Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:152802467-153722485

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ncf2 1 152800194 to 152836991 36797 + protein coding gene neutrophil cytosolic factor 2
Tssr9423 1 152807772 to 152807790 18 + TSS region transcription start site region 9423
Tssr9424 1 152807819 to 152807826 7 + TSS region transcription start site region 9424
Tssr9425 1 152807827 to 152807876 49 + TSS region transcription start site region 9425
Tssr9426 1 152807877 to 152807898 21 + TSS region transcription start site region 9426
Tssr9427 1 152807905 to 152807916 11 + TSS region transcription start site region 9427
Tssr9428 1 152807918 to 152807934 16 + TSS region transcription start site region 9428
Tssr9429 1 152807948 to 152807959 11 + TSS region transcription start site region 9429
Tssr14234 1 152808310 to 152808313 3 - TSS region transcription start site region 14234
Tssr14235 1 152809924 to 152809929 5 - TSS region transcription start site region 14235
Tssr9430 1 152810107 to 152810120 13 + TSS region transcription start site region 9430
Tssr14236 1 152810609 to 152810617 8 - TSS region transcription start site region 14236
Tssr9431 1 152811416 to 152811441 25 + TSS region transcription start site region 9431
Tssr9432 1 152811611 to 152811631 20 + TSS region transcription start site region 9432
Tssr9433 1 152812473 to 152812492 19 + TSS region transcription start site region 9433
Tssr9434 1 152812505 to 152812517 12 + TSS region transcription start site region 9434
Tssr9435 1 152817441 to 152817445 4 + TSS region transcription start site region 9435
Tssr9436 1 152824753 to 152824758 5 + TSS region transcription start site region 9436
Smg7 1 152836995 to 152902646 65651 - protein coding gene Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr14237 1 152837501 to 152837518 17 - TSS region transcription start site region 14237
Tssr14238 1 152857409 to 152857421 12 - TSS region transcription start site region 14238
Tssr14239 1 152871186 to 152871230 44 - TSS region transcription start site region 14239
Gm28791 1 152878520 to 152880298 1778 - sense intronic lncRNA gene predicted gene 28791
Tssr14240 1 152880269 to 152880273 4 - TSS region transcription start site region 14240
Tssr14241 1 152882814 to 152882817 3 - TSS region transcription start site region 14241
D1Mit502 1 152901644 to 152901761 117 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 502
Cpgi860 1 152901733 to 152904104 2371 CpG island CpG island 860
Tssr14242 1 152902628 to 152902669 41 - TSS region transcription start site region 14242
Tssr14243 1 152902736 to 152902750 14 - TSS region transcription start site region 14243
Tssr14244 1 152902757 to 152902779 22 - TSS region transcription start site region 14244
Tssr9437 1 152902844 to 152902873 29 + TSS region transcription start site region 9437
Tssr9438 1 152902897 to 152902922 25 + TSS region transcription start site region 9438
Tssr14245 1 152903063 to 152903087 24 - TSS region transcription start site region 14245
Tssr14246 1 152903088 to 152903118 30 - TSS region transcription start site region 14246
Tssr9439 1 152903803 to 152903814 11 + TSS region transcription start site region 9439
Cpgi861 1 152904686 to 152904858 172 CpG island CpG island 861
D1Mit47 1 152919071 to 152919261 190 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 47
Skts8 1 152919071 to 152919261 190 QTL skin tumor susceptibility 8
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
1700040K01Rik 1 152936604 to 152937041 437 + lncRNA gene RIKEN cDNA 1700040K01 gene
Gm8976 1 152949395 to 152950097 702 - pseudogene predicted gene 8976
Cpgi862 1 152954811 to 152956457 1646 CpG island CpG island 862
Tssr9440 1 152954966 to 152955059 93 + TSS region transcription start site region 9440
Nmnat2 1 152954993 to 153119261 164268 + protein coding gene nicotinamide nucleotide adenylyltransferase 2
D1Mit500 1 153002150 to 153002264 114 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 500
Lore8 1 153002150 to 153002264 114 QTL loss of righting induced by ethanol 8
D1Dcr12 1 153002158 to 153002254 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 12
Tssr9441 1 153009680 to 153009687 7 + TSS region transcription start site region 9441
D1Ertd182e 1 153039213 to 153039424 211 DNA segment DNA segment, Chr 1, ERATO Doi 182, expressed
Gm28960 1 153066481 to 153089507 23026 - antisense lncRNA gene predicted gene 28960
Cpgi863 1 153071703 to 153071876 173 CpG island CpG island 863
Tssr9442 1 153073694 to 153073729 35 + TSS region transcription start site region 9442
Tssr9443 1 153076422 to 153076426 4 + TSS region transcription start site region 9443
Tssr9444 1 153085616 to 153085624 8 + TSS region transcription start site region 9444
Tssr9445 1 153090322 to 153090365 43 + TSS region transcription start site region 9445
Tssr9446 1 153093461 to 153093504 43 + TSS region transcription start site region 9446
Tssr9447 1 153093950 to 153093990 40 + TSS region transcription start site region 9447
D1Dcr4 1 153094962 to 153095057 95 DNA segment DNA segment, Chr 1, Derry C. Roopenian 4
Tssr9448 1 153099357 to 153099360 3 + TSS region transcription start site region 9448
Tssr9449 1 153115908 to 153115931 23 + TSS region transcription start site region 9449
Tssr9450 1 153116035 to 153116049 14 + TSS region transcription start site region 9450
Tssr9451 1 153116569 to 153116573 4 + TSS region transcription start site region 9451
D1Mit396 1 153121012 to 153121136 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 396
Lamc2 1 153122756 to 153186447 63691 - protein coding gene laminin, gamma 2
Tssr14247 1 153127132 to 153127156 24 - TSS region transcription start site region 14247
Tssr14248 1 153130082 to 153130092 10 - TSS region transcription start site region 14248
Lamc2Dcr1a 1 153130839 to 153130959 120 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 1a
Gm17964 1 153132689 to 153133496 807 - pseudogene predicted gene, 17964
Tssr14249 1 153140998 to 153141003 5 - TSS region transcription start site region 14249
Cpgi864 1 153185770 to 153186467 697 CpG island CpG island 864
Tssr14250 1 153186011 to 153186056 45 - TSS region transcription start site region 14250
Tssr14251 1 153186071 to 153186092 21 - TSS region transcription start site region 14251
Tssr14252 1 153186102 to 153186122 20 - TSS region transcription start site region 14252
Tssr14253 1 153186125 to 153186136 11 - TSS region transcription start site region 14253
Tssr14254 1 153186142 to 153186155 13 - TSS region transcription start site region 14254
Lamc1 1 153218922 to 153332786 113864 - protein coding gene laminin, gamma 1
Mdq2 1 153235430 to 153235430 0 QTL mammary ductal QTL 2
Tssr14255 1 153249101 to 153249147 46 - TSS region transcription start site region 14255
Tssr14256 1 153262467 to 153262485 18 - TSS region transcription start site region 14256
Gm38009 1 153283850 to 153287190 3340 - unclassified gene predicted gene, 38009
Tssr9452 1 153300757 to 153300773 16 + TSS region transcription start site region 9452
Tssr14257 1 153302451 to 153302459 8 - TSS region transcription start site region 14257
Tssr9453 1 153305017 to 153305029 12 + TSS region transcription start site region 9453
Gm8818 1 153305432 to 153306478 1046 + pseudogene predicted pseudogene 8818
Cpgi865 1 153331894 to 153333644 1750 CpG island CpG island 865
Tssr14258 1 153332699 to 153332722 23 - TSS region transcription start site region 14258
Tssr14259 1 153332724 to 153332804 80 - TSS region transcription start site region 14259
Tssr14260 1 153332809 to 153332820 11 - TSS region transcription start site region 14260
Tssr14261 1 153332885 to 153332894 9 - TSS region transcription start site region 14261
Tssr14262 1 153332916 to 153332927 11 - TSS region transcription start site region 14262
Tssr14263 1 153332960 to 153332967 7 - TSS region transcription start site region 14263
Tssr14264 1 153332996 to 153333013 17 - TSS region transcription start site region 14264
Tssr14265 1 153333021 to 153333028 7 - TSS region transcription start site region 14265
D1Mit43 1 153334204 to 153334348 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 43
Obsty1 1 153334204 to 153334348 144 QTL obesity 1
Tssr9454 1 153351344 to 153351350 6 + TSS region transcription start site region 9454
Tssr9455 1 153376961 to 153376978 17 + TSS region transcription start site region 9455
Gm46246 1 153377857 to 153397005 19148 - lncRNA gene predicted gene, 46246
E330020D12Rik 1 153404827 to 153414233 9406 - lncRNA gene Riken cDNA E330020D12 gene
Tssr9456 1 153406481 to 153406501 20 + TSS region transcription start site region 9456
Tssr14266 1 153406520 to 153406543 23 - TSS region transcription start site region 14266
Tssr14267 1 153407784 to 153407790 6 - TSS region transcription start site region 14267
Tssr14268 1 153414227 to 153414233 6 - TSS region transcription start site region 14268
Tssr14269 1 153415131 to 153415161 30 - TSS region transcription start site region 14269
Cpgi866 1 153424879 to 153425640 761 CpG island CpG island 866
Shcbp1l 1 153425162 to 153452574 27412 + protein coding gene Shc SH2-domain binding protein 1-like
Tssr9457 1 153425165 to 153425177 12 + TSS region transcription start site region 9457
Tssr9458 1 153425181 to 153425219 38 + TSS region transcription start site region 9458
Gm25588 1 153440079 to 153440218 139 + snoRNA gene predicted gene, 25588
Gm37669 1 153443481 to 153444300 819 + unclassified gene predicted gene, 37669
Dhx9 1 153455758 to 153487660 31902 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 9
n-TIaat13 1 153458664 to 153458736 72 + tRNA gene nuclear encoded tRNA isoleucine 13 (anticodon TAT)
Cpgi867 1 153486782 to 153487895 1113 CpG island CpG island 867
Tssr9459 1 153486896 to 153486921 25 + TSS region transcription start site region 9459
Tssr14270 1 153487639 to 153487662 23 - TSS region transcription start site region 14270
Tssr14271 1 153487671 to 153487681 10 - TSS region transcription start site region 14271
Tssr14272 1 153487684 to 153487690 6 - TSS region transcription start site region 14272
Tssr9460 1 153487776 to 153487823 47 + TSS region transcription start site region 9460
Npl 1 153503016 to 153549714 46698 - protein coding gene N-acetylneuraminate pyruvate lyase
Gm46164 1 153505837 to 153508069 2232 - protein coding gene predicted gene, 46164
Tssr14273 1 153518944 to 153518959 15 - TSS region transcription start site region 14273
Tssr14274 1 153545341 to 153545374 33 - TSS region transcription start site region 14274
Tssr14275 1 153545384 to 153545396 12 - TSS region transcription start site region 14275
Cpgi868 1 153549485 to 153549861 376 CpG island CpG island 868
Tssr14276 1 153549697 to 153549724 27 - TSS region transcription start site region 14276
Tssr14277 1 153549734 to 153549745 11 - TSS region transcription start site region 14277
Tssr14278 1 153549818 to 153549828 10 - TSS region transcription start site region 14278
Tssr14279 1 153549838 to 153549855 17 - TSS region transcription start site region 14279
Tssr14280 1 153550045 to 153550081 36 - TSS region transcription start site region 14280
Gm6652 1 153619604 to 153620673 1069 - pseudogene predicted gene 6652
Tssr14281 1 153620727 to 153620736 9 - TSS region transcription start site region 14281
Cpgi869 1 153652857 to 153653253 396 CpG island CpG island 869
Tssr9461 1 153652930 to 153652931 1 + TSS region transcription start site region 9461
Tssr9462 1 153652943 to 153652954 11 + TSS region transcription start site region 9462
Rgs8 1 153652953 to 153697669 44716 + protein coding gene regulator of G-protein signaling 8
Tssr9463 1 153653106 to 153653176 70 + TSS region transcription start site region 9463
Tssr9464 1 153665282 to 153665325 43 + TSS region transcription start site region 9464
Tssr9465 1 153665490 to 153665504 14 + TSS region transcription start site region 9465
Tssr9466 1 153665587 to 153665595 8 + TSS region transcription start site region 9466
Tssr9467 1 153665627 to 153665653 26 + TSS region transcription start site region 9467
Tssr9468 1 153665666 to 153665679 13 + TSS region transcription start site region 9468
Tssr9469 1 153667503 to 153667512 9 + TSS region transcription start site region 9469
Tssr9470 1 153667635 to 153667640 5 + TSS region transcription start site region 9470
Tssr9471 1 153667670 to 153667676 6 + TSS region transcription start site region 9471
Ctex 1 153681660 to 175641372 21959712 QTL Ctla4 expression QTL
D1Mit104 1 153681660 to 153681816 156 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 104
Ssial1 1 153681816 to 63880843 -89800973 QTL susceptibility to sialadenitis 1
Gm29529 1 153690391 to 153692656 2265 - antisense lncRNA gene predicted gene 29529
Tssr9472 1 153695333 to 153695339 6 + TSS region transcription start site region 9472
Tssr9473 1 153695366 to 153695374 8 + TSS region transcription start site region 9473
Tssr9474 1 153695495 to 153695523 28 + TSS region transcription start site region 9474
Tssr9475 1 153696483 to 153696502 19 + TSS region transcription start site region 9475
5530400K19Rik 1 153714654 to 153716569 1915 + unclassified gene RIKEN cDNA 5530400K19 gene
C230024C17Rik 1 153721240 to 153737829 16589 - lincRNA gene RIKEN cDNA C230024C17 gene