Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:139314748-140584862

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crb1 1 139197056 to 139377100 180044 - protein coding gene crumbs family member 1, photoreceptor morphogenesis associated
Tssr14059 1 139376969 to 139376983 14 - TSS region transcription start site region 14059
Tssr14060 1 139377019 to 139377034 15 - TSS region transcription start site region 14060
Tssr14061 1 139377047 to 139377078 31 - TSS region transcription start site region 14061
Tssr14062 1 139377094 to 139377110 16 - TSS region transcription start site region 14062
4933436E23Rik 1 139379452 to 139402852 23400 + lincRNA gene RIKEN cDNA 4933436E23 gene
Gm34816 1 139408280 to 139413864 5584 + lincRNA gene predicted gene, 34816
D1Mit422 1 139410632 to 139410748 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 422
Cpgi832 1 139421686 to 139422856 1170 CpG island CpG island 832
Tssr9172 1 139422196 to 139422263 67 + TSS region transcription start site region 9172
Zbtb41 1 139422288 to 139453005 30717 + protein coding gene zinc finger and BTB domain containing 41
Gm41962 1 139424883 to 139435956 11073 - lncRNA gene predicted gene, 41962
Tssr14063 1 139436889 to 139436909 20 - TSS region transcription start site region 14063
Cpgi833 1 139454535 to 139455561 1026 CpG island CpG island 833
Tssr9173 1 139454747 to 139454825 78 + TSS region transcription start site region 9173
Aspm 1 139454772 to 139494091 39319 + protein coding gene abnormal spindle microtubule assembly
Tssr9174 1 139454828 to 139454842 14 + TSS region transcription start site region 9174
Tssr9175 1 139454845 to 139454869 24 + TSS region transcription start site region 9175
Tssr235 1 139483522 to 139483527 5 + TSS region transcription start site region 235
Tssr9176 1 139491491 to 139491527 36 + TSS region transcription start site region 9176
Tssr14064 1 139494684 to 139494696 12 - TSS region transcription start site region 14064
Tssr9177 1 139501679 to 139501690 11 + TSS region transcription start site region 9177
Tssr9178 1 139501692 to 139501726 34 + TSS region transcription start site region 9178
F13b 1 139501702 to 139523752 22050 + protein coding gene coagulation factor XIII, beta subunit
Tssr9179 1 139501734 to 139501746 12 + TSS region transcription start site region 9179
Cfhr1 1 139547064 to 139560222 13158 - protein coding gene complement factor H-related 1
Tssr14065 1 139560213 to 139560229 16 - TSS region transcription start site region 14065
Cfhr3 1 139584783 to 139660899 76116 - pseudogene complement factor H-related 3
Tssr14066 1 139631950 to 139631960 10 - TSS region transcription start site region 14066
Tssr14067 1 139660918 to 139660945 27 - TSS region transcription start site region 14067
Tssr236 1 139660972 to 139661006 34 - TSS region transcription start site region 236
Gm26271 1 139671604 to 139671707 103 + snRNA gene predicted gene, 26271
Gm4788 1 139697919 to 139781239 83320 - protein coding gene predicted gene 4788
Tssr14068 1 139699161 to 139699163 2 - TSS region transcription start site region 14068
Tssr14069 1 139781254 to 139781282 28 - TSS region transcription start site region 14069
Gm25619 1 139786983 to 139787086 103 + snRNA gene predicted gene, 25619
Gm41963 1 139804165 to 139806699 2534 - lncRNA gene predicted gene, 41963
Cfhr2 1 139810292 to 139858699 48407 - protein coding gene complement factor H-related 2
Tssr14070 1 139858684 to 139858729 45 - TSS region transcription start site region 14070
Gm16332 1 139878094 to 139936455 58361 - pseudogene predicted gene 16332
Tssr14071 1 139923100 to 139923102 2 - TSS region transcription start site region 14071
Gm5837 1 139928240 to 139929608 1368 - pseudogene predicted gene 5837
Gm5834 1 139939601 to 139994205 54604 - pseudogene predicted pseudogene 5834
D1Mit199 1 139949748 to 139949862 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 199
Tssr14072 1 139982134 to 139982135 1 - TSS region transcription start site region 14072
Tssr14073 1 139990668 to 139990672 4 - TSS region transcription start site region 14073
V125Dq3 1 140000000 to 140000000 0 QTL vitamin D active form serum level QTL 3
Gm38266 1 140000549 to 140000969 420 + pseudogene predicted gene, 38266
Gm26048 1 140003825 to 140003966 141 + snoRNA gene predicted gene, 26048
Tssr14074 1 140018868 to 140018882 14 - TSS region transcription start site region 14074
Gm38019 1 140038433 to 140049029 10596 - pseudogene predicted gene, 38019
Cfh 1 140085855 to 140183411 97556 - protein coding gene complement component factor h
Tssr14075 1 140096504 to 140096510 6 - TSS region transcription start site region 14075
Tssr14076 1 140097835 to 140097838 3 - TSS region transcription start site region 14076
Tssr14077 1 140105444 to 140105464 20 - TSS region transcription start site region 14077
Tssr14078 1 140183260 to 140183271 11 - TSS region transcription start site region 14078
Tssr14079 1 140183283 to 140183332 49 - TSS region transcription start site region 14079
Tssr14080 1 140183404 to 140183415 11 - TSS region transcription start site region 14080
Cpgi834 1 140245591 to 140246101 510 CpG island CpG island 834
Tssr9180 1 140245710 to 140245732 22 + TSS region transcription start site region 9180
Tssr237 1 140245915 to 140245922 7 + TSS region transcription start site region 237
Tssr9181 1 140246012 to 140246044 32 + TSS region transcription start site region 9181
Tssr9182 1 140246049 to 140246061 12 + TSS region transcription start site region 9182
Kcnt2 1 140246158 to 140612067 365909 + protein coding gene potassium channel, subfamily T, member 2
D1Mit141 1 140251204 to 140251366 162 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 141
Gm37777 1 140266487 to 140269852 3365 + unclassified gene predicted gene, 37777
Tssr9183 1 140381531 to 140381534 3 + TSS region transcription start site region 9183
4930590L20Rik 1 140570176 to 140656402 86226 - antisense lncRNA gene RIKEN cDNA 4930590L20 gene
Tssr9184 1 140572073 to 140572078 5 + TSS region transcription start site region 9184