Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:138137697-139001356

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptprc 1 138062861 to 138175708 112847 - protein coding gene protein tyrosine phosphatase, receptor type, C
Tssr14008 1 138142322 to 138142333 11 - TSS region transcription start site region 14008
Tssr14009 1 138145037 to 138145040 3 - TSS region transcription start site region 14009
Tssr9142 1 138145413 to 138145423 10 + TSS region transcription start site region 9142
Tssr9143 1 138149190 to 138149200 10 + TSS region transcription start site region 9143
Tssr9144 1 138152403 to 138152440 37 + TSS region transcription start site region 9144
Tssr14010 1 138155582 to 138155586 4 - TSS region transcription start site region 14010
Tssr14011 1 138157618 to 138157637 19 - TSS region transcription start site region 14011
Tssr14012 1 138159073 to 138159085 12 - TSS region transcription start site region 14012
Tssr9145 1 138159226 to 138159238 12 + TSS region transcription start site region 9145
A130071D04Rik 1 138161820 to 138167683 5863 - unclassified gene RIKEN cDNA A130071D04 gene
Tssr14013 1 138162544 to 138162557 13 - TSS region transcription start site region 14013
Tssr9146 1 138163114 to 138163127 13 + TSS region transcription start site region 9146
Tssr14014 1 138164757 to 138164766 9 - TSS region transcription start site region 14014
Tssr9147 1 138164934 to 138164941 7 + TSS region transcription start site region 9147
Tssr14015 1 138165188 to 138165200 12 - TSS region transcription start site region 14015
Tssr14016 1 138165266 to 138165287 21 - TSS region transcription start site region 14016
Tssr9148 1 138166677 to 138166681 4 + TSS region transcription start site region 9148
Tssr9149 1 138166770 to 138166782 12 + TSS region transcription start site region 9149
Tssr14017 1 138172152 to 138172166 14 - TSS region transcription start site region 14017
Tssr9150 1 138172297 to 138172300 3 + TSS region transcription start site region 9150
Tssr9151 1 138172304 to 138172315 11 + TSS region transcription start site region 9151
Tssr9152 1 138172713 to 138172731 18 + TSS region transcription start site region 9152
Tssr14018 1 138174282 to 138174304 22 - TSS region transcription start site region 14018
Tssr14019 1 138174311 to 138174339 28 - TSS region transcription start site region 14019
Tssr14020 1 138174343 to 138174348 5 - TSS region transcription start site region 14020
Tssr9153 1 138174447 to 138174458 11 + TSS region transcription start site region 9153
Tssr14021 1 138175181 to 138175198 17 - TSS region transcription start site region 14021
Tssr14022 1 138175238 to 138175254 16 - TSS region transcription start site region 14022
Tssr14023 1 138175283 to 138175311 28 - TSS region transcription start site region 14023
Tssr233 1 138175618 to 138175625 7 - TSS region transcription start site region 233
Tssr14024 1 138175626 to 138175644 18 - TSS region transcription start site region 14024
Tssr9154 1 138175628 to 138175637 9 + TSS region transcription start site region 9154
Tssr14025 1 138175653 to 138175660 7 - TSS region transcription start site region 14025
Tssr14026 1 138175671 to 138175688 17 - TSS region transcription start site region 14026
Tssr9155 1 138175691 to 138175700 9 + TSS region transcription start site region 9155
Tssr14027 1 138175692 to 138175704 12 - TSS region transcription start site region 14027
Tssr14028 1 138175718 to 138175740 22 - TSS region transcription start site region 14028
Tssr14029 1 138175742 to 138175764 22 - TSS region transcription start site region 14029
Tssr14030 1 138175896 to 138175912 16 - TSS region transcription start site region 14030
Tssr14031 1 138175913 to 138175936 23 - TSS region transcription start site region 14031
Tssr9156 1 138180367 to 138180382 15 + TSS region transcription start site region 9156
Gm18667 1 138184101 to 138184584 483 + pseudogene predicted gene, 18667
Gm28556 1 138190194 to 138192127 1933 - lincRNA gene predicted gene 28556
1700113B19Rik 1 138261642 to 138262061 419 + unclassified gene RIKEN cDNA 1700113B19 gene
Tssr9157 1 138273722 to 138273769 47 + TSS region transcription start site region 9157
Atp6v1g3 1 138273738 to 138289462 15724 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit G3
Tssr9158 1 138273770 to 138273781 11 + TSS region transcription start site region 9158
Tssr234 1 138283546 to 138283556 10 + TSS region transcription start site region 234
Tssr9159 1 138303549 to 138303569 20 + TSS region transcription start site region 9159
Tssr14032 1 138304162 to 138304166 4 - TSS region transcription start site region 14032
Tssr9160 1 138304455 to 138304492 37 + TSS region transcription start site region 9160
Tssr9161 1 138304770 to 138304783 13 + TSS region transcription start site region 9161
Gm28500 1 138377264 to 138377414 150 + pseudogene predicted gene 28500
Nek7 1 138483837 to 138619757 135920 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 7
Tssr14033 1 138484887 to 138484904 17 - TSS region transcription start site region 14033
Tssr14034 1 138485321 to 138485326 5 - TSS region transcription start site region 14034
Tssr14035 1 138494174 to 138494200 26 - TSS region transcription start site region 14035
Gm28501 1 138515615 to 138550009 34394 + antisense lncRNA gene predicted gene 28501
Tssr14036 1 138536201 to 138536205 4 - TSS region transcription start site region 14036
Gm37080 1 138552305 to 138554708 2403 - unclassified gene predicted gene, 37080
Gm37101 1 138567697 to 138571356 3659 - unclassified gene predicted gene, 37101
Tssr14037 1 138582313 to 138582325 12 - TSS region transcription start site region 14037
Tssr14038 1 138582370 to 138582379 9 - TSS region transcription start site region 14038
Tssr14039 1 138598929 to 138598932 3 - TSS region transcription start site region 14039
Tssr14040 1 138606580 to 138606609 29 - TSS region transcription start site region 14040
Tssr14041 1 138614413 to 138614424 11 - TSS region transcription start site region 14041
Cpgi823 1 138619028 to 138619961 933 CpG island CpG island 823
Tssr14042 1 138619199 to 138619207 8 - TSS region transcription start site region 14042
Tssr14043 1 138619645 to 138619654 9 - TSS region transcription start site region 14043
Tssr14044 1 138619665 to 138619683 18 - TSS region transcription start site region 14044
Tssr14045 1 138619687 to 138619759 72 - TSS region transcription start site region 14045
Tssr14046 1 138620214 to 138620227 13 - TSS region transcription start site region 14046
Gm5833 1 138640095 to 138682075 41980 - lincRNA gene predicted gene 5833
Gm8790 1 138689524 to 138689845 321 - pseudogene predicted gene 8790
Lhx9 1 138825186 to 138848577 23391 - protein coding gene LIM homeobox protein 9
Cpgi824 1 138831439 to 138831658 219 CpG island CpG island 824
Cpgi825 1 138838331 to 138838671 340 CpG island CpG island 825
Cpgi826 1 138839899 to 138840250 351 CpG island CpG island 826
Cpgi827 1 138841482 to 138842051 569 CpG island CpG island 827
Tssr14047 1 138842437 to 138842455 18 - TSS region transcription start site region 14047
Tssr14048 1 138842465 to 138842477 12 - TSS region transcription start site region 14048
Cpgi828 1 138843492 to 138843946 454 CpG island CpG island 828
Tssr14049 1 138847387 to 138847399 12 - TSS region transcription start site region 14049
Tssr14050 1 138847616 to 138847631 15 - TSS region transcription start site region 14050
Cpgi829 1 138848059 to 138849110 1051 CpG island CpG island 829
Tssr14051 1 138848588 to 138848603 15 - TSS region transcription start site region 14051
2310009B15Rik 1 138851983 to 138856852 4869 - protein coding gene RIKEN cDNA 2310009B15 gene
Cpgi830 1 138856500 to 138856964 464 CpG island CpG island 830
Tssr14052 1 138856819 to 138856848 29 - TSS region transcription start site region 14052
1700019P21Rik 1 138876272 to 138876951 679 - lincRNA gene RIKEN cDNA 1700019P21 gene
Tssr14053 1 138876930 to 138876952 22 - TSS region transcription start site region 14053
n-R5s217 1 138878262 to 138878377 115 - rRNA gene nuclear encoded rRNA 5S 217
Tssr9162 1 138913657 to 138913662 5 + TSS region transcription start site region 9162
Gm3933 1 138915605 to 138916043 438 - pseudogene predicted gene 3933
Tssr9163 1 138960155 to 138960175 20 + TSS region transcription start site region 9163
Tssr9164 1 138960176 to 138960187 11 + TSS region transcription start site region 9164
Gm37045 1 138960441 to 138962903 2462 - unclassified gene predicted gene, 37045
Cpgi831 1 138963059 to 138964308 1249 CpG island CpG island 831
Dennd1b 1 138963220 to 139176043 212823 + protein coding gene DENN/MADD domain containing 1B
Tssr9165 1 138963417 to 138963472 55 + TSS region transcription start site region 9165
Tssr9166 1 138963629 to 138963684 55 + TSS region transcription start site region 9166
Tssr9167 1 138963717 to 138963808 91 + TSS region transcription start site region 9167
Gm37423 1 138968510 to 138971851 3341 + unclassified non-coding RNA gene predicted gene, 37423
Tssr9168 1 138971234 to 138971245 11 + TSS region transcription start site region 9168
4930596I21Rik 1 138977657 to 138979246 1589 + sense intronic lncRNA gene RIKEN cDNA 4930596I21 gene
Gm18553 1 138983872 to 138984480 608 - pseudogene predicted gene, 18553
Gm16305 1 138991514 to 138992069 555 - pseudogene predicted gene 16305