Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:153119827-153699233

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D1Mit396 1 153121012 to 153121136 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 396
Lamc2 1 153122756 to 153186447 63691 - protein coding gene laminin, gamma 2
Tssr14247 1 153127132 to 153127156 24 - TSS region transcription start site region 14247
Tssr14248 1 153130082 to 153130092 10 - TSS region transcription start site region 14248
Lamc2Dcr1a 1 153130839 to 153130959 120 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 1a
Gm17964 1 153132689 to 153133496 807 - pseudogene predicted gene, 17964
Tssr14249 1 153140998 to 153141003 5 - TSS region transcription start site region 14249
Cpgi864 1 153185770 to 153186467 697 CpG island CpG island 864
Tssr14250 1 153186011 to 153186056 45 - TSS region transcription start site region 14250
Tssr14251 1 153186071 to 153186092 21 - TSS region transcription start site region 14251
Tssr14252 1 153186102 to 153186122 20 - TSS region transcription start site region 14252
Tssr14253 1 153186125 to 153186136 11 - TSS region transcription start site region 14253
Tssr14254 1 153186142 to 153186155 13 - TSS region transcription start site region 14254
Lamc1 1 153218922 to 153332786 113864 - protein coding gene laminin, gamma 1
Mdq2 1 153235430 to 153235430 0 QTL mammary ductal QTL 2
Tssr14255 1 153249101 to 153249147 46 - TSS region transcription start site region 14255
Tssr14256 1 153262467 to 153262485 18 - TSS region transcription start site region 14256
Gm38009 1 153283850 to 153287190 3340 - unclassified gene predicted gene, 38009
Tssr9452 1 153300757 to 153300773 16 + TSS region transcription start site region 9452
Tssr14257 1 153302451 to 153302459 8 - TSS region transcription start site region 14257
Tssr9453 1 153305017 to 153305029 12 + TSS region transcription start site region 9453
Gm8818 1 153305432 to 153306478 1046 + pseudogene predicted pseudogene 8818
Cpgi865 1 153331894 to 153333644 1750 CpG island CpG island 865
Tssr14258 1 153332699 to 153332722 23 - TSS region transcription start site region 14258
Tssr14259 1 153332724 to 153332804 80 - TSS region transcription start site region 14259
Tssr14260 1 153332809 to 153332820 11 - TSS region transcription start site region 14260
Tssr14261 1 153332885 to 153332894 9 - TSS region transcription start site region 14261
Tssr14262 1 153332916 to 153332927 11 - TSS region transcription start site region 14262
Tssr14263 1 153332960 to 153332967 7 - TSS region transcription start site region 14263
Tssr14264 1 153332996 to 153333013 17 - TSS region transcription start site region 14264
Tssr14265 1 153333021 to 153333028 7 - TSS region transcription start site region 14265
D1Mit43 1 153334204 to 153334348 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 43
Obsty1 1 153334204 to 153334348 144 QTL obesity 1
Tssr9454 1 153351344 to 153351350 6 + TSS region transcription start site region 9454
Tssr9455 1 153376961 to 153376978 17 + TSS region transcription start site region 9455
Gm46246 1 153377857 to 153397005 19148 - lncRNA gene predicted gene, 46246
E330020D12Rik 1 153404827 to 153414233 9406 - lncRNA gene Riken cDNA E330020D12 gene
Tssr9456 1 153406481 to 153406501 20 + TSS region transcription start site region 9456
Tssr14266 1 153406520 to 153406543 23 - TSS region transcription start site region 14266
Tssr14267 1 153407784 to 153407790 6 - TSS region transcription start site region 14267
Tssr14268 1 153414227 to 153414233 6 - TSS region transcription start site region 14268
Tssr14269 1 153415131 to 153415161 30 - TSS region transcription start site region 14269
Cpgi866 1 153424879 to 153425640 761 CpG island CpG island 866
Shcbp1l 1 153425162 to 153452574 27412 + protein coding gene Shc SH2-domain binding protein 1-like
Tssr9457 1 153425165 to 153425177 12 + TSS region transcription start site region 9457
Tssr9458 1 153425181 to 153425219 38 + TSS region transcription start site region 9458
Gm25588 1 153440079 to 153440218 139 + snoRNA gene predicted gene, 25588
Gm37669 1 153443481 to 153444300 819 + unclassified gene predicted gene, 37669
Dhx9 1 153455758 to 153487660 31902 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 9
n-TIaat13 1 153458664 to 153458736 72 + tRNA gene nuclear encoded tRNA isoleucine 13 (anticodon TAT)
Cpgi867 1 153486782 to 153487895 1113 CpG island CpG island 867
Tssr9459 1 153486896 to 153486921 25 + TSS region transcription start site region 9459
Tssr14270 1 153487639 to 153487662 23 - TSS region transcription start site region 14270
Tssr14271 1 153487671 to 153487681 10 - TSS region transcription start site region 14271
Tssr14272 1 153487684 to 153487690 6 - TSS region transcription start site region 14272
Tssr9460 1 153487776 to 153487823 47 + TSS region transcription start site region 9460
Npl 1 153503016 to 153549714 46698 - protein coding gene N-acetylneuraminate pyruvate lyase
Gm46164 1 153505837 to 153508069 2232 - protein coding gene predicted gene, 46164
Tssr14273 1 153518944 to 153518959 15 - TSS region transcription start site region 14273
Tssr14274 1 153545341 to 153545374 33 - TSS region transcription start site region 14274
Tssr14275 1 153545384 to 153545396 12 - TSS region transcription start site region 14275
Cpgi868 1 153549485 to 153549861 376 CpG island CpG island 868
Tssr14276 1 153549697 to 153549724 27 - TSS region transcription start site region 14276
Tssr14277 1 153549734 to 153549745 11 - TSS region transcription start site region 14277
Tssr14278 1 153549818 to 153549828 10 - TSS region transcription start site region 14278
Tssr14279 1 153549838 to 153549855 17 - TSS region transcription start site region 14279
Tssr14280 1 153550045 to 153550081 36 - TSS region transcription start site region 14280
Gm6652 1 153619604 to 153620673 1069 - pseudogene predicted gene 6652
Tssr14281 1 153620727 to 153620736 9 - TSS region transcription start site region 14281
Cpgi869 1 153652857 to 153653253 396 CpG island CpG island 869
Tssr9461 1 153652930 to 153652931 1 + TSS region transcription start site region 9461
Tssr9462 1 153652943 to 153652954 11 + TSS region transcription start site region 9462
Rgs8 1 153652953 to 153697669 44716 + protein coding gene regulator of G-protein signaling 8
Tssr9463 1 153653106 to 153653176 70 + TSS region transcription start site region 9463
Tssr9464 1 153665282 to 153665325 43 + TSS region transcription start site region 9464
Tssr9465 1 153665490 to 153665504 14 + TSS region transcription start site region 9465
Tssr9466 1 153665587 to 153665595 8 + TSS region transcription start site region 9466
Tssr9467 1 153665627 to 153665653 26 + TSS region transcription start site region 9467
Tssr9468 1 153665666 to 153665679 13 + TSS region transcription start site region 9468
Tssr9469 1 153667503 to 153667512 9 + TSS region transcription start site region 9469
Tssr9470 1 153667635 to 153667640 5 + TSS region transcription start site region 9470
Tssr9471 1 153667670 to 153667676 6 + TSS region transcription start site region 9471
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
D1Mit104 1 153681660 to 153681816 156 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 104
Ssial1 1 153681816 to 63880843 -89800973 QTL susceptibility to sialadenitis 1
Gm29529 1 153690391 to 153692656 2265 - antisense lncRNA gene predicted gene 29529
Tssr9472 1 153695333 to 153695339 6 + TSS region transcription start site region 9472
Tssr9473 1 153695366 to 153695374 8 + TSS region transcription start site region 9473
Tssr9474 1 153695495 to 153695523 28 + TSS region transcription start site region 9474
Tssr9475 1 153696483 to 153696502 19 + TSS region transcription start site region 9475