Tssr14512 1 160025703 to 160025732 29 - TSS region transcription start site region 14512
Tssr14513 1 160025741 to 160025765 24 - TSS region transcription start site region 14513
D1Pgn4 1 160035104 to 160035323 219 DNA segment DNA segment, Chr 1, Paigen 4
D1Pgn8 1 160036278 to 160036487 209 DNA segment DNA segment, Chr 1, Paigen 7
Gm37294 1 160041700 to 160044208 2508 - lincRNA gene predicted gene, 37294
Tssr9630 1 160044055 to 160044084 29 + TSS region transcription start site region 9630
Cpgi914 1 160044254 to 160044768 514 CpG island CpG island 914
Tssr14514 1 160044289 to 160044319 30 - TSS region transcription start site region 14514
4930523C07Rik 1 160044368 to 160078587 34219 + protein coding gene RIKEN cDNA 4930523C07 gene
Tssr9631 1 160044374 to 160044452 78 + TSS region transcription start site region 9631
Tssr9632 1 160044473 to 160044484 11 + TSS region transcription start site region 9632
Tssr9633 1 160044488 to 160044497 9 + TSS region transcription start site region 9633
Tssr9634 1 160044517 to 160044524 7 + TSS region transcription start site region 9634
Tssr9635 1 160044564 to 160044590 26 + TSS region transcription start site region 9635
Tssr9636 1 160044604 to 160044621 17 + TSS region transcription start site region 9636
Tssr9637 1 160044653 to 160044701 48 + TSS region transcription start site region 9637
Tssr14515 1 160044739 to 160044759 20 - TSS region transcription start site region 14515
Tssr9638 1 160044897 to 160044923 26 + TSS region transcription start site region 9638