Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:153444741-154337297

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shcbp1l 1 153425162 to 153452574 27412 + protein coding gene Shc SH2-domain binding protein 1-like
Dhx9 1 153455758 to 153487660 31902 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 9
n-TIaat13 1 153458664 to 153458736 72 + tRNA gene nuclear encoded tRNA isoleucine 13 (anticodon TAT)
Cpgi867 1 153486782 to 153487895 1113 CpG island CpG island 867
Tssr9459 1 153486896 to 153486921 25 + TSS region transcription start site region 9459
Tssr14270 1 153487639 to 153487662 23 - TSS region transcription start site region 14270
Tssr14271 1 153487671 to 153487681 10 - TSS region transcription start site region 14271
Tssr14272 1 153487684 to 153487690 6 - TSS region transcription start site region 14272
Tssr9460 1 153487776 to 153487823 47 + TSS region transcription start site region 9460
Npl 1 153503016 to 153549714 46698 - protein coding gene N-acetylneuraminate pyruvate lyase
Gm46164 1 153505837 to 153508069 2232 - protein coding gene predicted gene, 46164
Tssr14273 1 153518944 to 153518959 15 - TSS region transcription start site region 14273
Tssr14274 1 153545341 to 153545374 33 - TSS region transcription start site region 14274
Tssr14275 1 153545384 to 153545396 12 - TSS region transcription start site region 14275
Cpgi868 1 153549485 to 153549861 376 CpG island CpG island 868
Tssr14276 1 153549697 to 153549724 27 - TSS region transcription start site region 14276
Tssr14277 1 153549734 to 153549745 11 - TSS region transcription start site region 14277
Tssr14278 1 153549818 to 153549828 10 - TSS region transcription start site region 14278
Tssr14279 1 153549838 to 153549855 17 - TSS region transcription start site region 14279
Tssr14280 1 153550045 to 153550081 36 - TSS region transcription start site region 14280
Gm6652 1 153619604 to 153620673 1069 - pseudogene predicted gene 6652
Tssr14281 1 153620727 to 153620736 9 - TSS region transcription start site region 14281
Cpgi869 1 153652857 to 153653253 396 CpG island CpG island 869
Tssr9461 1 153652930 to 153652931 1 + TSS region transcription start site region 9461
Tssr9462 1 153652943 to 153652954 11 + TSS region transcription start site region 9462
Rgs8 1 153652953 to 153697669 44716 + protein coding gene regulator of G-protein signaling 8
Tssr9463 1 153653106 to 153653176 70 + TSS region transcription start site region 9463
Tssr9464 1 153665282 to 153665325 43 + TSS region transcription start site region 9464
Tssr9465 1 153665490 to 153665504 14 + TSS region transcription start site region 9465
Tssr9466 1 153665587 to 153665595 8 + TSS region transcription start site region 9466
Tssr9467 1 153665627 to 153665653 26 + TSS region transcription start site region 9467
Tssr9468 1 153665666 to 153665679 13 + TSS region transcription start site region 9468
Tssr9469 1 153667503 to 153667512 9 + TSS region transcription start site region 9469
Tssr9470 1 153667635 to 153667640 5 + TSS region transcription start site region 9470
Tssr9471 1 153667670 to 153667676 6 + TSS region transcription start site region 9471
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
D1Mit104 1 153681660 to 153681816 156 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 104
Ssial1 1 153681816 to 63880843 -89800973 QTL susceptibility to sialadenitis 1
Gm29529 1 153690391 to 153692656 2265 - antisense lncRNA gene predicted gene 29529
Tssr9472 1 153695333 to 153695339 6 + TSS region transcription start site region 9472
Tssr9473 1 153695366 to 153695374 8 + TSS region transcription start site region 9473
Tssr9474 1 153695495 to 153695523 28 + TSS region transcription start site region 9474
Tssr9475 1 153696483 to 153696502 19 + TSS region transcription start site region 9475
5530400K19Rik 1 153714654 to 153716569 1915 + unclassified gene RIKEN cDNA 5530400K19 gene
C230024C17Rik 1 153721240 to 153737829 16589 - lincRNA gene RIKEN cDNA C230024C17 gene
Tssr14282 1 153723421 to 153723428 7 - TSS region transcription start site region 14282
Tssr9476 1 153723844 to 153723874 30 + TSS region transcription start site region 9476
Cpgi870 1 153740163 to 153740604 441 CpG island CpG island 870
Tssr9477 1 153740344 to 153740360 16 + TSS region transcription start site region 9477
Rgs16 1 153740353 to 153745468 5115 + protein coding gene regulator of G-protein signaling 16
Tssr9478 1 153740535 to 153740540 5 + TSS region transcription start site region 9478
Gm28513 1 153743552 to 153749324 5772 - antisense lncRNA gene predicted gene 28513
Tssr9479 1 153749414 to 153749442 28 + TSS region transcription start site region 9479
Rnasel 1 153749426 to 153764221 14795 + protein coding gene ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
Tssr9480 1 153749449 to 153749491 42 + TSS region transcription start site region 9480
Tssr9481 1 153749496 to 153749523 27 + TSS region transcription start site region 9481
Tssr9482 1 153749706 to 153749746 40 + TSS region transcription start site region 9482
Gm28512 1 153750682 to 153751547 865 + sense intronic lncRNA gene predicted gene 28512
Tssr9483 1 153751866 to 153751876 10 + TSS region transcription start site region 9483
Tssr9484 1 153751881 to 153751907 26 + TSS region transcription start site region 9484
Tssr9485 1 153751946 to 153752000 54 + TSS region transcription start site region 9485
Tssr9486 1 153752002 to 153752034 32 + TSS region transcription start site region 9486
Tssr9487 1 153752783 to 153752802 19 + TSS region transcription start site region 9487
Tssr9488 1 153752810 to 153752831 21 + TSS region transcription start site region 9488
Tssr9489 1 153752852 to 153752868 16 + TSS region transcription start site region 9489
Tssr9490 1 153752988 to 153752991 3 + TSS region transcription start site region 9490
Tssr9491 1 153760909 to 153760914 5 + TSS region transcription start site region 9491
Tssr9492 1 153761223 to 153761256 33 + TSS region transcription start site region 9492
Tssr9493 1 153762547 to 153762574 27 + TSS region transcription start site region 9493
Tssr9494 1 153762581 to 153762614 33 + TSS region transcription start site region 9494
Tssr9495 1 153762622 to 153762638 16 + TSS region transcription start site region 9495
Tssr9496 1 153762979 to 153762985 6 + TSS region transcription start site region 9496
Rgsl1 1 153779381 to 153844142 64761 - protein coding gene regulator of G-protein signaling like 1
Gm41974 1 153785245 to 153831545 46300 + lncRNA gene predicted gene, 41974
Tssr14283 1 153790801 to 153790812 11 - TSS region transcription start site region 14283
Tssr14284 1 153808163 to 153808168 5 - TSS region transcription start site region 14284
Gm18184 1 153835238 to 153836760 1522 - pseudogene predicted gene, 18184
Tssr14285 1 153844130 to 153844158 28 - TSS region transcription start site region 14285
Teddm2 1 153849542 to 153851195 1653 - protein coding gene transmembrane epididymal family member 2
Tssr14286 1 153850744 to 153850755 11 - TSS region transcription start site region 14286
Tssr14287 1 153851036 to 153851044 8 - TSS region transcription start site region 14287
Tssr14288 1 153851048 to 153851061 13 - TSS region transcription start site region 14288
Tssr14289 1 153851083 to 153851089 6 - TSS region transcription start site region 14289
Tssr14290 1 153851167 to 153851174 7 - TSS region transcription start site region 14290
Tssr14291 1 153851189 to 153851198 9 - TSS region transcription start site region 14291
Tssr9497 1 153874335 to 153874354 19 + TSS region transcription start site region 9497
Teddm1b 1 153874345 to 153876871 2526 + protein coding gene transmembrane epididymal protein 1B
Tssr14292 1 153875012 to 153875045 33 - TSS region transcription start site region 14292
Gm38352 1 153889741 to 153892297 2556 - unclassified gene predicted gene, 38352
Tssr9498 1 153891732 to 153891740 8 + TSS region transcription start site region 9498
Teddm1a 1 153891742 to 153893058 1316 + protein coding gene transmembrane epididymal protein 1A
Tssr9499 1 153891837 to 153891844 7 + TSS region transcription start site region 9499
Gm38440 1 153893724 to 153899870 6146 - lncRNA gene predicted gene, 38440
Cpgi871 1 153899663 to 153901007 1344 CpG island CpG island 871
Tssr14293 1 153899727 to 153899742 15 - TSS region transcription start site region 14293
Mir8114 1 153899926 to 153900036 110 + miRNA gene microRNA 8114
Tssr9500 1 153899937 to 153899953 16 + TSS region transcription start site region 9500
Glul 1 153899944 to 153909723 9779 + protein coding gene glutamate-ammonia ligase (glutamine synthetase)
Tssr14294 1 153900198 to 153900210 12 - TSS region transcription start site region 14294
Tssr14295 1 153900464 to 153900492 28 - TSS region transcription start site region 14295
Tssr9501 1 153900559 to 153900568 9 + TSS region transcription start site region 9501
Tssr9502 1 153900572 to 153900601 29 + TSS region transcription start site region 9502
Tssr9503 1 153904616 to 153904629 13 + TSS region transcription start site region 9503
Tssr9504 1 153907930 to 153907944 14 + TSS region transcription start site region 9504
Tssr9505 1 153908393 to 153908412 19 + TSS region transcription start site region 9505
Tssr9506 1 153908499 to 153908503 4 + TSS region transcription start site region 9506
Tssr9507 1 153909176 to 153909189 13 + TSS region transcription start site region 9507
Tssr9508 1 153909199 to 153909210 11 + TSS region transcription start site region 9508
Tssr9509 1 153909229 to 153909241 12 + TSS region transcription start site region 9509
Tssr9510 1 153909457 to 153909471 14 + TSS region transcription start site region 9510
Gm29290 1 153939226 to 153941290 2064 + lincRNA gene predicted gene 29290
Gm30327 1 153991063 to 154024648 33585 + lncRNA gene predicted gene, 30327
Gm29291 1 154003396 to 154006221 2825 - lincRNA gene predicted gene 29291
Tssr9511 1 154010032 to 154010063 31 + TSS region transcription start site region 9511
Gm28286 1 154027363 to 154034301 6938 - lincRNA gene predicted gene 28286
Cpgi872 1 154034105 to 154034257 152 CpG island CpG island 872
A830008E24Rik 1 154037597 to 154117951 80354 - lincRNA gene RIKEN cDNA A830008E24 gene
Gm46165 1 154063544 to 154112909 49365 + lncRNA gene predicted gene, 46165
Tssr9512 1 154078024 to 154078025 1 + TSS region transcription start site region 9512
Tssr9513 1 154078232 to 154078242 10 + TSS region transcription start site region 9513
Gm25336 1 154080095 to 154080199 104 - snoRNA gene predicted gene, 25336
Tssr14296 1 154080709 to 154080752 43 - TSS region transcription start site region 14296
Tssr14297 1 154116144 to 154116171 27 - TSS region transcription start site region 14297
Tssr14298 1 154116176 to 154116187 11 - TSS region transcription start site region 14298
Tssr14299 1 154117630 to 154117642 12 - TSS region transcription start site region 14299
Tssr14300 1 154117847 to 154117856 9 - TSS region transcription start site region 14300
Gm30388 1 154196312 to 154204040 7728 - lncRNA gene predicted gene, 30388
Zfp648 1 154201187 to 154205689 4502 + protein coding gene zinc finger protein 648
Tssr9514 1 154201552 to 154201560 8 + TSS region transcription start site region 9514
Tssr9515 1 154201565 to 154201577 12 + TSS region transcription start site region 9515
Cpgi873 1 154204663 to 154205654 991 CpG island CpG island 873
Tssr9516 1 154204879 to 154204890 11 + TSS region transcription start site region 9516
Tssr9517 1 154204906 to 154204919 13 + TSS region transcription start site region 9517
Tssr9518 1 154205147 to 154205149 2 + TSS region transcription start site region 9518
D1Mit42 1 154215380 to 154215632 252 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 42
4930452N14Rik 1 154241521 to 154256906 15385 - lincRNA gene RIKEN cDNA 4930452N14 gene
4930532M18Rik 1 154255689 to 154270416 14727 + lincRNA gene RIKEN cDNA 4930532M18 gene
Tssr9519 1 154256982 to 154256984 2 + TSS region transcription start site region 9519
Gm30465 1 154261674 to 154264071 2397 - lncRNA gene predicted gene, 30465
D1Mit450 1 154287720 to 154287837 117 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 450
D1Mit523 1 154304366 to 154304485 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-523
n-R5s220 1 154311408 to 154311527 119 - rRNA gene nuclear encoded rRNA 5S 220
Gm18727 1 154323056 to 154323608 552 - pseudogene predicted gene, 18727