Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:151405409-152105441

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Swt1 1 151367698 to 151428450 60752 - protein coding gene SWT1 RNA endoribonuclease homolog (S. cerevisiae)
Cpgi848 1 151427949 to 151429164 1215 CpG island CpG island 848
Tssr14187 1 151428324 to 151428401 77 - TSS region transcription start site region 14187
Tssr14188 1 151428403 to 151428414 11 - TSS region transcription start site region 14188
Tssr14189 1 151428440 to 151428474 34 - TSS region transcription start site region 14189
Trmt1l 1 151428542 to 151458161 29619 + protein coding gene tRNA methyltransferase 1 like
Tssr9386 1 151428612 to 151428718 106 + TSS region transcription start site region 9386
Tssr9387 1 151428725 to 151428736 11 + TSS region transcription start site region 9387
Mir7682 1 151442393 to 151442450 57 + miRNA gene microRNA 7682
Gm37893 1 151445305 to 151447741 2436 + unclassified gene predicted gene, 37893
Tssr9388 1 151454197 to 151454201 4 + TSS region transcription start site region 9388
Rnf2 1 151469406 to 151500922 31516 - protein coding gene ring finger protein 2
Tssr14190 1 151472099 to 151472110 11 - TSS region transcription start site region 14190
Tssr14191 1 151475699 to 151475730 31 - TSS region transcription start site region 14191
Gm36527 1 151496557 to 151499585 3028 - protein coding gene predicted gene, 36527
Tssr14192 1 151497695 to 151497697 2 - TSS region transcription start site region 14192
Tssr9389 1 151499908 to 151499925 17 + TSS region transcription start site region 9389
Tssr9390 1 151500002 to 151500013 11 + TSS region transcription start site region 9390
Cpgi849 1 151500024 to 151501312 1288 CpG island CpG island 849
Tssr14193 1 151500766 to 151500777 11 - TSS region transcription start site region 14193
Tssr14194 1 151500794 to 151500841 47 - TSS region transcription start site region 14194
Tssr14195 1 151500864 to 151500875 11 - TSS region transcription start site region 14195
Tssr14196 1 151500953 to 151500960 7 - TSS region transcription start site region 14196
Tssr14197 1 151500987 to 151500994 7 - TSS region transcription start site region 14197
Gm29072 1 151509224 to 151510092 868 + pseudogene predicted gene 29072
Tssr14198 1 151517974 to 151517982 8 - TSS region transcription start site region 14198
Gm19503 1 151520447 to 151520687 240 - pseudogene predicted gene, 19503
Tssr14199 1 151520775 to 151520776 1 - TSS region transcription start site region 14199
Tssr9391 1 151530738 to 151530757 19 + TSS region transcription start site region 9391
Gm28181 1 151549245 to 151550943 1698 - lincRNA gene predicted gene 28181
Cpgi850 1 151560627 to 151560796 169 CpG island CpG island 850
Tssr9392 1 151571133 to 151571185 52 + TSS region transcription start site region 9392
Cpgi851 1 151571153 to 151571851 698 CpG island CpG island 851
Fam129a 1 151571373 to 151721939 150566 + protein coding gene family with sequence similarity 129, member A
Tssr9393 1 151571429 to 151571440 11 + TSS region transcription start site region 9393
Tssr9394 1 151571441 to 151571471 30 + TSS region transcription start site region 9394
Tssr9395 1 151571481 to 151571492 11 + TSS region transcription start site region 9395
Tssr9396 1 151572241 to 151572245 4 + TSS region transcription start site region 9396
Tssr9397 1 151603573 to 151603577 4 + TSS region transcription start site region 9397
Tssr9398 1 151632350 to 151632353 3 + TSS region transcription start site region 9398
Tssr9399 1 151677172 to 151677182 10 + TSS region transcription start site region 9399
Tssr9400 1 151678000 to 151678008 8 + TSS region transcription start site region 9400
D1Mit447 1 151690384 to 151690676 292 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 447
Tssr9401 1 151718596 to 151718646 50 + TSS region transcription start site region 9401
Gm41969 1 151736847 to 151742766 5919 + lncRNA gene predicted gene, 41969
2810414N06Rik 1 151748949 to 151755018 6069 - lincRNA gene RIKEN cDNA 2810414N06 gene
Cpgi852 1 151754938 to 151756078 1140 CpG island CpG island 852
Tssr14200 1 151754990 to 151755031 41 - TSS region transcription start site region 14200
Tssr9402 1 151755339 to 151755393 54 + TSS region transcription start site region 9402
Edem3 1 151755371 to 151822051 66680 + protein coding gene ER degradation enhancer, mannosidase alpha-like 3
Tssr9403 1 151755409 to 151755441 32 + TSS region transcription start site region 9403
Tssr9404 1 151755452 to 151755463 11 + TSS region transcription start site region 9404
Gm25279 1 151854823 to 151854955 132 - snRNA gene predicted gene, 25279
Tssr9405 1 151872092 to 151872094 2 + TSS region transcription start site region 9405
Gm28610 1 151875419 to 151887063 11644 + antisense lncRNA gene predicted gene 28610
1700025G04Rik 1 151884524 to 152090320 205796 - protein coding gene RIKEN cDNA 1700025G04 gene
D1Mit513 1 151891826 to 151892010 184 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 513
Tssr14201 1 151920970 to 151920971 1 - TSS region transcription start site region 14201
Tssr14202 1 151945283 to 151945288 5 - TSS region transcription start site region 14202
Tssr14203 1 151947320 to 151947325 5 - TSS region transcription start site region 14203
Tssr9406 1 151947712 to 151947720 8 + TSS region transcription start site region 9406
Tssr14204 1 152042680 to 152042686 6 - TSS region transcription start site region 14204
Tssr14205 1 152053212 to 152053231 19 - TSS region transcription start site region 14205
Tssr14206 1 152055270 to 152055313 43 - TSS region transcription start site region 14206
Cpgi853 1 152089608 to 152091251 1643 CpG island CpG island 853
Tssr14207 1 152090145 to 152090167 22 - TSS region transcription start site region 14207
Tssr14208 1 152090181 to 152090209 28 - TSS region transcription start site region 14208
Tssr14209 1 152090241 to 152090254 13 - TSS region transcription start site region 14209
Tssr14210 1 152090259 to 152090307 48 - TSS region transcription start site region 14210
Tssr14211 1 152090308 to 152090332 24 - TSS region transcription start site region 14211