Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:138294645-138944654

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr9159 1 138303549 to 138303569 20 + TSS region transcription start site region 9159
Tssr14032 1 138304162 to 138304166 4 - TSS region transcription start site region 14032
Tssr9160 1 138304455 to 138304492 37 + TSS region transcription start site region 9160
Tssr9161 1 138304770 to 138304783 13 + TSS region transcription start site region 9161
Gm28500 1 138377264 to 138377414 150 + pseudogene predicted gene 28500
Nek7 1 138483837 to 138619757 135920 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 7
Tssr14033 1 138484887 to 138484904 17 - TSS region transcription start site region 14033
Tssr14034 1 138485321 to 138485326 5 - TSS region transcription start site region 14034
Tssr14035 1 138494174 to 138494200 26 - TSS region transcription start site region 14035
Gm28501 1 138515615 to 138550009 34394 + antisense lncRNA gene predicted gene 28501
Tssr14036 1 138536201 to 138536205 4 - TSS region transcription start site region 14036
Gm37080 1 138552305 to 138554708 2403 - unclassified gene predicted gene, 37080
Gm37101 1 138567697 to 138571356 3659 - unclassified gene predicted gene, 37101
Tssr14037 1 138582313 to 138582325 12 - TSS region transcription start site region 14037
Tssr14038 1 138582370 to 138582379 9 - TSS region transcription start site region 14038
Tssr14039 1 138598929 to 138598932 3 - TSS region transcription start site region 14039
Tssr14040 1 138606580 to 138606609 29 - TSS region transcription start site region 14040
Tssr14041 1 138614413 to 138614424 11 - TSS region transcription start site region 14041
Cpgi823 1 138619028 to 138619961 933 CpG island CpG island 823
Tssr14042 1 138619199 to 138619207 8 - TSS region transcription start site region 14042
Tssr14043 1 138619645 to 138619654 9 - TSS region transcription start site region 14043
Tssr14044 1 138619665 to 138619683 18 - TSS region transcription start site region 14044
Tssr14045 1 138619687 to 138619759 72 - TSS region transcription start site region 14045
Tssr14046 1 138620214 to 138620227 13 - TSS region transcription start site region 14046
Gm5833 1 138640095 to 138682075 41980 - lincRNA gene predicted gene 5833
Gm8790 1 138689524 to 138689845 321 - pseudogene predicted gene 8790
Lhx9 1 138825186 to 138848577 23391 - protein coding gene LIM homeobox protein 9
Cpgi824 1 138831439 to 138831658 219 CpG island CpG island 824
Cpgi825 1 138838331 to 138838671 340 CpG island CpG island 825
Cpgi826 1 138839899 to 138840250 351 CpG island CpG island 826
Cpgi827 1 138841482 to 138842051 569 CpG island CpG island 827
Tssr14047 1 138842437 to 138842455 18 - TSS region transcription start site region 14047
Tssr14048 1 138842465 to 138842477 12 - TSS region transcription start site region 14048
Cpgi828 1 138843492 to 138843946 454 CpG island CpG island 828
Tssr14049 1 138847387 to 138847399 12 - TSS region transcription start site region 14049
Tssr14050 1 138847616 to 138847631 15 - TSS region transcription start site region 14050
Cpgi829 1 138848059 to 138849110 1051 CpG island CpG island 829
Tssr14051 1 138848588 to 138848603 15 - TSS region transcription start site region 14051
2310009B15Rik 1 138851983 to 138856852 4869 - protein coding gene RIKEN cDNA 2310009B15 gene
Cpgi830 1 138856500 to 138856964 464 CpG island CpG island 830
Tssr14052 1 138856819 to 138856848 29 - TSS region transcription start site region 14052
1700019P21Rik 1 138876272 to 138876951 679 - lincRNA gene RIKEN cDNA 1700019P21 gene
Tssr14053 1 138876930 to 138876952 22 - TSS region transcription start site region 14053
n-R5s217 1 138878262 to 138878377 115 - rRNA gene nuclear encoded rRNA 5S 217
Tssr9162 1 138913657 to 138913662 5 + TSS region transcription start site region 9162
Gm3933 1 138915605 to 138916043 438 - pseudogene predicted gene 3933