Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:153884375-155884390

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216 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38352 1 153889741 to 153892297 2556 - unclassified gene predicted gene, 38352
Tssr9498 1 153891732 to 153891740 8 + TSS region transcription start site region 9498
Teddm1a 1 153891742 to 153893058 1316 + protein coding gene transmembrane epididymal protein 1A
Tssr9499 1 153891837 to 153891844 7 + TSS region transcription start site region 9499
Gm38440 1 153893724 to 153899870 6146 - lncRNA gene predicted gene, 38440
Cpgi871 1 153899663 to 153901007 1344 CpG island CpG island 871
Tssr14293 1 153899727 to 153899742 15 - TSS region transcription start site region 14293
Mir8114 1 153899926 to 153900036 110 + miRNA gene microRNA 8114
Tssr9500 1 153899937 to 153899953 16 + TSS region transcription start site region 9500
Glul 1 153899944 to 153909723 9779 + protein coding gene glutamate-ammonia ligase (glutamine synthetase)
Tssr14294 1 153900198 to 153900210 12 - TSS region transcription start site region 14294
Tssr14295 1 153900464 to 153900492 28 - TSS region transcription start site region 14295
Tssr9501 1 153900559 to 153900568 9 + TSS region transcription start site region 9501
Tssr9502 1 153900572 to 153900601 29 + TSS region transcription start site region 9502
Tssr9503 1 153904616 to 153904629 13 + TSS region transcription start site region 9503
Tssr9504 1 153907930 to 153907944 14 + TSS region transcription start site region 9504
Tssr9505 1 153908393 to 153908412 19 + TSS region transcription start site region 9505
Tssr9506 1 153908499 to 153908503 4 + TSS region transcription start site region 9506
Tssr9507 1 153909176 to 153909189 13 + TSS region transcription start site region 9507
Tssr9508 1 153909199 to 153909210 11 + TSS region transcription start site region 9508
Tssr9509 1 153909229 to 153909241 12 + TSS region transcription start site region 9509
Tssr9510 1 153909457 to 153909471 14 + TSS region transcription start site region 9510
Gm29290 1 153939226 to 153941290 2064 + lincRNA gene predicted gene 29290
Gm30327 1 153991063 to 154024648 33585 + lncRNA gene predicted gene, 30327
Gm29291 1 154003396 to 154006221 2825 - lincRNA gene predicted gene 29291
Tssr9511 1 154010032 to 154010063 31 + TSS region transcription start site region 9511
Gm28286 1 154027363 to 154034301 6938 - lincRNA gene predicted gene 28286
Cpgi872 1 154034105 to 154034257 152 CpG island CpG island 872
A830008E24Rik 1 154037597 to 154117951 80354 - lincRNA gene RIKEN cDNA A830008E24 gene
Gm46165 1 154063544 to 154112909 49365 + lncRNA gene predicted gene, 46165
Tssr9512 1 154078024 to 154078025 1 + TSS region transcription start site region 9512
Tssr9513 1 154078232 to 154078242 10 + TSS region transcription start site region 9513
Gm25336 1 154080095 to 154080199 104 - snoRNA gene predicted gene, 25336
Tssr14296 1 154080709 to 154080752 43 - TSS region transcription start site region 14296
Tssr14297 1 154116144 to 154116171 27 - TSS region transcription start site region 14297
Tssr14298 1 154116176 to 154116187 11 - TSS region transcription start site region 14298
Tssr14299 1 154117630 to 154117642 12 - TSS region transcription start site region 14299
Tssr14300 1 154117847 to 154117856 9 - TSS region transcription start site region 14300
Gm30388 1 154196312 to 154204040 7728 - lncRNA gene predicted gene, 30388
Zfp648 1 154201187 to 154205689 4502 + protein coding gene zinc finger protein 648
Tssr9514 1 154201552 to 154201560 8 + TSS region transcription start site region 9514
Tssr9515 1 154201565 to 154201577 12 + TSS region transcription start site region 9515
Cpgi873 1 154204663 to 154205654 991 CpG island CpG island 873
Tssr9516 1 154204879 to 154204890 11 + TSS region transcription start site region 9516
Tssr9517 1 154204906 to 154204919 13 + TSS region transcription start site region 9517
Tssr9518 1 154205147 to 154205149 2 + TSS region transcription start site region 9518
D1Mit42 1 154215380 to 154215632 252 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 42
4930452N14Rik 1 154241521 to 154256906 15385 - lincRNA gene RIKEN cDNA 4930452N14 gene
4930532M18Rik 1 154255689 to 154270416 14727 + lincRNA gene RIKEN cDNA 4930532M18 gene
Tssr9519 1 154256982 to 154256984 2 + TSS region transcription start site region 9519
Gm30465 1 154261674 to 154264071 2397 - lncRNA gene predicted gene, 30465
D1Mit450 1 154287720 to 154287837 117 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 450
D1Mit523 1 154304366 to 154304485 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-523
n-R5s220 1 154311408 to 154311527 119 - rRNA gene nuclear encoded rRNA 5S 220
Gm18727 1 154323056 to 154323608 552 - pseudogene predicted gene, 18727
D1Mit201 1 154345076 to 154345195 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 201
Cacna1e 1 154390731 to 154884501 493770 - protein coding gene calcium channel, voltage-dependent, R type, alpha 1E subunit
Tssr14301 1 154394585 to 154394590 5 - TSS region transcription start site region 14301
Tssr14302 1 154395152 to 154395158 6 - TSS region transcription start site region 14302
Cpgi874 1 154398381 to 154398877 496 CpG island CpG island 874
D1Mit142 1 154524058 to 154524178 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 142
Tssr14303 1 154542381 to 154542414 33 - TSS region transcription start site region 14303
Cpgi875 1 154725658 to 154725971 313 CpG island CpG island 875
Tssr14304 1 154726376 to 154726387 11 - TSS region transcription start site region 14304
Cpgi876 1 154726434 to 154727298 864 CpG island CpG island 876
Tssr14305 1 154726456 to 154726461 5 - TSS region transcription start site region 14305
Tssr14306 1 154726660 to 154726668 8 - TSS region transcription start site region 14306
Tssr14307 1 154726688 to 154726700 12 - TSS region transcription start site region 14307
Tssr14308 1 154726704 to 154726714 10 - TSS region transcription start site region 14308
Tssr14309 1 154726718 to 154726741 23 - TSS region transcription start site region 14309
Tssr14310 1 154726746 to 154726772 26 - TSS region transcription start site region 14310
Cpgi877 1 154799193 to 154799692 499 CpG island CpG island 877
Tssr14311 1 154816906 to 154816926 20 - TSS region transcription start site region 14311
Tssr14312 1 154816931 to 154816955 24 - TSS region transcription start site region 14312
Tssr14313 1 154816956 to 154816973 17 - TSS region transcription start site region 14313
Tssr14314 1 154883983 to 154884000 17 - TSS region transcription start site region 14314
Tssr14315 1 154884006 to 154884019 13 - TSS region transcription start site region 14315
Tssr14316 1 154884170 to 154884179 9 - TSS region transcription start site region 14316
Tssr14317 1 154884185 to 154884197 12 - TSS region transcription start site region 14317
Cpgi878 1 154884322 to 154884741 419 CpG island CpG island 878
Tssr14318 1 154884346 to 154884357 11 - TSS region transcription start site region 14318
Tssr14319 1 154884375 to 154884390 15 - TSS region transcription start site region 14319
Tssr14320 1 154884393 to 154884417 24 - TSS region transcription start site region 14320
Tssr14321 1 154884477 to 154884485 8 - TSS region transcription start site region 14321
Tssr14322 1 154884500 to 154884513 13 - TSS region transcription start site region 14322
Tssr14323 1 154884520 to 154884530 10 - TSS region transcription start site region 14323
Gm30521 1 154905780 to 154929198 23418 - lncRNA gene predicted gene, 30521
D1Mit397 1 154908169 to 154908279 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 397
Gm41976 1 154911843 to 154914496 2653 + lncRNA gene predicted gene, 41976
Tssr14324 1 154929184 to 154929195 11 - TSS region transcription start site region 14324
Gm30602 1 154968466 to 154974985 6519 - lncRNA gene predicted gene, 30602
Gm41977 1 155008692 to 155021148 12456 - lncRNA gene predicted gene, 41977
Gm29282 1 155011332 to 155057179 45847 - lincRNA gene predicted gene 29282
Gm41980 1 155021248 to 155061614 40366 - lncRNA gene predicted gene, 41980
Cpgi879 1 155029154 to 155029423 269 CpG island CpG island 879
Gm29441 1 155031739 to 155031949 210 + pseudogene predicted gene 29441
Gm41979 1 155040351 to 155048694 8343 - lncRNA gene predicted gene, 41979
Tssr14325 1 155050280 to 155050286 6 - TSS region transcription start site region 14325
Tssr14326 1 155051299 to 155051306 7 - TSS region transcription start site region 14326
Tssr14327 1 155054750 to 155054761 11 - TSS region transcription start site region 14327
Tssr247 1 155054769 to 155054780 11 - TSS region transcription start site region 247
Tssr14328 1 155054802 to 155054811 9 - TSS region transcription start site region 14328
Tssr14329 1 155054857 to 155054864 7 - TSS region transcription start site region 14329
Tssr9520 1 155054972 to 155055015 43 + TSS region transcription start site region 9520
Tssr14330 1 155055179 to 155055185 6 - TSS region transcription start site region 14330
Tssr248 1 155059523 to 155059530 7 - TSS region transcription start site region 248
Tssr14331 1 155059534 to 155059545 11 - TSS region transcription start site region 14331
Tssr14332 1 155059548 to 155059557 9 - TSS region transcription start site region 14332
Tssr14333 1 155059558 to 155059575 17 - TSS region transcription start site region 14333
Cpgi880 1 155059662 to 155059887 225 CpG island CpG island 880
Tssr9521 1 155059686 to 155059710 24 + TSS region transcription start site region 9521
Tssr9522 1 155059944 to 155059946 2 + TSS region transcription start site region 9522
Tssr9523 1 155062301 to 155062319 18 + TSS region transcription start site region 9523
Gm9530 1 155063447 to 155083266 19819 - lincRNA gene predicted gene 9530
Cpgi881 1 155082947 to 155084061 1114 CpG island CpG island 881
Tssr9524 1 155083707 to 155083733 26 + TSS region transcription start site region 9524
Tssr14334 1 155084152 to 155084161 9 - TSS region transcription start site region 14334
Ier5 1 155096367 to 155099636 3269 - protein coding gene immediate early response 5
Tssr249 1 155096727 to 155096748 21 - TSS region transcription start site region 249
Cpgi882 1 155097984 to 155099856 1872 CpG island CpG island 882
Tssr14335 1 155097986 to 155098002 16 - TSS region transcription start site region 14335
Tssr9525 1 155098193 to 155098231 38 + TSS region transcription start site region 9525
Tssr9526 1 155098233 to 155098259 26 + TSS region transcription start site region 9526
Tssr9527 1 155098284 to 155098296 12 + TSS region transcription start site region 9527
Tssr14336 1 155098732 to 155098746 14 - TSS region transcription start site region 14336
Tssr14337 1 155099470 to 155099481 11 - TSS region transcription start site region 14337
Tssr14338 1 155099533 to 155099544 11 - TSS region transcription start site region 14338
Tssr14339 1 155099630 to 155099633 3 - TSS region transcription start site region 14339
Tssr9528 1 155104966 to 155104968 2 + TSS region transcription start site region 9528
Gm41981 1 155112307 to 155119199 6892 - lncRNA gene predicted gene, 41981
Tssr9529 1 155117068 to 155117071 3 + TSS region transcription start site region 9529
Gm30922 1 155122382 to 155130614 8232 + lncRNA gene predicted gene, 30922
Tssr9530 1 155122418 to 155122425 7 + TSS region transcription start site region 9530
Mr1 1 155127872 to 155146813 18941 - protein coding gene major histocompatibility complex, class I-related
Tssr14340 1 155128502 to 155128533 31 - TSS region transcription start site region 14340
Tssr9531 1 155145850 to 155145855 5 + TSS region transcription start site region 9531
Tssr14341 1 155146755 to 155146789 34 - TSS region transcription start site region 14341
Tssr14342 1 155146791 to 155146820 29 - TSS region transcription start site region 14342
Cpgi883 1 155158473 to 155159419 946 CpG island CpG island 883
Stx6 1 155158677 to 155207567 48890 + protein coding gene syntaxin 6
Tssr9532 1 155158684 to 155158701 17 + TSS region transcription start site region 9532
Tssr9533 1 155158704 to 155158776 72 + TSS region transcription start site region 9533
Tssr14343 1 155159293 to 155159339 46 - TSS region transcription start site region 14343
Tssr9534 1 155161538 to 155161544 6 + TSS region transcription start site region 9534
D1Mit55 1 155166854 to 155167004 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 55
Gm8850 1 155179801 to 155180388 587 + pseudogene predicted gene 8850
Gm46166 1 155206993 to 155212060 5067 - lncRNA gene predicted gene, 46166
BC034090 1 155212471 to 155244444 31973 - protein coding gene cDNA sequence BC034090
Tssr14344 1 155230129 to 155230143 14 - TSS region transcription start site region 14344
Tssr14345 1 155230191 to 155230200 9 - TSS region transcription start site region 14345
Gm37622 1 155231304 to 155233159 1855 + antisense lncRNA gene predicted gene, 37622
Tssr14346 1 155232576 to 155232589 13 - TSS region transcription start site region 14346
Tssr14347 1 155232590 to 155232595 5 - TSS region transcription start site region 14347
Tssr14348 1 155232597 to 155232606 9 - TSS region transcription start site region 14348
Tssr14349 1 155232609 to 155232637 28 - TSS region transcription start site region 14349
Tssr14350 1 155232676 to 155232704 28 - TSS region transcription start site region 14350
Tssr14351 1 155232710 to 155232729 19 - TSS region transcription start site region 14351
Gm31102 1 155243076 to 155256851 13775 + lncRNA gene predicted gene, 31102
Cpgi884 1 155243981 to 155245144 1163 CpG island CpG island 884
Tssr14352 1 155244460 to 155244497 37 - TSS region transcription start site region 14352
Tssr14353 1 155244499 to 155244544 45 - TSS region transcription start site region 14353
Tssr9535 1 155244611 to 155244622 11 + TSS region transcription start site region 9535
Xpr1 1 155275701 to 155417415 141714 - protein coding gene xenotropic and polytropic retrovirus receptor 1
Tssr14354 1 155276376 to 155276381 5 - TSS region transcription start site region 14354
Tssr14355 1 155279356 to 155279370 14 - TSS region transcription start site region 14355
Tssr14356 1 155279407 to 155279424 17 - TSS region transcription start site region 14356
Tssr14357 1 155280434 to 155280438 4 - TSS region transcription start site region 14357
Gm22569 1 155315966 to 155316089 123 + miRNA gene predicted gene, 22569
D1Dcr13 1 155339386 to 155339486 100 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 13
Gm17974 1 155348551 to 155349053 502 + pseudogene predicted gene, 17974
Cpgi885 1 155416689 to 155417669 980 CpG island CpG island 885
Tssr14358 1 155417261 to 155417272 11 - TSS region transcription start site region 14358
Tssr14359 1 155417283 to 155417323 40 - TSS region transcription start site region 14359
Tssr14360 1 155417336 to 155417358 22 - TSS region transcription start site region 14360
Tssr14361 1 155417366 to 155417386 20 - TSS region transcription start site region 14361
Tssr14362 1 155417394 to 155417435 41 - TSS region transcription start site region 14362
D1Dcr14 1 155426075 to 155426170 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 14
Gm31713 1 155427015 to 155438508 11493 - lncRNA gene predicted gene, 31713
Tssr9536 1 155447467 to 155447483 16 + TSS region transcription start site region 9536
Gm31772 1 155449553 to 155459769 10216 + lncRNA gene predicted gene, 31772
Gm5532 1 155520173 to 155527111 6938 - lincRNA gene predicted gene 5532
Tssr14363 1 155527083 to 155527091 8 - TSS region transcription start site region 14363
Tssr14364 1 155527133 to 155527155 22 - TSS region transcription start site region 14364
Tssr14365 1 155527156 to 155527165 9 - TSS region transcription start site region 14365
Tssr14366 1 155527172 to 155527186 14 - TSS region transcription start site region 14366
Cpgi886 1 155557794 to 155558832 1038 CpG island CpG island 886
Acbd6 1 155558098 to 155687474 129376 + protein coding gene acyl-Coenzyme A binding domain containing 6
Tssr9537 1 155558112 to 155558232 120 + TSS region transcription start site region 9537
Tssr9538 1 155558319 to 155558402 83 + TSS region transcription start site region 9538
Tssr9539 1 155558411 to 155558421 10 + TSS region transcription start site region 9539
Tssr9540 1 155558497 to 155558552 55 + TSS region transcription start site region 9540
Lhx4 1 155698031 to 155751684 53653 - protein coding gene LIM homeobox protein 4
Shali5 1 155706491 to 186261999 30555508 QTL survival time to hyperoxic acute lung injury 5
D1Mit34 1 155706491 to 155706677 186 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 34
D1Dcr5 1 155713164 to 155713291 127 DNA segment DNA segment, Chr 1, Derry C. Roopenian 5
Cpgi887 1 155736290 to 155738274 1984 CpG island CpG island 887
Cpgi888 1 155740518 to 155743383 2865 CpG island CpG island 888
Tssr14367 1 155742001 to 155742046 45 - TSS region transcription start site region 14367
Tssr14368 1 155742125 to 155742136 11 - TSS region transcription start site region 14368
Tssr9541 1 155742509 to 155742515 6 + TSS region transcription start site region 9541