Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:154356718-155096741

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna1e 1 154390731 to 154884501 493770 - protein coding gene calcium channel, voltage-dependent, R type, alpha 1E subunit
Tssr14301 1 154394585 to 154394590 5 - TSS region transcription start site region 14301
Tssr14302 1 154395152 to 154395158 6 - TSS region transcription start site region 14302
Cpgi874 1 154398381 to 154398877 496 CpG island CpG island 874
D1Mit142 1 154524058 to 154524178 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 142
Tssr14303 1 154542381 to 154542414 33 - TSS region transcription start site region 14303
Cpgi875 1 154725658 to 154725971 313 CpG island CpG island 875
Tssr14304 1 154726376 to 154726387 11 - TSS region transcription start site region 14304
Cpgi876 1 154726434 to 154727298 864 CpG island CpG island 876
Tssr14305 1 154726456 to 154726461 5 - TSS region transcription start site region 14305
Tssr14306 1 154726660 to 154726668 8 - TSS region transcription start site region 14306
Tssr14307 1 154726688 to 154726700 12 - TSS region transcription start site region 14307
Tssr14308 1 154726704 to 154726714 10 - TSS region transcription start site region 14308
Tssr14309 1 154726718 to 154726741 23 - TSS region transcription start site region 14309
Tssr14310 1 154726746 to 154726772 26 - TSS region transcription start site region 14310
Cpgi877 1 154799193 to 154799692 499 CpG island CpG island 877
Tssr14311 1 154816906 to 154816926 20 - TSS region transcription start site region 14311
Tssr14312 1 154816931 to 154816955 24 - TSS region transcription start site region 14312
Tssr14313 1 154816956 to 154816973 17 - TSS region transcription start site region 14313
Tssr14314 1 154883983 to 154884000 17 - TSS region transcription start site region 14314
Tssr14315 1 154884006 to 154884019 13 - TSS region transcription start site region 14315
Tssr14316 1 154884170 to 154884179 9 - TSS region transcription start site region 14316
Tssr14317 1 154884185 to 154884197 12 - TSS region transcription start site region 14317
Cpgi878 1 154884322 to 154884741 419 CpG island CpG island 878
Tssr14318 1 154884346 to 154884357 11 - TSS region transcription start site region 14318
Tssr14319 1 154884375 to 154884390 15 - TSS region transcription start site region 14319
Tssr14320 1 154884393 to 154884417 24 - TSS region transcription start site region 14320
Tssr14321 1 154884477 to 154884485 8 - TSS region transcription start site region 14321
Tssr14322 1 154884500 to 154884513 13 - TSS region transcription start site region 14322
Tssr14323 1 154884520 to 154884530 10 - TSS region transcription start site region 14323
Gm30521 1 154905780 to 154929198 23418 - lncRNA gene predicted gene, 30521
D1Mit397 1 154908169 to 154908279 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 397
Gm41976 1 154911843 to 154914496 2653 + lncRNA gene predicted gene, 41976
Tssr14324 1 154929184 to 154929195 11 - TSS region transcription start site region 14324
Gm30602 1 154968466 to 154974985 6519 - lncRNA gene predicted gene, 30602
Gm41977 1 155008692 to 155021148 12456 - lncRNA gene predicted gene, 41977
Gm29282 1 155011332 to 155057179 45847 - lincRNA gene predicted gene 29282
Gm41980 1 155021248 to 155061614 40366 - lncRNA gene predicted gene, 41980
Cpgi879 1 155029154 to 155029423 269 CpG island CpG island 879
Gm29441 1 155031739 to 155031949 210 + pseudogene predicted gene 29441
Gm41979 1 155040351 to 155048694 8343 - lncRNA gene predicted gene, 41979
Tssr14325 1 155050280 to 155050286 6 - TSS region transcription start site region 14325
Tssr14326 1 155051299 to 155051306 7 - TSS region transcription start site region 14326
Tssr14327 1 155054750 to 155054761 11 - TSS region transcription start site region 14327
Tssr247 1 155054769 to 155054780 11 - TSS region transcription start site region 247
Tssr14328 1 155054802 to 155054811 9 - TSS region transcription start site region 14328
Tssr14329 1 155054857 to 155054864 7 - TSS region transcription start site region 14329
Tssr9520 1 155054972 to 155055015 43 + TSS region transcription start site region 9520
Tssr14330 1 155055179 to 155055185 6 - TSS region transcription start site region 14330
Tssr248 1 155059523 to 155059530 7 - TSS region transcription start site region 248
Tssr14331 1 155059534 to 155059545 11 - TSS region transcription start site region 14331
Tssr14332 1 155059548 to 155059557 9 - TSS region transcription start site region 14332
Tssr14333 1 155059558 to 155059575 17 - TSS region transcription start site region 14333
Cpgi880 1 155059662 to 155059887 225 CpG island CpG island 880
Tssr9521 1 155059686 to 155059710 24 + TSS region transcription start site region 9521
Tssr9522 1 155059944 to 155059946 2 + TSS region transcription start site region 9522
Tssr9523 1 155062301 to 155062319 18 + TSS region transcription start site region 9523
Gm9530 1 155063447 to 155083266 19819 - lincRNA gene predicted gene 9530
Cpgi881 1 155082947 to 155084061 1114 CpG island CpG island 881
Tssr9524 1 155083707 to 155083733 26 + TSS region transcription start site region 9524
Tssr14334 1 155084152 to 155084161 9 - TSS region transcription start site region 14334
Ier5 1 155096367 to 155099636 3269 - protein coding gene immediate early response 5
Tssr249 1 155096727 to 155096748 21 - TSS region transcription start site region 249