Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:156885385-159196318

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pas8 1 147249520 to 158405702 11156182 QTL pulmonary adenoma susceptibility 8
Actre12 1 151007188 to 157361794 6354606 QTL activity response to ethanol 12
Ralgps2 1 156804166 to 156939626 135460 - protein coding gene Ral GEF with PH domain and SH3 binding motif 2
Tssr14474 1 156937836 to 156937842 6 - TSS region transcription start site region 14474
Cpgi904 1 156938710 to 156940229 1519 CpG island CpG island 904
Tssr14475 1 156938782 to 156938809 27 - TSS region transcription start site region 14475
Tssr14476 1 156938811 to 156938853 42 - TSS region transcription start site region 14476
Tssr14477 1 156939533 to 156939549 16 - TSS region transcription start site region 14477
Tssr14478 1 156939553 to 156939615 62 - TSS region transcription start site region 14478
Tssr14479 1 156939628 to 156939657 29 - TSS region transcription start site region 14479
Tssr9581 1 156939657 to 156939689 32 + TSS region transcription start site region 9581
4930439D14Rik 1 156939838 to 156940196 358 + antisense lncRNA gene RIKEN cDNA 4930439D14 gene
Tssr14480 1 156940026 to 156940040 14 - TSS region transcription start site region 14480
Gm28694 1 156972760 to 157054034 81274 - lincRNA gene predicted gene 28694
Gm39685 1 156982775 to 156989859 7084 - lncRNA gene predicted gene, 39685
Tssr255 1 156997150 to 156997155 5 - TSS region transcription start site region 255
D1Mit202 1 157040949 to 157041091 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 202
Gm10531 1 157043547 to 157045849 2302 + unclassified gene predicted gene 10531
Gm30568 1 157059461 to 157081631 22170 - lncRNA gene predicted gene, 30568
Tssr256 1 157072025 to 157072028 3 + TSS region transcription start site region 256
Cpgi905 1 157076363 to 157076531 168 CpG island CpG island 905
Cpgi906 1 157077274 to 157077665 391 CpG island CpG island 906
Tex35 1 157099139 to 157108680 9541 - protein coding gene testis expressed 35
Tssr14481 1 157108632 to 157108664 32 - TSS region transcription start site region 14481
Gm30694 1 157121521 to 157128922 7401 + pseudogene predicted gene, 30694
Rasal2 1 157135183 to 157412595 277412 - protein coding gene RAS protein activator like 2
8030448I15Rik 1 157156099 to 157156668 569 unclassified gene RIKEN cDNA 8030448I15 gene
Tssr14482 1 157244470 to 157244505 35 - TSS region transcription start site region 14482
Tssr14483 1 157244506 to 157244557 51 - TSS region transcription start site region 14483
Tssr14484 1 157256627 to 157256650 23 - TSS region transcription start site region 14484
Tssr14485 1 157256691 to 157256701 10 - TSS region transcription start site region 14485
Tssr14486 1 157256703 to 157256725 22 - TSS region transcription start site region 14486
Tssr257 1 157256775 to 157256787 12 - TSS region transcription start site region 257
Tssr14487 1 157256819 to 157256841 22 - TSS region transcription start site region 14487
Gm18302 1 157317932 to 157318477 545 - pseudogene predicted gene, 18302
Tssr14488 1 157332395 to 157332400 5 - TSS region transcription start site region 14488
Gm37788 1 157347339 to 157350043 2704 - unclassified gene predicted gene, 37788
Gm37578 1 157354474 to 157355650 1176 - unclassified gene predicted gene, 37578
D1Mit268 1 157361663 to 157361794 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 268
Tssr258 1 157363099 to 157363101 2 + TSS region transcription start site region 258
Gm19048 1 157364663 to 157365277 614 + pseudogene predicted gene, 19048
Gm6058 1 157383931 to 157384329 398 - pseudogene predicted gene 6058
Tssr9582 1 157388888 to 157388890 2 + TSS region transcription start site region 9582
Tssr259 1 157398233 to 157398241 8 - TSS region transcription start site region 259
Gm37060 1 157404325 to 157406721 2396 - unclassified gene predicted gene, 37060
Cpgi907 1 157411648 to 157413001 1353 CpG island CpG island 907
Tssr9583 1 157412254 to 157412263 9 + TSS region transcription start site region 9583
Tssr14489 1 157412258 to 157412302 44 - TSS region transcription start site region 14489
2810025M15Rik 1 157412352 to 157420236 7884 + lncRNA gene RIKEN cDNA 2810025M15 gene
Tssr9584 1 157412371 to 157412390 19 + TSS region transcription start site region 9584
Tssr14490 1 157412527 to 157412565 38 - TSS region transcription start site region 14490
Tssr14491 1 157412576 to 157412621 45 - TSS region transcription start site region 14491
Tssr9585 1 157412649 to 157412664 15 + TSS region transcription start site region 9585
Tssr9586 1 157412667 to 157412677 10 + TSS region transcription start site region 9586
Tssr9587 1 157412681 to 157412683 2 + TSS region transcription start site region 9587
Tssr9588 1 157412685 to 157412697 12 + TSS region transcription start site region 9588
Tssr9589 1 157412701 to 157412774 73 + TSS region transcription start site region 9589
Tssr9590 1 157440620 to 157440656 36 + TSS region transcription start site region 9590
Cpgi908 1 157458439 to 157458628 189 CpG island CpG island 908
Tssr9591 1 157458554 to 157458597 43 + TSS region transcription start site region 9591
Cryzl2 1 157458577 to 157492638 34061 + protein coding gene crystallin zeta like 2
Gm15486 1 157497931 to 157511721 13790 - antisense lncRNA gene predicted gene 15486
Sec16b 1 157506733 to 157568425 61692 + protein coding gene SEC16 homolog B (S. cerevisiae)
Tssr9592 1 157506757 to 157506776 19 + TSS region transcription start site region 9592
Tssr9593 1 157506777 to 157506811 34 + TSS region transcription start site region 9593
Tssr260 1 157526065 to 157526076 11 + TSS region transcription start site region 260
Tssr9594 1 157526078 to 157526092 14 + TSS region transcription start site region 9594
Tssr9595 1 157526099 to 157526119 20 + TSS region transcription start site region 9595
Tssr9596 1 157526127 to 157526153 26 + TSS region transcription start site region 9596
Tssr9597 1 157526156 to 157526186 30 + TSS region transcription start site region 9597
Gm30903 1 157589795 to 157594707 4912 - lncRNA gene predicted gene, 30903
Gm37682 1 157596306 to 157596827 521 + pseudogene predicted gene, 37682
Gm7412 1 157600811 to 157601415 604 - pseudogene predicted gene 7412
Gm34423 1 157616871 to 157621472 4601 + pseudogene predicted gene, 34423
Gm37713 1 157621272 to 157621469 197 + pseudogene predicted gene, 37713
Gm38213 1 157621964 to 157622136 172 - pseudogene predicted gene, 38213
Gm38256 1 157940385 to 158141318 200933 + unclassified gene predicted gene, 38256
D1Mit290 1 157951697 to 157951805 108 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 290
Gm39686 1 158147695 to 158225278 77583 + lncRNA gene predicted gene, 39686
Brinp2 1 158245269 to 158356326 111057 - protein coding gene bone morphogenic protein/retinoic acid inducible neural-specific 2
Wbcq5 1 158267440 to 158267586 146 QTL white blood cell QTL 5
D1Mit227 1 158267440 to 158267586 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 227
D1Mit227.2 1 158267621 to 158267763 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 227.2
Tssr14492 1 158355240 to 158355243 3 - TSS region transcription start site region 14492
Cpgi909 1 158355706 to 158356574 868 CpG island CpG island 909
Tssr14493 1 158356258 to 158356313 55 - TSS region transcription start site region 14493
Tssr14494 1 158356324 to 158356344 20 - TSS region transcription start site region 14494
Tssr9598 1 158362089 to 158362102 13 + TSS region transcription start site region 9598
Tssr9599 1 158362180 to 158362192 12 + TSS region transcription start site region 9599
Tssr9600 1 158362261 to 158362296 35 + TSS region transcription start site region 9600
Astn1 1 158362273 to 158691781 329508 + protein coding gene astrotactin 1
Tssr9601 1 158362330 to 158362411 81 + TSS region transcription start site region 9601
Tssr9602 1 158362418 to 158362428 10 + TSS region transcription start site region 9602
Tssr9603 1 158362497 to 158362511 14 + TSS region transcription start site region 9603
Cpgi910 1 158362518 to 158363020 502 CpG island CpG island 910
Tssr9604 1 158362521 to 158362585 64 + TSS region transcription start site region 9604
Gm37861 1 158375936 to 158378804 2868 + unclassified gene predicted gene, 37861
Rd6m1 1 158405603 to 158405702 99 QTL retinal degeneration 6 modifier 1
Pcir1 1 158405603 to 158405702 99 QTL periosteal circumference 1
Femwf12 1 158405603 to 158405702 99 QTL femur work to failure 12
Stia1 1 158405603 to 158405702 99 QTL serum transfer induced arthritis 1
D1Mit33 1 158405603 to 158405702 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 33
Gm37679 1 158485032 to 158554299 69267 - antisense lncRNA gene predicted gene, 37679
Mir488 1 158505625 to 158505733 108 + miRNA gene microRNA 488
D1Mit349 1 158526229 to 158526342 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 349
Gm37367 1 158534807 to 158537408 2601 + unclassified gene predicted gene, 37367
Gm37848 1 158548864 to 158551966 3102 - unclassified gene predicted gene, 37848
Tssr9605 1 158551586 to 158551589 3 + TSS region transcription start site region 9605
Tssr9606 1 158691304 to 158691315 11 + TSS region transcription start site region 9606
Pappa2 1 158711727 to 158980490 268763 - protein coding gene pappalysin 2
Tssr14495 1 158712863 to 158712871 8 - TSS region transcription start site region 14495
Tssr14496 1 158712890 to 158712895 5 - TSS region transcription start site region 14496
Tssr14497 1 158712930 to 158712941 11 - TSS region transcription start site region 14497
Tssr14498 1 158822816 to 158822820 4 - TSS region transcription start site region 14498
Tssr14499 1 158828931 to 158828937 6 - TSS region transcription start site region 14499
Tssr14500 1 158887782 to 158887784 2 - TSS region transcription start site region 14500
Cpgi911 1 158935971 to 158936279 308 CpG island CpG island 911
Tssr14501 1 158953490 to 158953493 3 - TSS region transcription start site region 14501
Tssr14502 1 158958169 to 158958180 11 - TSS region transcription start site region 14502
Tssr9607 1 158958332 to 158958335 3 + TSS region transcription start site region 9607
1600012P17Rik 1 158967701 to 158980463 12762 - lincRNA gene RIKEN cDNA 1600012P17 gene
Tssr14503 1 158968478 to 158968482 4 - TSS region transcription start site region 14503
Tssr14504 1 158968826 to 158968832 6 - TSS region transcription start site region 14504
Tssr14505 1 158969507 to 158969517 10 - TSS region transcription start site region 14505
Tssr14506 1 158969688 to 158969696 8 - TSS region transcription start site region 14506
Tssr14507 1 158969700 to 158969707 7 - TSS region transcription start site region 14507
Tssr14508 1 158969743 to 158969749 6 - TSS region transcription start site region 14508
Tssr9608 1 158969810 to 158969835 25 + TSS region transcription start site region 9608
Tssr14509 1 158980452 to 158980469 17 - TSS region transcription start site region 14509
Gm39687 1 158988188 to 159042278 54090 - lncRNA gene predicted gene, 39687
Tssr14510 1 159030959 to 159030969 10 - TSS region transcription start site region 14510
4930562F17Rik 1 159134272 to 159166387 32115 + lincRNA gene RIKEN cDNA 4930562F17 gene
Gm4953 1 159168160 to 159168642 482 - pseudogene predicted pseudogene 4953
Tssr14511 1 159168685 to 159168689 4 - TSS region transcription start site region 14511