Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:138690674-139820683

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhx9 1 138825186 to 138848577 23391 - protein coding gene LIM homeobox protein 9
Cpgi824 1 138831439 to 138831658 219 CpG island CpG island 824
Cpgi825 1 138838331 to 138838671 340 CpG island CpG island 825
Cpgi826 1 138839899 to 138840250 351 CpG island CpG island 826
Cpgi827 1 138841482 to 138842051 569 CpG island CpG island 827
Tssr14047 1 138842437 to 138842455 18 - TSS region transcription start site region 14047
Tssr14048 1 138842465 to 138842477 12 - TSS region transcription start site region 14048
Cpgi828 1 138843492 to 138843946 454 CpG island CpG island 828
Tssr14049 1 138847387 to 138847399 12 - TSS region transcription start site region 14049
Tssr14050 1 138847616 to 138847631 15 - TSS region transcription start site region 14050
Cpgi829 1 138848059 to 138849110 1051 CpG island CpG island 829
Tssr14051 1 138848588 to 138848603 15 - TSS region transcription start site region 14051
2310009B15Rik 1 138851983 to 138856852 4869 - protein coding gene RIKEN cDNA 2310009B15 gene
Cpgi830 1 138856500 to 138856964 464 CpG island CpG island 830
Tssr14052 1 138856819 to 138856848 29 - TSS region transcription start site region 14052
1700019P21Rik 1 138876272 to 138876951 679 - lincRNA gene RIKEN cDNA 1700019P21 gene
Tssr14053 1 138876930 to 138876952 22 - TSS region transcription start site region 14053
n-R5s217 1 138878262 to 138878377 115 - rRNA gene nuclear encoded rRNA 5S 217
Tssr9162 1 138913657 to 138913662 5 + TSS region transcription start site region 9162
Gm3933 1 138915605 to 138916043 438 - pseudogene predicted gene 3933
Tssr9163 1 138960155 to 138960175 20 + TSS region transcription start site region 9163
Tssr9164 1 138960176 to 138960187 11 + TSS region transcription start site region 9164
Gm37045 1 138960441 to 138962903 2462 - unclassified gene predicted gene, 37045
Cpgi831 1 138963059 to 138964308 1249 CpG island CpG island 831
Dennd1b 1 138963220 to 139176043 212823 + protein coding gene DENN/MADD domain containing 1B
Tssr9165 1 138963417 to 138963472 55 + TSS region transcription start site region 9165
Tssr9166 1 138963629 to 138963684 55 + TSS region transcription start site region 9166
Tssr9167 1 138963717 to 138963808 91 + TSS region transcription start site region 9167
Gm37423 1 138968510 to 138971851 3341 + unclassified non-coding RNA gene predicted gene, 37423
Tssr9168 1 138971234 to 138971245 11 + TSS region transcription start site region 9168
4930596I21Rik 1 138977657 to 138979246 1589 + sense intronic lncRNA gene RIKEN cDNA 4930596I21 gene
Gm18553 1 138983872 to 138984480 608 - pseudogene predicted gene, 18553
Gm16305 1 138991514 to 138992069 555 - pseudogene predicted gene 16305
Gm37470 1 139030185 to 139032982 2797 + unclassified gene predicted gene, 37470
Tssr9169 1 139056758 to 139056763 5 + TSS region transcription start site region 9169
Gm43544 1 139070213 to 139072684 2471 + unclassified gene predicted gene 43544
Gm37655 1 139082862 to 139086984 4122 - unclassified gene predicted gene, 37655
Gm16304 1 139133891 to 139134665 774 - pseudogene predicted gene 16304
Gm37718 1 139155152 to 139157782 2630 + unclassified gene predicted gene, 37718
Gm41960 1 139163918 to 139167691 3773 - lncRNA gene predicted gene, 41960
Tssr9170 1 139172060 to 139172072 12 + TSS region transcription start site region 9170
Crb1 1 139197056 to 139377100 180044 - protein coding gene crumbs family member 1, photoreceptor morphogenesis associated
Tssr14054 1 139214802 to 139214805 3 - TSS region transcription start site region 14054
Tssr14055 1 139255674 to 139255683 9 - TSS region transcription start site region 14055
Tssr14056 1 139255711 to 139255728 17 - TSS region transcription start site region 14056
Tssr14057 1 139255755 to 139255765 10 - TSS region transcription start site region 14057
Tssr9171 1 139268285 to 139268289 4 + TSS region transcription start site region 9171
D1Mit394 1 139280373 to 139280497 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 394
Tssr14058 1 139304767 to 139304774 7 - TSS region transcription start site region 14058
Tssr14059 1 139376969 to 139376983 14 - TSS region transcription start site region 14059
Tssr14060 1 139377019 to 139377034 15 - TSS region transcription start site region 14060
Tssr14061 1 139377047 to 139377078 31 - TSS region transcription start site region 14061
Tssr14062 1 139377094 to 139377110 16 - TSS region transcription start site region 14062
4933436E23Rik 1 139379452 to 139402852 23400 + lincRNA gene RIKEN cDNA 4933436E23 gene
Gm34816 1 139408280 to 139413864 5584 + lincRNA gene predicted gene, 34816
D1Mit422 1 139410632 to 139410748 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 422
Cpgi832 1 139421686 to 139422856 1170 CpG island CpG island 832
Tssr9172 1 139422196 to 139422263 67 + TSS region transcription start site region 9172
Zbtb41 1 139422288 to 139453005 30717 + protein coding gene zinc finger and BTB domain containing 41
Gm41962 1 139424883 to 139435956 11073 - lncRNA gene predicted gene, 41962
Tssr14063 1 139436889 to 139436909 20 - TSS region transcription start site region 14063
Cpgi833 1 139454535 to 139455561 1026 CpG island CpG island 833
Tssr9173 1 139454747 to 139454825 78 + TSS region transcription start site region 9173
Aspm 1 139454772 to 139494091 39319 + protein coding gene abnormal spindle microtubule assembly
Tssr9174 1 139454828 to 139454842 14 + TSS region transcription start site region 9174
Tssr9175 1 139454845 to 139454869 24 + TSS region transcription start site region 9175
Tssr235 1 139483522 to 139483527 5 + TSS region transcription start site region 235
Tssr9176 1 139491491 to 139491527 36 + TSS region transcription start site region 9176
Tssr14064 1 139494684 to 139494696 12 - TSS region transcription start site region 14064
Tssr9177 1 139501679 to 139501690 11 + TSS region transcription start site region 9177
Tssr9178 1 139501692 to 139501726 34 + TSS region transcription start site region 9178
F13b 1 139501702 to 139523752 22050 + protein coding gene coagulation factor XIII, beta subunit
Tssr9179 1 139501734 to 139501746 12 + TSS region transcription start site region 9179
Cfhr1 1 139547064 to 139560222 13158 - protein coding gene complement factor H-related 1
Tssr14065 1 139560213 to 139560229 16 - TSS region transcription start site region 14065
Cfhr3 1 139584783 to 139660899 76116 - pseudogene complement factor H-related 3
Tssr14066 1 139631950 to 139631960 10 - TSS region transcription start site region 14066
Tssr14067 1 139660918 to 139660945 27 - TSS region transcription start site region 14067
Tssr236 1 139660972 to 139661006 34 - TSS region transcription start site region 236
Gm26271 1 139671604 to 139671707 103 + snRNA gene predicted gene, 26271
Gm4788 1 139697919 to 139781239 83320 - protein coding gene predicted gene 4788
Tssr14068 1 139699161 to 139699163 2 - TSS region transcription start site region 14068
Tssr14069 1 139781254 to 139781282 28 - TSS region transcription start site region 14069
Gm25619 1 139786983 to 139787086 103 + snRNA gene predicted gene, 25619
Gm41963 1 139804165 to 139806699 2534 - lncRNA gene predicted gene, 41963
Cfhr2 1 139810292 to 139858699 48407 - protein coding gene complement factor H-related 2