Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:14264758-15475038

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eya1 1 14168954 to 14310235 141281 - protein coding gene EYA transcriptional coactivator and phosphatase 1
D1Mit430 1 14281275 to 14281387 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 430
Tssr11015 1 14299706 to 14299714 8 - TSS region transcription start site region 11015
Tssr11016 1 14304542 to 14304550 8 - TSS region transcription start site region 11016
Tssr11017 1 14304594 to 14304609 15 - TSS region transcription start site region 11017
Tssr11018 1 14304616 to 14304683 67 - TSS region transcription start site region 11018
Tssr11019 1 14304701 to 14304716 15 - TSS region transcription start site region 11019
Cpgi45 1 14309667 to 14310160 493 CpG island CpG island 45
Tssr11020 1 14309811 to 14309814 3 - TSS region transcription start site region 11020
Tssr11021 1 14309861 to 14309879 18 - TSS region transcription start site region 11021
Tssr11022 1 14309938 to 14309947 9 - TSS region transcription start site region 11022
Tssr11023 1 14309984 to 14310006 22 - TSS region transcription start site region 11023
Tssr11024 1 14310042 to 14310074 32 - TSS region transcription start site region 11024
Tssr11025 1 14310109 to 14310124 15 - TSS region transcription start site region 11025
Tssr11026 1 14310198 to 14310218 20 - TSS region transcription start site region 11026
Tssr11027 1 14310219 to 14310242 23 - TSS region transcription start site region 11027
Cpgi46 1 14506401 to 14507250 849 CpG island CpG island 46
Gm7617 1 14550433 to 14551087 654 + pseudogene predicted gene 7617
Gm9947 1 14752937 to 14776931 23994 + antisense lncRNA gene predicted gene 9947
Msc 1 14753346 to 14755992 2646 - protein coding gene musculin
Cpgi47 1 14755015 to 14756249 1234 CpG island CpG island 47
Tssr11028 1 14755951 to 14755962 11 - TSS region transcription start site region 11028
Tssr11029 1 14755984 to 14755998 14 - TSS region transcription start site region 11029
Gm37412 1 14788645 to 14792965 4320 + unclassified gene predicted gene, 37412
Smt3h2-ps4 1 14839869 to 14840156 287 - pseudogene SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae)
Tssr5975 1 14864998 to 14865008 10 + TSS region transcription start site region 5975
Rpl5-ps1 1 14865072 to 14865965 893 + pseudogene ribosomal protein L5, pseudogene 1
Tssr5976 1 14869730 to 14869733 3 + TSS region transcription start site region 5976
Gm33500 1 14869758 to 14870038 280 + pseudogene predicted gene, 33500
Trpa1 1 14872648 to 14918862 46214 - protein coding gene transient receptor potential cation channel, subfamily A, member 1
Cpgi48 1 14918589 to 14918922 333 CpG island CpG island 48
Tssr11030 1 14931246 to 14931252 6 - TSS region transcription start site region 11030
Gm26345 1 15019040 to 15019159 119 - snoRNA gene predicted gene, 26345
Tssr5977 1 15067003 to 15067042 39 + TSS region transcription start site region 5977
Gm5048 1 15067032 to 15067558 526 + pseudogene predicted gene 5048
D1Mit297 1 15130066 to 15130262 196 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 297
Tssr5978 1 15201847 to 15201850 3 + TSS region transcription start site region 5978
Gm19917 1 15201959 to 15205406 3447 + pseudogene predicted gene, 19917
Gm10566 1 15268802 to 15269797 995 - pseudogene predicted gene 10566
Cpgi49 1 15286290 to 15287566 1276 CpG island CpG island 49
Tssr5979 1 15286900 to 15286963 63 + TSS region transcription start site region 5979
Tssr5980 1 15287002 to 15287017 15 + TSS region transcription start site region 5980
Kcnb2 1 15287254 to 15723750 436496 + protein coding gene potassium voltage gated channel, Shab-related subfamily, member 2
Gm38116 1 15364302 to 15365834 1532 + unclassified gene predicted gene, 38116
D1Mit1003 1 15369347 to 15369497 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1003