Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:156066400-156816454

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tor1aip2 1 156035664 to 156068861 33197 + protein coding gene torsin A interacting protein 2
Tssr9556 1 156067468 to 156067473 5 + TSS region transcription start site region 9556
Tssr9557 1 156067831 to 156067834 3 + TSS region transcription start site region 9557
Fam163a 1 156075966 to 156205026 129060 - protein coding gene family with sequence similarity 163, member A
D1Mit267 1 156090917 to 156091033 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 267
Cpgi893 1 156204318 to 156205287 969 CpG island CpG island 893
Tssr14415 1 156204998 to 156205032 34 - TSS region transcription start site region 14415
Gm30472 1 156213111 to 156280187 67076 + lncRNA gene predicted gene, 30472
Tssr9558 1 156213134 to 156213164 30 + TSS region transcription start site region 9558
Gm38113 1 156227093 to 156227293 200 - pseudogene predicted gene, 38113
Tdrd5 1 156255296 to 156303664 48368 - protein coding gene tudor domain containing 5
Tssr14416 1 156270665 to 156270676 11 - TSS region transcription start site region 14416
Tssr14417 1 156270688 to 156270699 11 - TSS region transcription start site region 14417
Tssr14418 1 156270737 to 156270746 9 - TSS region transcription start site region 14418
Tssr14419 1 156270764 to 156270767 3 - TSS region transcription start site region 14419
Tssr14420 1 156270775 to 156270791 16 - TSS region transcription start site region 14420
Tssr14421 1 156270822 to 156270829 7 - TSS region transcription start site region 14421
Tssr14422 1 156280363 to 156280397 34 - TSS region transcription start site region 14422
A430050A11Rik 1 156290102 to 156290747 645 - unclassified gene RIKEN cDNA A430050A11 gene
Cpgi894 1 156302787 to 156303831 1044 CpG island CpG island 894
Tssr14423 1 156303362 to 156303388 26 - TSS region transcription start site region 14423
Tssr14424 1 156303390 to 156303438 48 - TSS region transcription start site region 14424
Tssr9559 1 156303465 to 156303470 5 + TSS region transcription start site region 9559
Tssr9560 1 156303473 to 156303501 28 + TSS region transcription start site region 9560
4930518J20Rik 1 156303489 to 156304966 1477 + antisense lncRNA gene RIKEN cDNA 4930518J20 gene
Tssr9561 1 156303503 to 156303510 7 + TSS region transcription start site region 9561
Tssr14425 1 156303572 to 156303577 5 - TSS region transcription start site region 14425
Tssr14426 1 156303585 to 156303616 31 - TSS region transcription start site region 14426
Tssr9562 1 156310716 to 156310734 18 + TSS region transcription start site region 9562
Cpgi895 1 156310717 to 156311227 510 CpG island CpG island 895
Nphs2 1 156310727 to 156328035 17308 + protein coding gene nephrosis 2, podocin
Axdnd1 1 156330415 to 156420915 90500 - protein coding gene axonemal dynein light chain domain containing 1
Tssr14427 1 156340951 to 156340961 10 - TSS region transcription start site region 14427
Tssr9563 1 156366037 to 156366044 7 + TSS region transcription start site region 9563
Gm2000 1 156366040 to 156366484 444 + protein coding gene predicted gene 2000
D1Mit313 1 156389619 to 156389752 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 313
Tssr9564 1 156406984 to 156406996 12 + TSS region transcription start site region 9564
Cpgi896 1 156420606 to 156421162 556 CpG island CpG island 896
Tssr14428 1 156420872 to 156420897 25 - TSS region transcription start site region 14428
Tssr14429 1 156420899 to 156420914 15 - TSS region transcription start site region 14429
Tssr14430 1 156421109 to 156421119 10 - TSS region transcription start site region 14430
Tssr14431 1 156421146 to 156421157 11 - TSS region transcription start site region 14431
Soat1 1 156428108 to 156474328 46220 - protein coding gene sterol O-acyltransferase 1
Tssr14432 1 156428529 to 156428532 3 - TSS region transcription start site region 14432
Tssr14433 1 156428848 to 156428859 11 - TSS region transcription start site region 14433
Tssr14434 1 156428965 to 156428986 21 - TSS region transcription start site region 14434
Tssr14435 1 156429467 to 156429488 21 - TSS region transcription start site region 14435
Tssr14436 1 156430032 to 156430036 4 - TSS region transcription start site region 14436
Tssr14437 1 156430312 to 156430324 12 - TSS region transcription start site region 14437
Tssr14438 1 156430450 to 156430498 48 - TSS region transcription start site region 14438
Tssr14439 1 156430795 to 156430820 25 - TSS region transcription start site region 14439
Tssr14440 1 156430848 to 156430859 11 - TSS region transcription start site region 14440
Tssr14441 1 156430903 to 156430928 25 - TSS region transcription start site region 14441
Tssr14442 1 156439309 to 156439319 10 - TSS region transcription start site region 14442
Tssr9565 1 156439695 to 156439714 19 + TSS region transcription start site region 9565
Tssr14443 1 156441382 to 156441393 11 - TSS region transcription start site region 14443
Tssr14444 1 156441400 to 156441454 54 - TSS region transcription start site region 14444
Tssr14445 1 156444582 to 156444619 37 - TSS region transcription start site region 14445
Tssr14446 1 156446581 to 156446607 26 - TSS region transcription start site region 14446
Tssr9566 1 156455283 to 156455295 12 + TSS region transcription start site region 9566
Gm37648 1 156455290 to 156457852 2562 + unclassified gene predicted gene, 37648
Tssr14447 1 156462223 to 156462247 24 - TSS region transcription start site region 14447
Tssr14448 1 156462318 to 156462326 8 - TSS region transcription start site region 14448
Tssr9567 1 156468883 to 156468932 49 + TSS region transcription start site region 9567
Tssr9568 1 156470766 to 156470774 8 + TSS region transcription start site region 9568
Tssr14449 1 156471507 to 156471528 21 - TSS region transcription start site region 14449
Tssr14450 1 156473161 to 156473172 11 - TSS region transcription start site region 14450
Cpgi897 1 156473849 to 156474551 702 CpG island CpG island 897
Tssr14451 1 156474231 to 156474248 17 - TSS region transcription start site region 14451
Tssr14452 1 156474249 to 156474281 32 - TSS region transcription start site region 14452
Tssr14453 1 156474467 to 156474520 53 - TSS region transcription start site region 14453
Tssr251 1 156476195 to 156476234 39 - TSS region transcription start site region 251
Gm39682 1 156476559 to 156500204 23645 + lncRNA gene predicted gene, 39682
Tssr252 1 156500399 to 156500411 12 + TSS region transcription start site region 252
Gm10031 1 156524012 to 156526664 2652 + protein coding gene predicted pseudogene 10031
Tssr9569 1 156524074 to 156524107 33 + TSS region transcription start site region 9569
Gm17975 1 156535104 to 156535635 531 + pseudogene predicted gene, 17975
Cpgi898 1 156558285 to 156559622 1337 CpG island CpG island 898
Tssr9570 1 156558759 to 156558806 47 + TSS region transcription start site region 9570
Abl2 1 156558786 to 156649568 90782 + protein coding gene v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
Tssr9571 1 156558844 to 156558869 25 + TSS region transcription start site region 9571
Tssr14454 1 156559347 to 156559357 10 - TSS region transcription start site region 14454
Gm38043 1 156583108 to 156588248 5140 + unclassified gene predicted gene, 38043
Tssr9572 1 156615818 to 156615862 44 + TSS region transcription start site region 9572
Tssr9573 1 156615877 to 156615886 9 + TSS region transcription start site region 9573
Tssr9574 1 156615903 to 156615933 30 + TSS region transcription start site region 9574
D1Mit425 1 156624618 to 156624738 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 425
Cq1 1 156624618 to 156624738 120 QTL cholesterol QTL 1
Tssr9575 1 156634035 to 156634039 4 + TSS region transcription start site region 9575
Tor3a 1 156653617 to 156674339 20722 - protein coding gene torsin family 3, member A
Tssr14455 1 156654237 to 156654272 35 - TSS region transcription start site region 14455
Tssr14456 1 156654350 to 156654377 27 - TSS region transcription start site region 14456
Tssr14457 1 156654498 to 156654509 11 - TSS region transcription start site region 14457
Tssr14458 1 156654516 to 156654535 19 - TSS region transcription start site region 14458
Tssr14459 1 156655727 to 156655765 38 - TSS region transcription start site region 14459
Tssr14460 1 156656507 to 156656533 26 - TSS region transcription start site region 14460
Tssr14461 1 156666818 to 156666830 12 - TSS region transcription start site region 14461
Cpgi899 1 156667239 to 156667501 262 CpG island CpG island 899
Tssr14462 1 156667477 to 156667490 13 - TSS region transcription start site region 14462
Tssr14463 1 156669612 to 156669637 25 - TSS region transcription start site region 14463
Tssr14464 1 156669675 to 156669685 10 - TSS region transcription start site region 14464
Tssr253 1 156671361 to 156671377 16 - TSS region transcription start site region 253
Tssr9576 1 156672876 to 156672894 18 + TSS region transcription start site region 9576
Cpgi900 1 156673500 to 156674732 1232 CpG island CpG island 900
Tssr14465 1 156674273 to 156674287 14 - TSS region transcription start site region 14465
Tssr14466 1 156674290 to 156674344 54 - TSS region transcription start site region 14466
Tssr14467 1 156674837 to 156674883 46 - TSS region transcription start site region 14467
Tssr9577 1 156674977 to 156675006 29 + TSS region transcription start site region 9577
Gm19918 1 156678545 to 156678944 399 + unclassified non-coding RNA gene predicted gene, 19918
Fam20b 1 156678545 to 156719027 40482 - protein coding gene family with sequence similarity 20, member B
Cpgi901 1 156718297 to 156719484 1187 CpG island CpG island 901
Tssr14468 1 156718894 to 156718935 41 - TSS region transcription start site region 14468
Tssr14469 1 156718946 to 156718973 27 - TSS region transcription start site region 14469
Tssr14470 1 156718989 to 156719021 32 - TSS region transcription start site region 14470
Tssr14471 1 156719058 to 156719076 18 - TSS region transcription start site region 14471
Tssr254 1 156723477 to 156723482 5 + TSS region transcription start site region 254
Tssr9578 1 156735727 to 156735736 9 + TSS region transcription start site region 9578
Gm39683 1 156744404 to 156753261 8857 + lncRNA gene predicted gene, 39683
Cpgi902 1 156748492 to 156748682 190 CpG island CpG island 902
Cpgi903 1 156752334 to 156752572 238 CpG island CpG island 903
Bmd1 1 156774467 to 189571420 32796953 QTL bone mineral density 1
Bpq2 1 156774467 to 156774646 179 QTL blood pressure QTL 2
Lmr8a 1 156774467 to 156774646 179 QTL leishmaniasis resistance 8a
Vtbt2 1 156774467 to 156774646 179 QTL vertebral trabecular bone trait 2
Lmr8 1 156774467 to 189571420 32796953 QTL leishmaniasis resistance 8
Leusq4 1 156774467 to 170976071 14201604 QTL leucocytosis susceptibility QTL 4
Leusq1 1 156774467 to 168358833 11584366 QTL leucocytosis susceptibility QTL 1
Hcs7 1 156774467 to 168358833 11584366 QTL hepatocarcinogenesis susceptibility 7
D1Mit14 1 156774467 to 156774646 179 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 14
Cpfd1 1 156774467 to 156774646 179 QTL cerebellum pattern fissures, declival 1
Ccrs1 1 156774467 to 156774646 179 QTL corpus callosum hemisphere surface size 1
Bmd5 1 156774467 to 156774646 179 QTL bone mineral density 5
Skull2 1 156774467 to 156774646 179 QTL skull morphology 2
Tne1 1 156774467 to 156774646 179 QTL total number errors, hindlimb coordination test 1
Scgq1 1 156774467 to 176435127 19660660 QTL spontaneous crescentic glomerulonephritis QTL 1
Gm15428 1 156793512 to 156793844 332 + pseudogene predicted pseudogene 15428
Ralgps2 1 156804166 to 156939626 135460 - protein coding gene Ral GEF with PH domain and SH3 binding motif 2
Tssr14472 1 156807421 to 156807425 4 - TSS region transcription start site region 14472
Tssr14473 1 156814810 to 156814815 5 - TSS region transcription start site region 14473