Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:152339686-153469858

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tsen15 1 152370735 to 152386682 15947 - protein coding gene tRNA splicing endonuclease subunit 15
Cpgi855 1 152386191 to 152386871 680 CpG island CpG island 855
Tssr14214 1 152386589 to 152386610 21 - TSS region transcription start site region 14214
Tssr14215 1 152386626 to 152386666 40 - TSS region transcription start site region 14215
Tssr14216 1 152386675 to 152386684 9 - TSS region transcription start site region 14216
Tssr14217 1 152386689 to 152386694 5 - TSS region transcription start site region 14217
Cpgi856 1 152399802 to 152400697 895 CpG island CpG island 856
Tssr9408 1 152399802 to 152399809 7 + TSS region transcription start site region 9408
Tssr9409 1 152399824 to 152399881 57 + TSS region transcription start site region 9409
Colgalt2 1 152399830 to 152510695 110865 + protein coding gene collagen beta(1-O)galactosyltransferase 2
Tssr9410 1 152399882 to 152399891 9 + TSS region transcription start site region 9410
Tssr9411 1 152399895 to 152399908 13 + TSS region transcription start site region 9411
Tssr245 1 152400704 to 152400739 35 - TSS region transcription start site region 245
Gm15618 1 152407074 to 152407525 451 - pseudogene predicted gene 15618
Tssr14218 1 152469386 to 152469389 3 - TSS region transcription start site region 14218
Tssr14219 1 152497645 to 152497657 12 - TSS region transcription start site region 14219
Rgl1 1 152516762 to 152766270 249508 - protein coding gene ral guanine nucleotide dissociation stimulator,-like 1
Tssr14220 1 152524828 to 152524844 16 - TSS region transcription start site region 14220
Tssr14221 1 152536450 to 152536485 35 - TSS region transcription start site region 14221
Tssr9412 1 152540858 to 152540905 47 + TSS region transcription start site region 9412
D1Ertd148e 1 152547270 to 152547470 200 DNA segment DNA segment, Chr 1, ERATO Doi 148, expressed
Tssr14222 1 152550602 to 152550616 14 - TSS region transcription start site region 14222
Tssr14223 1 152552594 to 152552598 4 - TSS region transcription start site region 14223
Tssr14224 1 152559743 to 152559748 5 - TSS region transcription start site region 14224
Tssr14225 1 152592762 to 152592779 17 - TSS region transcription start site region 14225
Tssr14226 1 152615161 to 152615167 6 - TSS region transcription start site region 14226
Cpgi857 1 152624566 to 152625640 1074 CpG island CpG island 857
Tssr14227 1 152625076 to 152625085 9 - TSS region transcription start site region 14227
Tssr14228 1 152625124 to 152625138 14 - TSS region transcription start site region 14228
Tssr14229 1 152625153 to 152625174 21 - TSS region transcription start site region 14229
Tssr14230 1 152625212 to 152625220 8 - TSS region transcription start site region 14230
Gm46163 1 152625720 to 152631875 6155 - lncRNA gene predicted gene, 46163
D1Mit501 1 152626381 to 152626502 121 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 501
D1Mit521 1 152674408 to 152674553 145 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-521
Tssr9413 1 152682992 to 152683003 11 + TSS region transcription start site region 9413
Tssr9414 1 152683009 to 152683026 17 + TSS region transcription start site region 9414
Tssr246 1 152683071 to 152683091 20 + TSS region transcription start site region 246
Gm15479 1 152684026 to 152687501 3475 - sense intronic lncRNA gene predicted gene 15479
Gm7278 1 152729162 to 152730559 1397 - pseudogene predicted gene 7278
Cpgi858 1 152730829 to 152730984 155 CpG island CpG island 858
Gm28792 1 152731206 to 152751824 20618 - sense intronic lncRNA gene predicted gene 28792
Tssr9415 1 152750523 to 152750526 3 + TSS region transcription start site region 9415
Tssr9416 1 152750527 to 152750553 26 + TSS region transcription start site region 9416
Apobec4 1 152750551 to 152757544 6993 + protein coding gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
Tssr9417 1 152750554 to 152750564 10 + TSS region transcription start site region 9417
Cpgi859 1 152765903 to 152767272 1369 CpG island CpG island 859
Tssr14231 1 152766281 to 152766319 38 - TSS region transcription start site region 14231
Tssr14232 1 152766323 to 152766352 29 - TSS region transcription start site region 14232
Tssr14233 1 152766356 to 152766367 11 - TSS region transcription start site region 14233
Tssr9418 1 152766540 to 152766551 11 + TSS region transcription start site region 9418
Arpc5 1 152766542 to 152775580 9038 + protein coding gene actin related protein 2/3 complex, subunit 5
Tssr9419 1 152766591 to 152766687 96 + TSS region transcription start site region 9419
Tssr9420 1 152766693 to 152766710 17 + TSS region transcription start site region 9420
Tssr9421 1 152767989 to 152767994 5 + TSS region transcription start site region 9421
Tssr9422 1 152791895 to 152791904 9 + TSS region transcription start site region 9422
Ncf2 1 152800194 to 152836991 36797 + protein coding gene neutrophil cytosolic factor 2
Tssr9423 1 152807772 to 152807790 18 + TSS region transcription start site region 9423
Tssr9424 1 152807819 to 152807826 7 + TSS region transcription start site region 9424
Tssr9425 1 152807827 to 152807876 49 + TSS region transcription start site region 9425
Tssr9426 1 152807877 to 152807898 21 + TSS region transcription start site region 9426
Tssr9427 1 152807905 to 152807916 11 + TSS region transcription start site region 9427
Tssr9428 1 152807918 to 152807934 16 + TSS region transcription start site region 9428
Tssr9429 1 152807948 to 152807959 11 + TSS region transcription start site region 9429
Tssr14234 1 152808310 to 152808313 3 - TSS region transcription start site region 14234
Tssr14235 1 152809924 to 152809929 5 - TSS region transcription start site region 14235
Tssr9430 1 152810107 to 152810120 13 + TSS region transcription start site region 9430
Tssr14236 1 152810609 to 152810617 8 - TSS region transcription start site region 14236
Tssr9431 1 152811416 to 152811441 25 + TSS region transcription start site region 9431
Tssr9432 1 152811611 to 152811631 20 + TSS region transcription start site region 9432
Tssr9433 1 152812473 to 152812492 19 + TSS region transcription start site region 9433
Tssr9434 1 152812505 to 152812517 12 + TSS region transcription start site region 9434
Tssr9435 1 152817441 to 152817445 4 + TSS region transcription start site region 9435
Tssr9436 1 152824753 to 152824758 5 + TSS region transcription start site region 9436
Smg7 1 152836995 to 152902646 65651 - protein coding gene Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr14237 1 152837501 to 152837518 17 - TSS region transcription start site region 14237
Tssr14238 1 152857409 to 152857421 12 - TSS region transcription start site region 14238
Tssr14239 1 152871186 to 152871230 44 - TSS region transcription start site region 14239
Gm28791 1 152878520 to 152880298 1778 - sense intronic lncRNA gene predicted gene 28791
Tssr14240 1 152880269 to 152880273 4 - TSS region transcription start site region 14240
Tssr14241 1 152882814 to 152882817 3 - TSS region transcription start site region 14241
D1Mit502 1 152901644 to 152901761 117 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 502
Cpgi860 1 152901733 to 152904104 2371 CpG island CpG island 860
Tssr14242 1 152902628 to 152902669 41 - TSS region transcription start site region 14242
Tssr14243 1 152902736 to 152902750 14 - TSS region transcription start site region 14243
Tssr14244 1 152902757 to 152902779 22 - TSS region transcription start site region 14244
Tssr9437 1 152902844 to 152902873 29 + TSS region transcription start site region 9437
Tssr9438 1 152902897 to 152902922 25 + TSS region transcription start site region 9438
Tssr14245 1 152903063 to 152903087 24 - TSS region transcription start site region 14245
Tssr14246 1 152903088 to 152903118 30 - TSS region transcription start site region 14246
Tssr9439 1 152903803 to 152903814 11 + TSS region transcription start site region 9439
Cpgi861 1 152904686 to 152904858 172 CpG island CpG island 861
D1Mit47 1 152919071 to 152919261 190 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 47
Skts8 1 152919071 to 152919261 190 QTL skin tumor susceptibility 8
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
1700040K01Rik 1 152936604 to 152937041 437 + lncRNA gene RIKEN cDNA 1700040K01 gene
Gm8976 1 152949395 to 152950097 702 - pseudogene predicted gene 8976
Cpgi862 1 152954811 to 152956457 1646 CpG island CpG island 862
Tssr9440 1 152954966 to 152955059 93 + TSS region transcription start site region 9440
Nmnat2 1 152954993 to 153119261 164268 + protein coding gene nicotinamide nucleotide adenylyltransferase 2
D1Mit500 1 153002150 to 153002264 114 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 500
Lore8 1 153002150 to 153002264 114 QTL loss of righting induced by ethanol 8
D1Dcr12 1 153002158 to 153002254 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 12
Tssr9441 1 153009680 to 153009687 7 + TSS region transcription start site region 9441
D1Ertd182e 1 153039213 to 153039424 211 DNA segment DNA segment, Chr 1, ERATO Doi 182, expressed
Gm28960 1 153066481 to 153089507 23026 - antisense lncRNA gene predicted gene 28960
Cpgi863 1 153071703 to 153071876 173 CpG island CpG island 863
Tssr9442 1 153073694 to 153073729 35 + TSS region transcription start site region 9442
Tssr9443 1 153076422 to 153076426 4 + TSS region transcription start site region 9443
Tssr9444 1 153085616 to 153085624 8 + TSS region transcription start site region 9444
Tssr9445 1 153090322 to 153090365 43 + TSS region transcription start site region 9445
Tssr9446 1 153093461 to 153093504 43 + TSS region transcription start site region 9446
Tssr9447 1 153093950 to 153093990 40 + TSS region transcription start site region 9447
D1Dcr4 1 153094962 to 153095057 95 DNA segment DNA segment, Chr 1, Derry C. Roopenian 4
Tssr9448 1 153099357 to 153099360 3 + TSS region transcription start site region 9448
Tssr9449 1 153115908 to 153115931 23 + TSS region transcription start site region 9449
Tssr9450 1 153116035 to 153116049 14 + TSS region transcription start site region 9450
Tssr9451 1 153116569 to 153116573 4 + TSS region transcription start site region 9451
D1Mit396 1 153121012 to 153121136 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 396
Lamc2 1 153122756 to 153186447 63691 - protein coding gene laminin, gamma 2
Tssr14247 1 153127132 to 153127156 24 - TSS region transcription start site region 14247
Tssr14248 1 153130082 to 153130092 10 - TSS region transcription start site region 14248
Lamc2Dcr1a 1 153130839 to 153130959 120 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 1a
Gm17964 1 153132689 to 153133496 807 - pseudogene predicted gene, 17964
Tssr14249 1 153140998 to 153141003 5 - TSS region transcription start site region 14249
Cpgi864 1 153185770 to 153186467 697 CpG island CpG island 864
Tssr14250 1 153186011 to 153186056 45 - TSS region transcription start site region 14250
Tssr14251 1 153186071 to 153186092 21 - TSS region transcription start site region 14251
Tssr14252 1 153186102 to 153186122 20 - TSS region transcription start site region 14252
Tssr14253 1 153186125 to 153186136 11 - TSS region transcription start site region 14253
Tssr14254 1 153186142 to 153186155 13 - TSS region transcription start site region 14254
Lamc1 1 153218922 to 153332786 113864 - protein coding gene laminin, gamma 1
Mdq2 1 153235430 to 153235430 0 QTL mammary ductal QTL 2
Tssr14255 1 153249101 to 153249147 46 - TSS region transcription start site region 14255
Tssr14256 1 153262467 to 153262485 18 - TSS region transcription start site region 14256
Gm38009 1 153283850 to 153287190 3340 - unclassified gene predicted gene, 38009
Tssr9452 1 153300757 to 153300773 16 + TSS region transcription start site region 9452
Tssr14257 1 153302451 to 153302459 8 - TSS region transcription start site region 14257
Tssr9453 1 153305017 to 153305029 12 + TSS region transcription start site region 9453
Gm8818 1 153305432 to 153306478 1046 + pseudogene predicted pseudogene 8818
Cpgi865 1 153331894 to 153333644 1750 CpG island CpG island 865
Tssr14258 1 153332699 to 153332722 23 - TSS region transcription start site region 14258
Tssr14259 1 153332724 to 153332804 80 - TSS region transcription start site region 14259
Tssr14260 1 153332809 to 153332820 11 - TSS region transcription start site region 14260
Tssr14261 1 153332885 to 153332894 9 - TSS region transcription start site region 14261
Tssr14262 1 153332916 to 153332927 11 - TSS region transcription start site region 14262
Tssr14263 1 153332960 to 153332967 7 - TSS region transcription start site region 14263
Tssr14264 1 153332996 to 153333013 17 - TSS region transcription start site region 14264
Tssr14265 1 153333021 to 153333028 7 - TSS region transcription start site region 14265
Obsty1 1 153334204 to 153334348 144 QTL obesity 1
D1Mit43 1 153334204 to 153334348 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 43
Tssr9454 1 153351344 to 153351350 6 + TSS region transcription start site region 9454
Tssr9455 1 153376961 to 153376978 17 + TSS region transcription start site region 9455
Gm46246 1 153377857 to 153397005 19148 - lncRNA gene predicted gene, 46246
E330020D12Rik 1 153404827 to 153414233 9406 - lncRNA gene Riken cDNA E330020D12 gene
Tssr9456 1 153406481 to 153406501 20 + TSS region transcription start site region 9456
Tssr14266 1 153406520 to 153406543 23 - TSS region transcription start site region 14266
Tssr14267 1 153407784 to 153407790 6 - TSS region transcription start site region 14267
Tssr14268 1 153414227 to 153414233 6 - TSS region transcription start site region 14268
Tssr14269 1 153415131 to 153415161 30 - TSS region transcription start site region 14269
Cpgi866 1 153424879 to 153425640 761 CpG island CpG island 866
Shcbp1l 1 153425162 to 153452574 27412 + protein coding gene Shc SH2-domain binding protein 1-like
Tssr9457 1 153425165 to 153425177 12 + TSS region transcription start site region 9457
Tssr9458 1 153425181 to 153425219 38 + TSS region transcription start site region 9458
Gm25588 1 153440079 to 153440218 139 + snoRNA gene predicted gene, 25588
Gm37669 1 153443481 to 153444300 819 + unclassified gene predicted gene, 37669
Dhx9 1 153455758 to 153487660 31902 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 9
n-TIaat13 1 153458664 to 153458736 72 + tRNA gene nuclear encoded tRNA isoleucine 13 (anticodon TAT)