Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:152859993-153214261

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smg7 1 152836995 to 152902646 65651 - protein coding gene Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr14239 1 152871186 to 152871230 44 - TSS region transcription start site region 14239
Gm28791 1 152878520 to 152880298 1778 - sense intronic lncRNA gene predicted gene 28791
Tssr14240 1 152880269 to 152880273 4 - TSS region transcription start site region 14240
Tssr14241 1 152882814 to 152882817 3 - TSS region transcription start site region 14241
D1Mit502 1 152901644 to 152901761 117 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 502
Cpgi860 1 152901733 to 152904104 2371 CpG island CpG island 860
Tssr14242 1 152902628 to 152902669 41 - TSS region transcription start site region 14242
Tssr14243 1 152902736 to 152902750 14 - TSS region transcription start site region 14243
Tssr14244 1 152902757 to 152902779 22 - TSS region transcription start site region 14244
Tssr9437 1 152902844 to 152902873 29 + TSS region transcription start site region 9437
Tssr9438 1 152902897 to 152902922 25 + TSS region transcription start site region 9438
Tssr14245 1 152903063 to 152903087 24 - TSS region transcription start site region 14245
Tssr14246 1 152903088 to 152903118 30 - TSS region transcription start site region 14246
Tssr9439 1 152903803 to 152903814 11 + TSS region transcription start site region 9439
Cpgi861 1 152904686 to 152904858 172 CpG island CpG island 861
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
Skts8 1 152919071 to 152919261 190 QTL skin tumor susceptibility 8
D1Mit47 1 152919071 to 152919261 190 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 47
1700040K01Rik 1 152936604 to 152937041 437 + lncRNA gene RIKEN cDNA 1700040K01 gene
Gm8976 1 152949395 to 152950097 702 - pseudogene predicted gene 8976
Cpgi862 1 152954811 to 152956457 1646 CpG island CpG island 862
Tssr9440 1 152954966 to 152955059 93 + TSS region transcription start site region 9440
Nmnat2 1 152954993 to 153119261 164268 + protein coding gene nicotinamide nucleotide adenylyltransferase 2
D1Mit500 1 153002150 to 153002264 114 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 500
Lore8 1 153002150 to 153002264 114 QTL loss of righting induced by ethanol 8
D1Dcr12 1 153002158 to 153002254 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 12
Tssr9441 1 153009680 to 153009687 7 + TSS region transcription start site region 9441
D1Ertd182e 1 153039213 to 153039424 211 DNA segment DNA segment, Chr 1, ERATO Doi 182, expressed
Gm28960 1 153066481 to 153089507 23026 - antisense lncRNA gene predicted gene 28960
Cpgi863 1 153071703 to 153071876 173 CpG island CpG island 863
Tssr9442 1 153073694 to 153073729 35 + TSS region transcription start site region 9442
Tssr9443 1 153076422 to 153076426 4 + TSS region transcription start site region 9443
Tssr9444 1 153085616 to 153085624 8 + TSS region transcription start site region 9444
Tssr9445 1 153090322 to 153090365 43 + TSS region transcription start site region 9445
Tssr9446 1 153093461 to 153093504 43 + TSS region transcription start site region 9446
Tssr9447 1 153093950 to 153093990 40 + TSS region transcription start site region 9447
D1Dcr4 1 153094962 to 153095057 95 DNA segment DNA segment, Chr 1, Derry C. Roopenian 4
Tssr9448 1 153099357 to 153099360 3 + TSS region transcription start site region 9448
Tssr9449 1 153115908 to 153115931 23 + TSS region transcription start site region 9449
Tssr9450 1 153116035 to 153116049 14 + TSS region transcription start site region 9450
Tssr9451 1 153116569 to 153116573 4 + TSS region transcription start site region 9451
D1Mit396 1 153121012 to 153121136 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 396
Lamc2 1 153122756 to 153186447 63691 - protein coding gene laminin, gamma 2
Tssr14247 1 153127132 to 153127156 24 - TSS region transcription start site region 14247
Tssr14248 1 153130082 to 153130092 10 - TSS region transcription start site region 14248
Lamc2Dcr1a 1 153130839 to 153130959 120 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 1a
Gm17964 1 153132689 to 153133496 807 - pseudogene predicted gene, 17964
Tssr14249 1 153140998 to 153141003 5 - TSS region transcription start site region 14249
Cpgi864 1 153185770 to 153186467 697 CpG island CpG island 864
Tssr14250 1 153186011 to 153186056 45 - TSS region transcription start site region 14250
Tssr14251 1 153186071 to 153186092 21 - TSS region transcription start site region 14251
Tssr14252 1 153186102 to 153186122 20 - TSS region transcription start site region 14252
Tssr14253 1 153186125 to 153186136 11 - TSS region transcription start site region 14253
Tssr14254 1 153186142 to 153186155 13 - TSS region transcription start site region 14254