Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:14635639-16975675

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm9947 1 14752937 to 14776931 23994 + antisense lncRNA gene predicted gene 9947
Msc 1 14753346 to 14755992 2646 - protein coding gene musculin
Cpgi47 1 14755015 to 14756249 1234 CpG island CpG island 47
Tssr11028 1 14755951 to 14755962 11 - TSS region transcription start site region 11028
Tssr11029 1 14755984 to 14755998 14 - TSS region transcription start site region 11029
Gm37412 1 14788645 to 14792965 4320 + unclassified gene predicted gene, 37412
Smt3h2-ps4 1 14839869 to 14840156 287 - pseudogene SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae)
Tssr5975 1 14864998 to 14865008 10 + TSS region transcription start site region 5975
Rpl5-ps1 1 14865072 to 14865965 893 + pseudogene ribosomal protein L5, pseudogene 1
Tssr5976 1 14869730 to 14869733 3 + TSS region transcription start site region 5976
Gm33500 1 14869758 to 14870038 280 + pseudogene predicted gene, 33500
Trpa1 1 14872648 to 14918862 46214 - protein coding gene transient receptor potential cation channel, subfamily A, member 1
Cpgi48 1 14918589 to 14918922 333 CpG island CpG island 48
Tssr11030 1 14931246 to 14931252 6 - TSS region transcription start site region 11030
Gm26345 1 15019040 to 15019159 119 - snoRNA gene predicted gene, 26345
Tssr5977 1 15067003 to 15067042 39 + TSS region transcription start site region 5977
Gm5048 1 15067032 to 15067558 526 + pseudogene predicted gene 5048
D1Mit297 1 15130066 to 15130262 196 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 297
Tssr5978 1 15201847 to 15201850 3 + TSS region transcription start site region 5978
Gm19917 1 15201959 to 15205406 3447 + pseudogene predicted gene, 19917
Gm10566 1 15268802 to 15269797 995 - pseudogene predicted gene 10566
Cpgi49 1 15286290 to 15287566 1276 CpG island CpG island 49
Tssr5979 1 15286900 to 15286963 63 + TSS region transcription start site region 5979
Tssr5980 1 15287002 to 15287017 15 + TSS region transcription start site region 5980
Kcnb2 1 15287254 to 15723750 436496 + protein coding gene potassium voltage gated channel, Shab-related subfamily, member 2
Gm38116 1 15364302 to 15365834 1532 + unclassified gene predicted gene, 38116
D1Mit1003 1 15369347 to 15369497 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1003
Tssr5981 1 15491437 to 15491439 2 + TSS region transcription start site region 5981
Tssr5982 1 15545476 to 15545480 4 + TSS region transcription start site region 5982
Gm37138 1 15556249 to 15558337 2088 + unclassified gene predicted gene, 37138
9430087D07Rik 1 15570582 to 15571241 659 unclassified gene RIKEN cDNA 9430087D07 gene
Cpgi50 1 15651115 to 15651377 262 CpG island CpG island 50
Gm25227 1 15685935 to 15686046 111 - snoRNA gene predicted gene, 25227
Gm25168 1 15757832 to 15757963 131 + snoRNA gene predicted gene, 25168
Gm6060 1 15760122 to 15760668 546 - pseudogene predicted gene 6060
Gm28669 1 15760761 to 15760860 99 + pseudogene predicted gene 28669
Tssr5983 1 15803204 to 15803236 32 + TSS region transcription start site region 5983
Tssr5984 1 15803238 to 15803249 11 + TSS region transcription start site region 5984
Tssr5985 1 15803254 to 15803264 10 + TSS region transcription start site region 5985
Tssr5986 1 15804357 to 15804367 10 + TSS region transcription start site region 5986
Tssr5987 1 15804368 to 15804373 5 + TSS region transcription start site region 5987
Tssr5988 1 15804374 to 15804382 8 + TSS region transcription start site region 5988
Cpgi51 1 15805476 to 15806371 895 CpG island CpG island 51
Tssr5989 1 15805623 to 15805632 9 + TSS region transcription start site region 5989
Tssr5990 1 15805639 to 15805675 36 + TSS region transcription start site region 5990
Terf1 1 15805646 to 15844052 38406 + protein coding gene telomeric repeat binding factor 1
D1Ertd705e 1 15849417 to 15849631 214 DNA segment DNA segment, Chr 1, ERATO Doi 705, expressed
Gm37509 1 15853331 to 15856499 3168 + unclassified gene predicted gene, 37509
Sbspon 1 15853862 to 15892722 38860 - protein coding gene somatomedin B and thrombospondin, type 1 domain containing
Gm23259 1 15879530 to 15879832 302 + unclassified non-coding RNA gene predicted gene, 23259
Cpgi52 1 15892304 to 15893041 737 CpG island CpG island 52
Tssr11031 1 15892657 to 15892729 72 - TSS region transcription start site region 11031
Gm31523 1 15905205 to 15907764 2559 + lncRNA gene predicted gene, 31523
Tssr5991 1 16051552 to 16051554 2 + TSS region transcription start site region 5991
Tssr5992 1 16053299 to 16053300 1 + TSS region transcription start site region 5992
Gm7634 1 16053335 to 16053887 552 + pseudogene predicted gene 7634
4930444P10Rik 1 16065979 to 16093325 27346 - protein coding gene RIKEN cDNA 4930444P10 gene
D1Mit1002 1 16077429 to 16077576 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1002
Cpgi53 1 16092809 to 16093494 685 CpG island CpG island 53
Tssr11032 1 16093286 to 16093341 55 - TSS region transcription start site region 11032
Rpl7 1 16101295 to 16104433 3138 - protein coding gene ribosomal protein L7
Cpgi54 1 16104101 to 16106523 2422 CpG island CpG island 54
Tssr11033 1 16104163 to 16104204 41 - TSS region transcription start site region 11033
Tssr11034 1 16104385 to 16104392 7 - TSS region transcription start site region 11034
Tssr11035 1 16104396 to 16104435 39 - TSS region transcription start site region 11035
Tssr5993 1 16105330 to 16105359 29 + TSS region transcription start site region 5993
Tssr5994 1 16105370 to 16105379 9 + TSS region transcription start site region 5994
Tssr5995 1 16105394 to 16105410 16 + TSS region transcription start site region 5995
Tssr5996 1 16105856 to 16105870 14 + TSS region transcription start site region 5996
Rdh10 1 16105882 to 16132550 26668 + protein coding gene retinol dehydrogenase 10 (all-trans)
Tssr5997 1 16106364 to 16106377 13 + TSS region transcription start site region 5997
Tssr5998 1 16111349 to 16111370 21 + TSS region transcription start site region 5998
D1Mit119 1 16176457 to 16176602 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 119
Gm38249 1 16208197 to 16210517 2320 - unclassified gene predicted gene, 38249
Gm28095 1 16228506 to 16244062 15556 + antisense lncRNA gene predicted gene 28095
Stau2 1 16228803 to 16520182 291379 - protein coding gene staufen double-stranded RNA binding protein 2
Tssr5999 1 16253582 to 16253597 15 + TSS region transcription start site region 5999
Gm7568 1 16253587 to 16263525 9938 + antisense lncRNA gene predicted gene 7568
Tssr11036 1 16294892 to 16294897 5 - TSS region transcription start site region 11036
C130013N14Rik 1 16309437 to 16311722 2285 unclassified gene RIKEN cDNA C130013N14 gene
Tssr11037 1 16345473 to 16345487 14 - TSS region transcription start site region 11037
Cpgi55 1 16518533 to 16520192 1659 CpG island CpG island 55
Tssr11038 1 16519201 to 16519260 59 - TSS region transcription start site region 11038
Tssr11039 1 16519284 to 16519336 52 - TSS region transcription start site region 11039
Tssr11040 1 16520023 to 16520039 16 - TSS region transcription start site region 11040
Tssr11041 1 16520067 to 16520095 28 - TSS region transcription start site region 11041
Tssr11042 1 16520106 to 16520133 27 - TSS region transcription start site region 11042
Ube2w 1 16540788 to 16619415 78627 - protein coding gene ubiquitin-conjugating enzyme E2W (putative)
Tssr11043 1 16579121 to 16579132 11 - TSS region transcription start site region 11043
Gm46084 1 16591021 to 16596309 5288 - protein coding gene predicted gene, 46084
2310047N11Rik 1 16604593 to 16604935 342 unclassified gene RIKEN cDNA 2310047N11 gene
Tssr11044 1 16615502 to 16615506 4 - TSS region transcription start site region 11044
Cpgi56 1 16618471 to 16619580 1109 CpG island CpG island 56
Gm38342 1 16618560 to 16621539 2979 + unclassified gene predicted gene, 38342
Tssr6000 1 16618773 to 16618785 12 + TSS region transcription start site region 6000
Tssr11045 1 16619245 to 16619302 57 - TSS region transcription start site region 11045
Tssr11046 1 16619303 to 16619314 11 - TSS region transcription start site region 11046
Tssr11047 1 16619437 to 16619446 9 - TSS region transcription start site region 11047
Tssr6001 1 16619468 to 16619498 30 + TSS region transcription start site region 6001
Eloc 1 16641725 to 16657042 15317 - protein coding gene elongin C
Tssr11048 1 16645801 to 16645828 27 - TSS region transcription start site region 11048
Tssr11049 1 16655489 to 16655528 39 - TSS region transcription start site region 11049
Cpgi57 1 16656447 to 16657229 782 CpG island CpG island 57
Tssr11050 1 16656843 to 16656897 54 - TSS region transcription start site region 11050
Tssr11051 1 16656908 to 16656922 14 - TSS region transcription start site region 11051
Tssr6002 1 16656979 to 16656984 5 + TSS region transcription start site region 6002
Tssr11052 1 16657033 to 16657049 16 - TSS region transcription start site region 11052
D030040B21Rik 1 16657552 to 16662278 4726 + lincRNA gene RIKEN cDNA D030040B21 gene
Tssr6003 1 16661532 to 16661545 13 + TSS region transcription start site region 6003
Tssr6004 1 16661568 to 16661574 6 + TSS region transcription start site region 6004
Tssr13 1 16661608 to 16661615 7 + TSS region transcription start site region 13
Gm7654 1 16662980 to 16663662 682 - pseudogene predicted gene 7654
Cpgi58 1 16664996 to 16665690 694 CpG island CpG island 58
Tssr6005 1 16665180 to 16665185 5 + TSS region transcription start site region 6005
Tssr6006 1 16665189 to 16665264 75 + TSS region transcription start site region 6006
Tmem70 1 16665207 to 16678275 13068 + protein coding gene transmembrane protein 70
Tssr14 1 16665274 to 16665279 5 + TSS region transcription start site region 14
Tssr6007 1 16688032 to 16688073 41 + TSS region transcription start site region 6007
Tssr11053 1 16688143 to 16688156 13 - TSS region transcription start site region 11053
Tssr6008 1 16688405 to 16688458 53 + TSS region transcription start site region 6008
Ly96 1 16688456 to 16709605 21149 + protein coding gene lymphocyte antigen 96
Tssr6009 1 16688459 to 16688471 12 + TSS region transcription start site region 6009
Tssr6010 1 16688507 to 16688518 11 + TSS region transcription start site region 6010
Tssr11054 1 16688937 to 16688963 26 - TSS region transcription start site region 11054
Tssr6011 1 16691731 to 16691748 17 + TSS region transcription start site region 6011
Tssr6012 1 16709469 to 16709481 12 + TSS region transcription start site region 6012
D1Mit168 1 16746927 to 16747061 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 168
Gm29649 1 16758205 to 16758623 418 - pseudogene predicted gene 29649
Gm5828 1 16768279 to 16770138 1859 - pseudogene predicted gene 5828
Tssr11055 1 16770149 to 16770159 10 - TSS region transcription start site region 11055
Tssr6013 1 16814249 to 16814256 7 + TSS region transcription start site region 6013
Tssr6014 1 16814297 to 16814304 7 + TSS region transcription start site region 6014
Gm28376 1 16898185 to 17091631 193446 + antisense lncRNA gene predicted gene 28376
4921511E07Rik 1 16930970 to 16931796 826 + unclassified gene RIKEN cDNA 4921511E07 gene
Jph1 1 16964560 to 17097889 133329 - protein coding gene junctophilin 1