Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:138291500-139421964

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr9159 1 138303549 to 138303569 20 + TSS region transcription start site region 9159
Tssr14032 1 138304162 to 138304166 4 - TSS region transcription start site region 14032
Tssr9160 1 138304455 to 138304492 37 + TSS region transcription start site region 9160
Tssr9161 1 138304770 to 138304783 13 + TSS region transcription start site region 9161
Gm28500 1 138377264 to 138377414 150 + pseudogene predicted gene 28500
Nek7 1 138483837 to 138619757 135920 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 7
Tssr14033 1 138484887 to 138484904 17 - TSS region transcription start site region 14033
Tssr14034 1 138485321 to 138485326 5 - TSS region transcription start site region 14034
Tssr14035 1 138494174 to 138494200 26 - TSS region transcription start site region 14035
Gm28501 1 138515615 to 138550009 34394 + antisense lncRNA gene predicted gene 28501
Tssr14036 1 138536201 to 138536205 4 - TSS region transcription start site region 14036
Gm37080 1 138552305 to 138554708 2403 - unclassified gene predicted gene, 37080
Gm37101 1 138567697 to 138571356 3659 - unclassified gene predicted gene, 37101
Tssr14037 1 138582313 to 138582325 12 - TSS region transcription start site region 14037
Tssr14038 1 138582370 to 138582379 9 - TSS region transcription start site region 14038
Tssr14039 1 138598929 to 138598932 3 - TSS region transcription start site region 14039
Tssr14040 1 138606580 to 138606609 29 - TSS region transcription start site region 14040
Tssr14041 1 138614413 to 138614424 11 - TSS region transcription start site region 14041
Cpgi823 1 138619028 to 138619961 933 CpG island CpG island 823
Tssr14042 1 138619199 to 138619207 8 - TSS region transcription start site region 14042
Tssr14043 1 138619645 to 138619654 9 - TSS region transcription start site region 14043
Tssr14044 1 138619665 to 138619683 18 - TSS region transcription start site region 14044
Tssr14045 1 138619687 to 138619759 72 - TSS region transcription start site region 14045
Tssr14046 1 138620214 to 138620227 13 - TSS region transcription start site region 14046
Gm5833 1 138640095 to 138682075 41980 - lincRNA gene predicted gene 5833
Gm8790 1 138689524 to 138689845 321 - pseudogene predicted gene 8790
Lhx9 1 138825186 to 138848577 23391 - protein coding gene LIM homeobox protein 9
Cpgi824 1 138831439 to 138831658 219 CpG island CpG island 824
Cpgi825 1 138838331 to 138838671 340 CpG island CpG island 825
Cpgi826 1 138839899 to 138840250 351 CpG island CpG island 826
Cpgi827 1 138841482 to 138842051 569 CpG island CpG island 827
Tssr14047 1 138842437 to 138842455 18 - TSS region transcription start site region 14047
Tssr14048 1 138842465 to 138842477 12 - TSS region transcription start site region 14048
Cpgi828 1 138843492 to 138843946 454 CpG island CpG island 828
Tssr14049 1 138847387 to 138847399 12 - TSS region transcription start site region 14049
Tssr14050 1 138847616 to 138847631 15 - TSS region transcription start site region 14050
Cpgi829 1 138848059 to 138849110 1051 CpG island CpG island 829
Tssr14051 1 138848588 to 138848603 15 - TSS region transcription start site region 14051
2310009B15Rik 1 138851983 to 138856852 4869 - protein coding gene RIKEN cDNA 2310009B15 gene
Cpgi830 1 138856500 to 138856964 464 CpG island CpG island 830
Tssr14052 1 138856819 to 138856848 29 - TSS region transcription start site region 14052
1700019P21Rik 1 138876272 to 138876951 679 - lincRNA gene RIKEN cDNA 1700019P21 gene
Tssr14053 1 138876930 to 138876952 22 - TSS region transcription start site region 14053
n-R5s217 1 138878262 to 138878377 115 - rRNA gene nuclear encoded rRNA 5S 217
Tssr9162 1 138913657 to 138913662 5 + TSS region transcription start site region 9162
Gm3933 1 138915605 to 138916043 438 - pseudogene predicted gene 3933
Tssr9163 1 138960155 to 138960175 20 + TSS region transcription start site region 9163
Tssr9164 1 138960176 to 138960187 11 + TSS region transcription start site region 9164
Gm37045 1 138960441 to 138962903 2462 - unclassified gene predicted gene, 37045
Cpgi831 1 138963059 to 138964308 1249 CpG island CpG island 831
Dennd1b 1 138963220 to 139176043 212823 + protein coding gene DENN/MADD domain containing 1B
Tssr9165 1 138963417 to 138963472 55 + TSS region transcription start site region 9165
Tssr9166 1 138963629 to 138963684 55 + TSS region transcription start site region 9166
Tssr9167 1 138963717 to 138963808 91 + TSS region transcription start site region 9167
Gm37423 1 138968510 to 138971851 3341 + unclassified non-coding RNA gene predicted gene, 37423
Tssr9168 1 138971234 to 138971245 11 + TSS region transcription start site region 9168
4930596I21Rik 1 138977657 to 138979246 1589 + sense intronic lncRNA gene RIKEN cDNA 4930596I21 gene
Gm18553 1 138983872 to 138984480 608 - pseudogene predicted gene, 18553
Gm16305 1 138991514 to 138992069 555 - pseudogene predicted gene 16305
Gm37470 1 139030185 to 139032982 2797 + unclassified gene predicted gene, 37470
Tssr9169 1 139056758 to 139056763 5 + TSS region transcription start site region 9169
Gm43544 1 139070213 to 139072684 2471 + unclassified gene predicted gene 43544
Gm37655 1 139082862 to 139086984 4122 - unclassified gene predicted gene, 37655
Gm16304 1 139133891 to 139134665 774 - pseudogene predicted gene 16304
Gm37718 1 139155152 to 139157782 2630 + unclassified gene predicted gene, 37718
Gm41960 1 139163918 to 139167691 3773 - lncRNA gene predicted gene, 41960
Tssr9170 1 139172060 to 139172072 12 + TSS region transcription start site region 9170
Crb1 1 139197056 to 139377100 180044 - protein coding gene crumbs family member 1, photoreceptor morphogenesis associated
Tssr14054 1 139214802 to 139214805 3 - TSS region transcription start site region 14054
Tssr14055 1 139255674 to 139255683 9 - TSS region transcription start site region 14055
Tssr14056 1 139255711 to 139255728 17 - TSS region transcription start site region 14056
Tssr14057 1 139255755 to 139255765 10 - TSS region transcription start site region 14057
Tssr9171 1 139268285 to 139268289 4 + TSS region transcription start site region 9171
D1Mit394 1 139280373 to 139280497 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 394
Tssr14058 1 139304767 to 139304774 7 - TSS region transcription start site region 14058
Tssr14059 1 139376969 to 139376983 14 - TSS region transcription start site region 14059
Tssr14060 1 139377019 to 139377034 15 - TSS region transcription start site region 14060
Tssr14061 1 139377047 to 139377078 31 - TSS region transcription start site region 14061
Tssr14062 1 139377094 to 139377110 16 - TSS region transcription start site region 14062
4933436E23Rik 1 139379452 to 139402852 23400 + lincRNA gene RIKEN cDNA 4933436E23 gene
Gm34816 1 139408280 to 139413864 5584 + lincRNA gene predicted gene, 34816
D1Mit422 1 139410632 to 139410748 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 422
Cpgi832 1 139421686 to 139422856 1170 CpG island CpG island 832