Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:151252639-155722662

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549 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr14177 1 151252809 to 151252852 43 - TSS region transcription start site region 14177
Gm24402 1 151260824 to 151260914 90 - snRNA gene predicted gene, 24402
Gm10138 1 151339604 to 151345231 5627 - antisense lncRNA gene predicted gene 10138
Cpgi847 1 151343982 to 151345479 1497 CpG island CpG island 847
Tssr9377 1 151344010 to 151344033 23 + TSS region transcription start site region 9377
Tssr14178 1 151344052 to 151344069 17 - TSS region transcription start site region 14178
Tssr14179 1 151344318 to 151344353 35 - TSS region transcription start site region 14179
Tssr14180 1 151344376 to 151344386 10 - TSS region transcription start site region 14180
Tssr14181 1 151344442 to 151344449 7 - TSS region transcription start site region 14181
Tssr9378 1 151344448 to 151344458 10 + TSS region transcription start site region 9378
Tssr9379 1 151344472 to 151344530 58 + TSS region transcription start site region 9379
Ivns1abp 1 151344477 to 151364422 19945 + protein coding gene influenza virus NS1A binding protein
Tssr9380 1 151344531 to 151344584 53 + TSS region transcription start site region 9380
Tssr14182 1 151345062 to 151345089 27 - TSS region transcription start site region 14182
Tssr14183 1 151345093 to 151345111 18 - TSS region transcription start site region 14183
Tssr14184 1 151345208 to 151345222 14 - TSS region transcription start site region 14184
Tssr14185 1 151345224 to 151345278 54 - TSS region transcription start site region 14185
Tssr14186 1 151345304 to 151345323 19 - TSS region transcription start site region 14186
Tssr9381 1 151345501 to 151345512 11 + TSS region transcription start site region 9381
Tssr9382 1 151354985 to 151354991 6 + TSS region transcription start site region 9382
Tssr9383 1 151358070 to 151358073 3 + TSS region transcription start site region 9383
Tssr9384 1 151360013 to 151360023 10 + TSS region transcription start site region 9384
Tssr9385 1 151363060 to 151363064 4 + TSS region transcription start site region 9385
Swt1 1 151367698 to 151428450 60752 - protein coding gene SWT1 RNA endoribonuclease homolog (S. cerevisiae)
Cpgi848 1 151427949 to 151429164 1215 CpG island CpG island 848
Tssr14187 1 151428324 to 151428401 77 - TSS region transcription start site region 14187
Tssr14188 1 151428403 to 151428414 11 - TSS region transcription start site region 14188
Tssr14189 1 151428440 to 151428474 34 - TSS region transcription start site region 14189
Trmt1l 1 151428542 to 151458161 29619 + protein coding gene tRNA methyltransferase 1 like
Tssr9386 1 151428612 to 151428718 106 + TSS region transcription start site region 9386
Tssr9387 1 151428725 to 151428736 11 + TSS region transcription start site region 9387
Mir7682 1 151442393 to 151442450 57 + miRNA gene microRNA 7682
Gm37893 1 151445305 to 151447741 2436 + unclassified gene predicted gene, 37893
Tssr9388 1 151454197 to 151454201 4 + TSS region transcription start site region 9388
Rnf2 1 151469406 to 151500922 31516 - protein coding gene ring finger protein 2
Tssr14190 1 151472099 to 151472110 11 - TSS region transcription start site region 14190
Tssr14191 1 151475699 to 151475730 31 - TSS region transcription start site region 14191
Gm36527 1 151496557 to 151499585 3028 - protein coding gene predicted gene, 36527
Tssr14192 1 151497695 to 151497697 2 - TSS region transcription start site region 14192
Tssr9389 1 151499908 to 151499925 17 + TSS region transcription start site region 9389
Tssr9390 1 151500002 to 151500013 11 + TSS region transcription start site region 9390
Cpgi849 1 151500024 to 151501312 1288 CpG island CpG island 849
Tssr14193 1 151500766 to 151500777 11 - TSS region transcription start site region 14193
Tssr14194 1 151500794 to 151500841 47 - TSS region transcription start site region 14194
Tssr14195 1 151500864 to 151500875 11 - TSS region transcription start site region 14195
Tssr14196 1 151500953 to 151500960 7 - TSS region transcription start site region 14196
Tssr14197 1 151500987 to 151500994 7 - TSS region transcription start site region 14197
Gm29072 1 151509224 to 151510092 868 + pseudogene predicted gene 29072
Tssr14198 1 151517974 to 151517982 8 - TSS region transcription start site region 14198
Gm19503 1 151520447 to 151520687 240 - pseudogene predicted gene, 19503
Tssr14199 1 151520775 to 151520776 1 - TSS region transcription start site region 14199
Tssr9391 1 151530738 to 151530757 19 + TSS region transcription start site region 9391
Gm28181 1 151549245 to 151550943 1698 - lincRNA gene predicted gene 28181
Cpgi850 1 151560627 to 151560796 169 CpG island CpG island 850
Tssr9392 1 151571133 to 151571185 52 + TSS region transcription start site region 9392
Cpgi851 1 151571153 to 151571851 698 CpG island CpG island 851
Fam129a 1 151571373 to 151721939 150566 + protein coding gene family with sequence similarity 129, member A
Tssr9393 1 151571429 to 151571440 11 + TSS region transcription start site region 9393
Tssr9394 1 151571441 to 151571471 30 + TSS region transcription start site region 9394
Tssr9395 1 151571481 to 151571492 11 + TSS region transcription start site region 9395
Tssr9396 1 151572241 to 151572245 4 + TSS region transcription start site region 9396
Tssr9397 1 151603573 to 151603577 4 + TSS region transcription start site region 9397
Tssr9398 1 151632350 to 151632353 3 + TSS region transcription start site region 9398
Tssr9399 1 151677172 to 151677182 10 + TSS region transcription start site region 9399
Tssr9400 1 151678000 to 151678008 8 + TSS region transcription start site region 9400
D1Mit447 1 151690384 to 151690676 292 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 447
Tssr9401 1 151718596 to 151718646 50 + TSS region transcription start site region 9401
Gm41969 1 151736847 to 151742766 5919 + lncRNA gene predicted gene, 41969
2810414N06Rik 1 151748949 to 151755018 6069 - lincRNA gene RIKEN cDNA 2810414N06 gene
Cpgi852 1 151754938 to 151756078 1140 CpG island CpG island 852
Tssr14200 1 151754990 to 151755031 41 - TSS region transcription start site region 14200
Tssr9402 1 151755339 to 151755393 54 + TSS region transcription start site region 9402
Edem3 1 151755371 to 151822051 66680 + protein coding gene ER degradation enhancer, mannosidase alpha-like 3
Tssr9403 1 151755409 to 151755441 32 + TSS region transcription start site region 9403
Tssr9404 1 151755452 to 151755463 11 + TSS region transcription start site region 9404
Gm25279 1 151854823 to 151854955 132 - snRNA gene predicted gene, 25279
Tssr9405 1 151872092 to 151872094 2 + TSS region transcription start site region 9405
Gm28610 1 151875419 to 151887063 11644 + antisense lncRNA gene predicted gene 28610
1700025G04Rik 1 151884524 to 152090320 205796 - protein coding gene RIKEN cDNA 1700025G04 gene
D1Mit513 1 151891826 to 151892010 184 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 513
Tssr14201 1 151920970 to 151920971 1 - TSS region transcription start site region 14201
Tssr14202 1 151945283 to 151945288 5 - TSS region transcription start site region 14202
Tssr14203 1 151947320 to 151947325 5 - TSS region transcription start site region 14203
Tssr9406 1 151947712 to 151947720 8 + TSS region transcription start site region 9406
Tssr14204 1 152042680 to 152042686 6 - TSS region transcription start site region 14204
Tssr14205 1 152053212 to 152053231 19 - TSS region transcription start site region 14205
Tssr14206 1 152055270 to 152055313 43 - TSS region transcription start site region 14206
Cpgi853 1 152089608 to 152091251 1643 CpG island CpG island 853
Tssr14207 1 152090145 to 152090167 22 - TSS region transcription start site region 14207
Tssr14208 1 152090181 to 152090209 28 - TSS region transcription start site region 14208
Tssr14209 1 152090241 to 152090254 13 - TSS region transcription start site region 14209
Tssr14210 1 152090259 to 152090307 48 - TSS region transcription start site region 14210
Tssr14211 1 152090308 to 152090332 24 - TSS region transcription start site region 14211
Gm8964 1 152128585 to 152129389 804 + pseudogene predicted gene 8964
D1Dcr3 1 152142819 to 152142916 97 DNA segment DNA segment, Chr 1, Derry C. Roopenian 3
Gm36920 1 152214308 to 152289992 75684 - lncRNA gene predicted gene, 36920
Tssr9407 1 152229857 to 152229858 1 + TSS region transcription start site region 9407
Cpgi854 1 152275018 to 152275244 226 CpG island CpG island 854
Tssr14212 1 152287996 to 152288013 17 - TSS region transcription start site region 14212
Tssr14213 1 152288035 to 152288046 11 - TSS region transcription start site region 14213
Gm38238 1 152292183 to 152292528 345 - unclassified gene predicted gene, 38238
Gm41970 1 152331171 to 152333925 2754 - lncRNA gene predicted gene, 41970
Tsen15 1 152370735 to 152386682 15947 - protein coding gene tRNA splicing endonuclease subunit 15
Cpgi855 1 152386191 to 152386871 680 CpG island CpG island 855
Tssr14214 1 152386589 to 152386610 21 - TSS region transcription start site region 14214
Tssr14215 1 152386626 to 152386666 40 - TSS region transcription start site region 14215
Tssr14216 1 152386675 to 152386684 9 - TSS region transcription start site region 14216
Tssr14217 1 152386689 to 152386694 5 - TSS region transcription start site region 14217
Tssr9408 1 152399802 to 152399809 7 + TSS region transcription start site region 9408
Cpgi856 1 152399802 to 152400697 895 CpG island CpG island 856
Tssr9409 1 152399824 to 152399881 57 + TSS region transcription start site region 9409
Colgalt2 1 152399830 to 152510695 110865 + protein coding gene collagen beta(1-O)galactosyltransferase 2
Tssr9410 1 152399882 to 152399891 9 + TSS region transcription start site region 9410
Tssr9411 1 152399895 to 152399908 13 + TSS region transcription start site region 9411
Tssr245 1 152400704 to 152400739 35 - TSS region transcription start site region 245
Gm15618 1 152407074 to 152407525 451 - pseudogene predicted gene 15618
Tssr14218 1 152469386 to 152469389 3 - TSS region transcription start site region 14218
Tssr14219 1 152497645 to 152497657 12 - TSS region transcription start site region 14219
Rgl1 1 152516762 to 152766270 249508 - protein coding gene ral guanine nucleotide dissociation stimulator,-like 1
Tssr14220 1 152524828 to 152524844 16 - TSS region transcription start site region 14220
Tssr14221 1 152536450 to 152536485 35 - TSS region transcription start site region 14221
Tssr9412 1 152540858 to 152540905 47 + TSS region transcription start site region 9412
D1Ertd148e 1 152547270 to 152547470 200 DNA segment DNA segment, Chr 1, ERATO Doi 148, expressed
Tssr14222 1 152550602 to 152550616 14 - TSS region transcription start site region 14222
Tssr14223 1 152552594 to 152552598 4 - TSS region transcription start site region 14223
Tssr14224 1 152559743 to 152559748 5 - TSS region transcription start site region 14224
Tssr14225 1 152592762 to 152592779 17 - TSS region transcription start site region 14225
Tssr14226 1 152615161 to 152615167 6 - TSS region transcription start site region 14226
Cpgi857 1 152624566 to 152625640 1074 CpG island CpG island 857
Tssr14227 1 152625076 to 152625085 9 - TSS region transcription start site region 14227
Tssr14228 1 152625124 to 152625138 14 - TSS region transcription start site region 14228
Tssr14229 1 152625153 to 152625174 21 - TSS region transcription start site region 14229
Tssr14230 1 152625212 to 152625220 8 - TSS region transcription start site region 14230
Gm46163 1 152625720 to 152631875 6155 - lncRNA gene predicted gene, 46163
D1Mit501 1 152626381 to 152626502 121 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 501
D1Mit521 1 152674408 to 152674553 145 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-521
Tssr9413 1 152682992 to 152683003 11 + TSS region transcription start site region 9413
Tssr9414 1 152683009 to 152683026 17 + TSS region transcription start site region 9414
Tssr246 1 152683071 to 152683091 20 + TSS region transcription start site region 246
Gm15479 1 152684026 to 152687501 3475 - sense intronic lncRNA gene predicted gene 15479
Gm7278 1 152729162 to 152730559 1397 - pseudogene predicted gene 7278
Cpgi858 1 152730829 to 152730984 155 CpG island CpG island 858
Gm28792 1 152731206 to 152751824 20618 - sense intronic lncRNA gene predicted gene 28792
Tssr9415 1 152750523 to 152750526 3 + TSS region transcription start site region 9415
Tssr9416 1 152750527 to 152750553 26 + TSS region transcription start site region 9416
Apobec4 1 152750551 to 152757544 6993 + protein coding gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
Tssr9417 1 152750554 to 152750564 10 + TSS region transcription start site region 9417
Cpgi859 1 152765903 to 152767272 1369 CpG island CpG island 859
Tssr14231 1 152766281 to 152766319 38 - TSS region transcription start site region 14231
Tssr14232 1 152766323 to 152766352 29 - TSS region transcription start site region 14232
Tssr14233 1 152766356 to 152766367 11 - TSS region transcription start site region 14233
Tssr9418 1 152766540 to 152766551 11 + TSS region transcription start site region 9418
Arpc5 1 152766542 to 152775580 9038 + protein coding gene actin related protein 2/3 complex, subunit 5
Tssr9419 1 152766591 to 152766687 96 + TSS region transcription start site region 9419
Tssr9420 1 152766693 to 152766710 17 + TSS region transcription start site region 9420
Tssr9421 1 152767989 to 152767994 5 + TSS region transcription start site region 9421
Tssr9422 1 152791895 to 152791904 9 + TSS region transcription start site region 9422
Ncf2 1 152800194 to 152836991 36797 + protein coding gene neutrophil cytosolic factor 2
Tssr9423 1 152807772 to 152807790 18 + TSS region transcription start site region 9423
Tssr9424 1 152807819 to 152807826 7 + TSS region transcription start site region 9424
Tssr9425 1 152807827 to 152807876 49 + TSS region transcription start site region 9425
Tssr9426 1 152807877 to 152807898 21 + TSS region transcription start site region 9426
Tssr9427 1 152807905 to 152807916 11 + TSS region transcription start site region 9427
Tssr9428 1 152807918 to 152807934 16 + TSS region transcription start site region 9428
Tssr9429 1 152807948 to 152807959 11 + TSS region transcription start site region 9429
Tssr14234 1 152808310 to 152808313 3 - TSS region transcription start site region 14234
Tssr14235 1 152809924 to 152809929 5 - TSS region transcription start site region 14235
Tssr9430 1 152810107 to 152810120 13 + TSS region transcription start site region 9430
Tssr14236 1 152810609 to 152810617 8 - TSS region transcription start site region 14236
Tssr9431 1 152811416 to 152811441 25 + TSS region transcription start site region 9431
Tssr9432 1 152811611 to 152811631 20 + TSS region transcription start site region 9432
Tssr9433 1 152812473 to 152812492 19 + TSS region transcription start site region 9433
Tssr9434 1 152812505 to 152812517 12 + TSS region transcription start site region 9434
Tssr9435 1 152817441 to 152817445 4 + TSS region transcription start site region 9435
Tssr9436 1 152824753 to 152824758 5 + TSS region transcription start site region 9436
Smg7 1 152836995 to 152902646 65651 - protein coding gene Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
Tssr14237 1 152837501 to 152837518 17 - TSS region transcription start site region 14237
Tssr14238 1 152857409 to 152857421 12 - TSS region transcription start site region 14238
Tssr14239 1 152871186 to 152871230 44 - TSS region transcription start site region 14239
Gm28791 1 152878520 to 152880298 1778 - sense intronic lncRNA gene predicted gene 28791
Tssr14240 1 152880269 to 152880273 4 - TSS region transcription start site region 14240
Tssr14241 1 152882814 to 152882817 3 - TSS region transcription start site region 14241
D1Mit502 1 152901644 to 152901761 117 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 502
Cpgi860 1 152901733 to 152904104 2371 CpG island CpG island 860
Tssr14242 1 152902628 to 152902669 41 - TSS region transcription start site region 14242
Tssr14243 1 152902736 to 152902750 14 - TSS region transcription start site region 14243
Tssr14244 1 152902757 to 152902779 22 - TSS region transcription start site region 14244
Tssr9437 1 152902844 to 152902873 29 + TSS region transcription start site region 9437
Tssr9438 1 152902897 to 152902922 25 + TSS region transcription start site region 9438
Tssr14245 1 152903063 to 152903087 24 - TSS region transcription start site region 14245
Tssr14246 1 152903088 to 152903118 30 - TSS region transcription start site region 14246
Tssr9439 1 152903803 to 152903814 11 + TSS region transcription start site region 9439
Cpgi861 1 152904686 to 152904858 172 CpG island CpG island 861
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
Skts8 1 152919071 to 152919261 190 QTL skin tumor susceptibility 8
D1Mit47 1 152919071 to 152919261 190 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 47
1700040K01Rik 1 152936604 to 152937041 437 + lncRNA gene RIKEN cDNA 1700040K01 gene
Gm8976 1 152949395 to 152950097 702 - pseudogene predicted gene 8976
Cpgi862 1 152954811 to 152956457 1646 CpG island CpG island 862
Tssr9440 1 152954966 to 152955059 93 + TSS region transcription start site region 9440