Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:150450923-151683116

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prg4 1 150449412 to 150466165 16753 - protein coding gene proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
Tssr14151 1 150454391 to 150454428 37 - TSS region transcription start site region 14151
Tssr14152 1 150454555 to 150454588 33 - TSS region transcription start site region 14152
Tssr14153 1 150454591 to 150454609 18 - TSS region transcription start site region 14153
Tssr14154 1 150455959 to 150455970 11 - TSS region transcription start site region 14154
Tssr14155 1 150455977 to 150455985 8 - TSS region transcription start site region 14155
Tssr14156 1 150456228 to 150456252 24 - TSS region transcription start site region 14156
Tssr14157 1 150465563 to 150465604 41 - TSS region transcription start site region 14157
Tssr14158 1 150466160 to 150466170 10 - TSS region transcription start site region 14158
Tssr14159 1 150466191 to 150466236 45 - TSS region transcription start site region 14159
Gm41967 1 150472533 to 150474472 1939 + lncRNA gene predicted gene, 41967
Tssr9365 1 150496867 to 150496893 26 + TSS region transcription start site region 9365
Tssr14160 1 150502687 to 150502714 27 - TSS region transcription start site region 14160
Tssr14161 1 150503148 to 150503153 5 - TSS region transcription start site region 14161
Tssr9366 1 150517818 to 150517825 7 + TSS region transcription start site region 9366
Tssr9367 1 150518737 to 150518742 5 + TSS region transcription start site region 9367
Ska2l-ps 1 150549317 to 150549676 359 + pseudogene spindle and kinetochore associated complex subunit 2-like, pseudogene
Gm33818 1 150556237 to 150558703 2466 - pseudogene predicted gene, 33818
Hmcn1 1 150562524 to 150993435 430911 - protein coding gene hemicentin 1
Gm20631 1 150625266 to 150783499 158233 + antisense lncRNA gene predicted gene 20631
Tssr9368 1 150625290 to 150625301 11 + TSS region transcription start site region 9368
Tssr14162 1 150653880 to 150653886 6 - TSS region transcription start site region 14162
Tssr14163 1 150724744 to 150724750 6 - TSS region transcription start site region 14163
Cfq5 1 150730586 to 159479894 8749308 QTL conditioned fear QTL 5
Tssr244 1 150748616 to 150748618 2 + TSS region transcription start site region 244
D1Dcr2 1 150784655 to 150784766 111 DNA segment DNA segment, Chr 1, Derry C. Roopenian 2
D1Mit346 1 150784679 to 150784828 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 346
Tssr14164 1 150797219 to 150797222 3 - TSS region transcription start site region 14164
Tssr9369 1 150847353 to 150847354 1 + TSS region transcription start site region 9369
D1Mit195 1 150890742 to 150890918 176 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 195
Tssr14165 1 150971256 to 150971268 12 - TSS region transcription start site region 14165
Tssr14166 1 150971331 to 150971336 5 - TSS region transcription start site region 14166
Tssr14167 1 150993140 to 150993155 15 - TSS region transcription start site region 14167
Cpgi846 1 150993196 to 150993793 597 CpG island CpG island 846
Tssr14168 1 150993422 to 150993449 27 - TSS region transcription start site region 14168
Gm29188 1 151001040 to 151004577 3537 + lincRNA gene predicted gene 29188
D1Mit289 1 151007188 to 151007338 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 289
Actre12 1 151007188 to 157361794 6354606 QTL activity response to ethanol 12
Gm36297 1 151055923 to 151078116 22193 + lncRNA gene predicted gene, 36297
Gm22756 1 151062004 to 151062110 106 - snRNA gene predicted gene, 22756
Gm36139 1 151074460 to 151155246 80786 - lncRNA gene predicted gene, 36139
Gm36077 1 151080445 to 151083920 3475 - lncRNA gene predicted gene, 36077
Gm37671 1 151080450 to 151082545 2095 + unclassified gene predicted gene, 37671
Tssr9370 1 151086295 to 151086297 2 + TSS region transcription start site region 9370
Tssr9371 1 151089193 to 151089196 3 + TSS region transcription start site region 9371
Gm19087 1 151107925 to 151108862 937 + pseudogene predicted gene, 19087
Tssr9372 1 151132943 to 151132964 21 + TSS region transcription start site region 9372
Tssr9373 1 151132967 to 151132978 11 + TSS region transcription start site region 9373
Tssr9374 1 151132980 to 151132994 14 + TSS region transcription start site region 9374
Tssr9375 1 151133000 to 151133011 11 + TSS region transcription start site region 9375
Tssr9376 1 151136344 to 151136347 3 + TSS region transcription start site region 9376
Gm8941 1 151136507 to 151137780 1273 + pseudogene predicted gene 8941
C730036E19Rik 1 151138034 to 151142345 4311 + lincRNA gene RIKEN cDNA C730036E19 gene
Tssr14169 1 151155168 to 151155179 11 - TSS region transcription start site region 14169
Gm47985 1 151182537 to 151184243 1706 + protein coding gene predicted gene, 47985
Gm8947 1 151192376 to 151194054 1678 + protein coding gene predicted gene 8947
Gm47995 1 151198448 to 151199350 902 + protein coding gene predicted gene, 47995
3110040M04Rik 1 151204121 to 151205065 944 + protein coding gene RIKEN cDNA 3110040M04 gene
Gm47996 1 151210131 to 151211072 941 + protein coding gene predicted gene, 47996
Gm46162 1 151241601 to 151251348 9747 - lncRNA gene predicted gene, 46162
Tssr14170 1 151250224 to 151250227 3 - TSS region transcription start site region 14170
Tssr14171 1 151250722 to 151250727 5 - TSS region transcription start site region 14171
Tssr14172 1 151250741 to 151250754 13 - TSS region transcription start site region 14172
Tssr14173 1 151250787 to 151250801 14 - TSS region transcription start site region 14173
Tssr14174 1 151250807 to 151250837 30 - TSS region transcription start site region 14174
Tssr14175 1 151250840 to 151250867 27 - TSS region transcription start site region 14175
Tssr14176 1 151252008 to 151252012 4 - TSS region transcription start site region 14176
Tssr14177 1 151252809 to 151252852 43 - TSS region transcription start site region 14177
Gm24402 1 151260824 to 151260914 90 - snRNA gene predicted gene, 24402
Gm10138 1 151339604 to 151345231 5627 - antisense lncRNA gene predicted gene 10138
Cpgi847 1 151343982 to 151345479 1497 CpG island CpG island 847
Tssr9377 1 151344010 to 151344033 23 + TSS region transcription start site region 9377
Tssr14178 1 151344052 to 151344069 17 - TSS region transcription start site region 14178
Tssr14179 1 151344318 to 151344353 35 - TSS region transcription start site region 14179
Tssr14180 1 151344376 to 151344386 10 - TSS region transcription start site region 14180
Tssr14181 1 151344442 to 151344449 7 - TSS region transcription start site region 14181
Tssr9378 1 151344448 to 151344458 10 + TSS region transcription start site region 9378
Tssr9379 1 151344472 to 151344530 58 + TSS region transcription start site region 9379
Ivns1abp 1 151344477 to 151364422 19945 + protein coding gene influenza virus NS1A binding protein
Tssr9380 1 151344531 to 151344584 53 + TSS region transcription start site region 9380
Tssr14182 1 151345062 to 151345089 27 - TSS region transcription start site region 14182
Tssr14183 1 151345093 to 151345111 18 - TSS region transcription start site region 14183
Tssr14184 1 151345208 to 151345222 14 - TSS region transcription start site region 14184
Tssr14185 1 151345224 to 151345278 54 - TSS region transcription start site region 14185
Tssr14186 1 151345304 to 151345323 19 - TSS region transcription start site region 14186
Tssr9381 1 151345501 to 151345512 11 + TSS region transcription start site region 9381
Tssr9382 1 151354985 to 151354991 6 + TSS region transcription start site region 9382
Tssr9383 1 151358070 to 151358073 3 + TSS region transcription start site region 9383
Tssr9384 1 151360013 to 151360023 10 + TSS region transcription start site region 9384
Tssr9385 1 151363060 to 151363064 4 + TSS region transcription start site region 9385
Swt1 1 151367698 to 151428450 60752 - protein coding gene SWT1 RNA endoribonuclease homolog (S. cerevisiae)
Cpgi848 1 151427949 to 151429164 1215 CpG island CpG island 848
Tssr14187 1 151428324 to 151428401 77 - TSS region transcription start site region 14187
Tssr14188 1 151428403 to 151428414 11 - TSS region transcription start site region 14188
Tssr14189 1 151428440 to 151428474 34 - TSS region transcription start site region 14189
Trmt1l 1 151428542 to 151458161 29619 + protein coding gene tRNA methyltransferase 1 like
Tssr9386 1 151428612 to 151428718 106 + TSS region transcription start site region 9386
Tssr9387 1 151428725 to 151428736 11 + TSS region transcription start site region 9387
Mir7682 1 151442393 to 151442450 57 + miRNA gene microRNA 7682
Gm37893 1 151445305 to 151447741 2436 + unclassified gene predicted gene, 37893
Tssr9388 1 151454197 to 151454201 4 + TSS region transcription start site region 9388
Rnf2 1 151469406 to 151500922 31516 - protein coding gene ring finger protein 2
Tssr14190 1 151472099 to 151472110 11 - TSS region transcription start site region 14190
Tssr14191 1 151475699 to 151475730 31 - TSS region transcription start site region 14191
Gm36527 1 151496557 to 151499585 3028 - protein coding gene predicted gene, 36527
Tssr14192 1 151497695 to 151497697 2 - TSS region transcription start site region 14192
Tssr9389 1 151499908 to 151499925 17 + TSS region transcription start site region 9389
Tssr9390 1 151500002 to 151500013 11 + TSS region transcription start site region 9390
Cpgi849 1 151500024 to 151501312 1288 CpG island CpG island 849
Tssr14193 1 151500766 to 151500777 11 - TSS region transcription start site region 14193
Tssr14194 1 151500794 to 151500841 47 - TSS region transcription start site region 14194
Tssr14195 1 151500864 to 151500875 11 - TSS region transcription start site region 14195
Tssr14196 1 151500953 to 151500960 7 - TSS region transcription start site region 14196
Tssr14197 1 151500987 to 151500994 7 - TSS region transcription start site region 14197
Gm29072 1 151509224 to 151510092 868 + pseudogene predicted gene 29072
Tssr14198 1 151517974 to 151517982 8 - TSS region transcription start site region 14198
Gm19503 1 151520447 to 151520687 240 - pseudogene predicted gene, 19503
Tssr14199 1 151520775 to 151520776 1 - TSS region transcription start site region 14199
Tssr9391 1 151530738 to 151530757 19 + TSS region transcription start site region 9391
Gm28181 1 151549245 to 151550943 1698 - lincRNA gene predicted gene 28181
Cpgi850 1 151560627 to 151560796 169 CpG island CpG island 850
Tssr9392 1 151571133 to 151571185 52 + TSS region transcription start site region 9392
Cpgi851 1 151571153 to 151571851 698 CpG island CpG island 851
Fam129a 1 151571373 to 151721939 150566 + protein coding gene family with sequence similarity 129, member A
Tssr9393 1 151571429 to 151571440 11 + TSS region transcription start site region 9393
Tssr9394 1 151571441 to 151571471 30 + TSS region transcription start site region 9394
Tssr9395 1 151571481 to 151571492 11 + TSS region transcription start site region 9395
Tssr9396 1 151572241 to 151572245 4 + TSS region transcription start site region 9396
Tssr9397 1 151603573 to 151603577 4 + TSS region transcription start site region 9397
Tssr9398 1 151632350 to 151632353 3 + TSS region transcription start site region 9398
Tssr9399 1 151677172 to 151677182 10 + TSS region transcription start site region 9399
Tssr9400 1 151678000 to 151678008 8 + TSS region transcription start site region 9400