Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:158239700-159699707

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pas8 1 147249520 to 158405702 11156182 QTL pulmonary adenoma susceptibility 8
Cfq5 1 150730586 to 159479894 8749308 QTL conditioned fear QTL 5
Tlln 1 155962068 to 159562802 3600734 QTL tail length
Brinp2 1 158245269 to 158356326 111057 - protein coding gene bone morphogenic protein/retinoic acid inducible neural-specific 2
D1Mit227 1 158267440 to 158267586 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 227
Wbcq5 1 158267440 to 158267586 146 QTL white blood cell QTL 5
D1Mit227.2 1 158267621 to 158267763 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 227.2
Tssr14492 1 158355240 to 158355243 3 - TSS region transcription start site region 14492
Cpgi909 1 158355706 to 158356574 868 CpG island CpG island 909
Tssr14493 1 158356258 to 158356313 55 - TSS region transcription start site region 14493
Tssr14494 1 158356324 to 158356344 20 - TSS region transcription start site region 14494
Tssr9598 1 158362089 to 158362102 13 + TSS region transcription start site region 9598
Tssr9599 1 158362180 to 158362192 12 + TSS region transcription start site region 9599
Tssr9600 1 158362261 to 158362296 35 + TSS region transcription start site region 9600
Astn1 1 158362273 to 158691781 329508 + protein coding gene astrotactin 1
Tssr9601 1 158362330 to 158362411 81 + TSS region transcription start site region 9601
Tssr9602 1 158362418 to 158362428 10 + TSS region transcription start site region 9602
Tssr9603 1 158362497 to 158362511 14 + TSS region transcription start site region 9603
Cpgi910 1 158362518 to 158363020 502 CpG island CpG island 910
Tssr9604 1 158362521 to 158362585 64 + TSS region transcription start site region 9604
Gm37861 1 158375936 to 158378804 2868 + unclassified gene predicted gene, 37861
D1Mit33 1 158405603 to 158405702 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 33
Pcir1 1 158405603 to 158405702 99 QTL periosteal circumference 1
Stia1 1 158405603 to 158405702 99 QTL serum transfer induced arthritis 1
Rd6m1 1 158405603 to 158405702 99 QTL retinal degeneration 6 modifier 1
Femwf12 1 158405603 to 158405702 99 QTL femur work to failure 12
Gm37679 1 158485032 to 158554299 69267 - antisense lncRNA gene predicted gene, 37679
Mir488 1 158505625 to 158505733 108 + miRNA gene microRNA 488
D1Mit349 1 158526229 to 158526342 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 349
Gm37367 1 158534807 to 158537408 2601 + unclassified gene predicted gene, 37367
Gm37848 1 158548864 to 158551966 3102 - unclassified gene predicted gene, 37848
Tssr9605 1 158551586 to 158551589 3 + TSS region transcription start site region 9605
Tssr9606 1 158691304 to 158691315 11 + TSS region transcription start site region 9606
Pappa2 1 158711727 to 158980490 268763 - protein coding gene pappalysin 2
Tssr14495 1 158712863 to 158712871 8 - TSS region transcription start site region 14495
Tssr14496 1 158712890 to 158712895 5 - TSS region transcription start site region 14496
Tssr14497 1 158712930 to 158712941 11 - TSS region transcription start site region 14497
Tssr14498 1 158822816 to 158822820 4 - TSS region transcription start site region 14498
Tssr14499 1 158828931 to 158828937 6 - TSS region transcription start site region 14499
Tssr14500 1 158887782 to 158887784 2 - TSS region transcription start site region 14500
Cpgi911 1 158935971 to 158936279 308 CpG island CpG island 911
Tssr14501 1 158953490 to 158953493 3 - TSS region transcription start site region 14501
Tssr14502 1 158958169 to 158958180 11 - TSS region transcription start site region 14502
Tssr9607 1 158958332 to 158958335 3 + TSS region transcription start site region 9607
1600012P17Rik 1 158967701 to 158980463 12762 - lincRNA gene RIKEN cDNA 1600012P17 gene
Tssr14503 1 158968478 to 158968482 4 - TSS region transcription start site region 14503
Tssr14504 1 158968826 to 158968832 6 - TSS region transcription start site region 14504
Tssr14505 1 158969507 to 158969517 10 - TSS region transcription start site region 14505
Tssr14506 1 158969688 to 158969696 8 - TSS region transcription start site region 14506
Tssr14507 1 158969700 to 158969707 7 - TSS region transcription start site region 14507
Tssr14508 1 158969743 to 158969749 6 - TSS region transcription start site region 14508
Tssr9608 1 158969810 to 158969835 25 + TSS region transcription start site region 9608
Tssr14509 1 158980452 to 158980469 17 - TSS region transcription start site region 14509
Gm39687 1 158988188 to 159042278 54090 - lncRNA gene predicted gene, 39687
Tssr14510 1 159030959 to 159030969 10 - TSS region transcription start site region 14510
4930562F17Rik 1 159134272 to 159166387 32115 + lincRNA gene RIKEN cDNA 4930562F17 gene
Gm4953 1 159168160 to 159168642 482 - pseudogene predicted pseudogene 4953
Tssr14511 1 159168685 to 159168689 4 - TSS region transcription start site region 14511
Gm7430 1 159209095 to 159211020 1925 - pseudogene predicted gene 7430
Cpgi912 1 159231742 to 159233050 1308 CpG island CpG island 912
Tssr9609 1 159232159 to 159232232 73 + TSS region transcription start site region 9609
Tssr9610 1 159232241 to 159232252 11 + TSS region transcription start site region 9610
Tssr9611 1 159232262 to 159232281 19 + TSS region transcription start site region 9611
Tssr9612 1 159232299 to 159232320 21 + TSS region transcription start site region 9612
Cop1 1 159232320 to 159347640 115320 + protein coding gene COP1, E3 ubiquitin ligase
D1Ertd475e 1 159234406 to 159234631 225 DNA segment DNA segment, Chr 1, ERATO Doi 475, expressed
Gm37115 1 159235710 to 159238558 2848 + unclassified gene predicted gene, 37115
Tssr9613 1 159241304 to 159241319 15 + TSS region transcription start site region 9613
Tssr9614 1 159256748 to 159256761 13 + TSS region transcription start site region 9614
Tssr9615 1 159268517 to 159268521 4 + TSS region transcription start site region 9615
Tssr9616 1 159275999 to 159276008 9 + TSS region transcription start site region 9616
Tssr9617 1 159276202 to 159276220 18 + TSS region transcription start site region 9617
9130025I19Rik 1 159289058 to 159289806 748 unclassified gene RIKEN cDNA 9130025I19 gene
Gm21053 1 159293805 to 159294189 384 + pseudogene predicted gene, 21053
Tssr9618 1 159310108 to 159310125 17 + TSS region transcription start site region 9618
Tssr9619 1 159310329 to 159310340 11 + TSS region transcription start site region 9619
Tssr9620 1 159313785 to 159313786 1 + TSS region transcription start site region 9620
Gm37088 1 159337414 to 159337819 405 - unclassified gene predicted gene, 37088
Scarna3a 1 159340307 to 159340424 117 + snoRNA gene small Cajal body-specific RNA 3A
Mir1843b 1 159340358 to 159340423 65 + miRNA gene microRNA 1843b
Tssr9621 1 159341986 to 159341989 3 + TSS region transcription start site region 9621
Gm31256 1 159378404 to 159378909 505 + pseudogene predicted gene, 31256
Gm37757 1 159428960 to 159429169 209 + pseudogene predicted gene, 37757
Tssr9622 1 159523768 to 159523873 105 + TSS region transcription start site region 9622
Tnr 1 159523769 to 159931729 407960 + protein coding gene tenascin R
Tssr9623 1 159523876 to 159523895 19 + TSS region transcription start site region 9623
D1Mit219 1 159562662 to 159562802 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 219
Gm37731 1 159595148 to 159597384 2236 + unclassified gene predicted gene, 37731
Tssr9624 1 159608763 to 159608766 3 + TSS region transcription start site region 9624
Gm10530 1 159614749 to 159684876 70127 + unclassified non-coding RNA gene predicted gene 10530
D1Mit159.1 1 159661856 to 159661974 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159.1
Hdlq14 1 159661973 to 159662164 191 QTL HDL QTL 14
D1Mit159 1 159661973 to 159662164 191 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 159
Cpgi913 1 159670953 to 159671104 151 CpG island CpG island 913