Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:153990689-154535416

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30327 1 153991063 to 154024648 33585 + lncRNA gene predicted gene, 30327
Gm29291 1 154003396 to 154006221 2825 - lincRNA gene predicted gene 29291
Tssr9511 1 154010032 to 154010063 31 + TSS region transcription start site region 9511
Gm28286 1 154027363 to 154034301 6938 - lincRNA gene predicted gene 28286
Cpgi872 1 154034105 to 154034257 152 CpG island CpG island 872
A830008E24Rik 1 154037597 to 154117951 80354 - lincRNA gene RIKEN cDNA A830008E24 gene
Gm46165 1 154063544 to 154112909 49365 + lncRNA gene predicted gene, 46165
Tssr9512 1 154078024 to 154078025 1 + TSS region transcription start site region 9512
Tssr9513 1 154078232 to 154078242 10 + TSS region transcription start site region 9513
Gm25336 1 154080095 to 154080199 104 - snoRNA gene predicted gene, 25336
Tssr14296 1 154080709 to 154080752 43 - TSS region transcription start site region 14296
Tssr14297 1 154116144 to 154116171 27 - TSS region transcription start site region 14297
Tssr14298 1 154116176 to 154116187 11 - TSS region transcription start site region 14298
Tssr14299 1 154117630 to 154117642 12 - TSS region transcription start site region 14299
Tssr14300 1 154117847 to 154117856 9 - TSS region transcription start site region 14300
Gm30388 1 154196312 to 154204040 7728 - lncRNA gene predicted gene, 30388
Zfp648 1 154201187 to 154205689 4502 + protein coding gene zinc finger protein 648
Tssr9514 1 154201552 to 154201560 8 + TSS region transcription start site region 9514
Tssr9515 1 154201565 to 154201577 12 + TSS region transcription start site region 9515
Cpgi873 1 154204663 to 154205654 991 CpG island CpG island 873
Tssr9516 1 154204879 to 154204890 11 + TSS region transcription start site region 9516
Tssr9517 1 154204906 to 154204919 13 + TSS region transcription start site region 9517
Tssr9518 1 154205147 to 154205149 2 + TSS region transcription start site region 9518
D1Mit42 1 154215380 to 154215632 252 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 42
4930452N14Rik 1 154241521 to 154256906 15385 - lincRNA gene RIKEN cDNA 4930452N14 gene
4930532M18Rik 1 154255689 to 154270416 14727 + lincRNA gene RIKEN cDNA 4930532M18 gene
Tssr9519 1 154256982 to 154256984 2 + TSS region transcription start site region 9519
Gm30465 1 154261674 to 154264071 2397 - lncRNA gene predicted gene, 30465
D1Mit450 1 154287720 to 154287837 117 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 450
D1Mit523 1 154304366 to 154304485 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-523
n-R5s220 1 154311408 to 154311527 119 - rRNA gene nuclear encoded rRNA 5S 220
Gm18727 1 154323056 to 154323608 552 - pseudogene predicted gene, 18727
D1Mit201 1 154345076 to 154345195 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 201
Cacna1e 1 154390731 to 154884501 493770 - protein coding gene calcium channel, voltage-dependent, R type, alpha 1E subunit
Tssr14301 1 154394585 to 154394590 5 - TSS region transcription start site region 14301
Tssr14302 1 154395152 to 154395158 6 - TSS region transcription start site region 14302
Cpgi874 1 154398381 to 154398877 496 CpG island CpG island 874
D1Mit142 1 154524058 to 154524178 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 142