Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:153861408-154761527

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr9497 1 153874335 to 153874354 19 + TSS region transcription start site region 9497
Teddm1b 1 153874345 to 153876871 2526 + protein coding gene transmembrane epididymal protein 1B
Tssr14292 1 153875012 to 153875045 33 - TSS region transcription start site region 14292
Gm38352 1 153889741 to 153892297 2556 - unclassified gene predicted gene, 38352
Tssr9498 1 153891732 to 153891740 8 + TSS region transcription start site region 9498
Teddm1a 1 153891742 to 153893058 1316 + protein coding gene transmembrane epididymal protein 1A
Tssr9499 1 153891837 to 153891844 7 + TSS region transcription start site region 9499
Gm38440 1 153893724 to 153899870 6146 - lncRNA gene predicted gene, 38440
Cpgi871 1 153899663 to 153901007 1344 CpG island CpG island 871
Tssr14293 1 153899727 to 153899742 15 - TSS region transcription start site region 14293
Mir8114 1 153899926 to 153900036 110 + miRNA gene microRNA 8114
Tssr9500 1 153899937 to 153899953 16 + TSS region transcription start site region 9500
Glul 1 153899944 to 153909723 9779 + protein coding gene glutamate-ammonia ligase (glutamine synthetase)
Tssr14294 1 153900198 to 153900210 12 - TSS region transcription start site region 14294
Tssr14295 1 153900464 to 153900492 28 - TSS region transcription start site region 14295
Tssr9501 1 153900559 to 153900568 9 + TSS region transcription start site region 9501
Tssr9502 1 153900572 to 153900601 29 + TSS region transcription start site region 9502
Tssr9503 1 153904616 to 153904629 13 + TSS region transcription start site region 9503
Tssr9504 1 153907930 to 153907944 14 + TSS region transcription start site region 9504
Tssr9505 1 153908393 to 153908412 19 + TSS region transcription start site region 9505
Tssr9506 1 153908499 to 153908503 4 + TSS region transcription start site region 9506
Tssr9507 1 153909176 to 153909189 13 + TSS region transcription start site region 9507
Tssr9508 1 153909199 to 153909210 11 + TSS region transcription start site region 9508
Tssr9509 1 153909229 to 153909241 12 + TSS region transcription start site region 9509
Tssr9510 1 153909457 to 153909471 14 + TSS region transcription start site region 9510
Gm29290 1 153939226 to 153941290 2064 + lincRNA gene predicted gene 29290
Gm30327 1 153991063 to 154024648 33585 + lncRNA gene predicted gene, 30327
Gm29291 1 154003396 to 154006221 2825 - lincRNA gene predicted gene 29291
Tssr9511 1 154010032 to 154010063 31 + TSS region transcription start site region 9511
Gm28286 1 154027363 to 154034301 6938 - lincRNA gene predicted gene 28286
Cpgi872 1 154034105 to 154034257 152 CpG island CpG island 872
A830008E24Rik 1 154037597 to 154117951 80354 - lincRNA gene RIKEN cDNA A830008E24 gene
Gm46165 1 154063544 to 154112909 49365 + lncRNA gene predicted gene, 46165
Tssr9512 1 154078024 to 154078025 1 + TSS region transcription start site region 9512
Tssr9513 1 154078232 to 154078242 10 + TSS region transcription start site region 9513
Gm25336 1 154080095 to 154080199 104 - snoRNA gene predicted gene, 25336
Tssr14296 1 154080709 to 154080752 43 - TSS region transcription start site region 14296
Tssr14297 1 154116144 to 154116171 27 - TSS region transcription start site region 14297
Tssr14298 1 154116176 to 154116187 11 - TSS region transcription start site region 14298
Tssr14299 1 154117630 to 154117642 12 - TSS region transcription start site region 14299
Tssr14300 1 154117847 to 154117856 9 - TSS region transcription start site region 14300
Gm30388 1 154196312 to 154204040 7728 - lncRNA gene predicted gene, 30388
Zfp648 1 154201187 to 154205689 4502 + protein coding gene zinc finger protein 648
Tssr9514 1 154201552 to 154201560 8 + TSS region transcription start site region 9514
Tssr9515 1 154201565 to 154201577 12 + TSS region transcription start site region 9515
Cpgi873 1 154204663 to 154205654 991 CpG island CpG island 873
Tssr9516 1 154204879 to 154204890 11 + TSS region transcription start site region 9516
Tssr9517 1 154204906 to 154204919 13 + TSS region transcription start site region 9517
Tssr9518 1 154205147 to 154205149 2 + TSS region transcription start site region 9518
D1Mit42 1 154215380 to 154215632 252 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 42
4930452N14Rik 1 154241521 to 154256906 15385 - lincRNA gene RIKEN cDNA 4930452N14 gene
4930532M18Rik 1 154255689 to 154270416 14727 + lincRNA gene RIKEN cDNA 4930532M18 gene
Tssr9519 1 154256982 to 154256984 2 + TSS region transcription start site region 9519
Gm30465 1 154261674 to 154264071 2397 - lncRNA gene predicted gene, 30465
D1Mit450 1 154287720 to 154287837 117 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 450
D1Mit523 1 154304366 to 154304485 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-523
n-R5s220 1 154311408 to 154311527 119 - rRNA gene nuclear encoded rRNA 5S 220
Gm18727 1 154323056 to 154323608 552 - pseudogene predicted gene, 18727
D1Mit201 1 154345076 to 154345195 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 201
Cacna1e 1 154390731 to 154884501 493770 - protein coding gene calcium channel, voltage-dependent, R type, alpha 1E subunit
Tssr14301 1 154394585 to 154394590 5 - TSS region transcription start site region 14301
Tssr14302 1 154395152 to 154395158 6 - TSS region transcription start site region 14302
Cpgi874 1 154398381 to 154398877 496 CpG island CpG island 874
D1Mit142 1 154524058 to 154524178 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 142
Tssr14303 1 154542381 to 154542414 33 - TSS region transcription start site region 14303
Cpgi875 1 154725658 to 154725971 313 CpG island CpG island 875
Tssr14304 1 154726376 to 154726387 11 - TSS region transcription start site region 14304
Cpgi876 1 154726434 to 154727298 864 CpG island CpG island 876
Tssr14305 1 154726456 to 154726461 5 - TSS region transcription start site region 14305
Tssr14306 1 154726660 to 154726668 8 - TSS region transcription start site region 14306
Tssr14307 1 154726688 to 154726700 12 - TSS region transcription start site region 14307
Tssr14308 1 154726704 to 154726714 10 - TSS region transcription start site region 14308
Tssr14309 1 154726718 to 154726741 23 - TSS region transcription start site region 14309
Tssr14310 1 154726746 to 154726772 26 - TSS region transcription start site region 14310