Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:137861710-138071715

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr13967 1 137898377 to 137898419 42 - TSS region transcription start site region 13967
Gm4258 1 137898477 to 137960785 62308 + unclassified non-coding RNA gene predicted gene 4258
Tssr9099 1 137898560 to 137898617 57 + TSS region transcription start site region 9099
A630083H20Rik 1 137898594 to 137899728 1134 unclassified gene RIKEN cDNA A630083H20 gene
Tssr9100 1 137898625 to 137898628 3 + TSS region transcription start site region 9100
Tssr9101 1 137898654 to 137898664 10 + TSS region transcription start site region 9101
Tssr9102 1 137898677 to 137898701 24 + TSS region transcription start site region 9102
Tssr9103 1 137898709 to 137898731 22 + TSS region transcription start site region 9103
Tssr9104 1 137899400 to 137899415 15 + TSS region transcription start site region 9104
Tssr9105 1 137901180 to 137901190 10 + TSS region transcription start site region 9105
Tssr9106 1 137906030 to 137906059 29 + TSS region transcription start site region 9106
Tssr9107 1 137906086 to 137906097 11 + TSS region transcription start site region 9107
Tssr9108 1 137906761 to 137906770 9 + TSS region transcription start site region 9108
Tssr9109 1 137906783 to 137906792 9 + TSS region transcription start site region 9109
Tssr9110 1 137906805 to 137906825 20 + TSS region transcription start site region 9110
Tssr9111 1 137906843 to 137906857 14 + TSS region transcription start site region 9111
Tssr9112 1 137907026 to 137907027 1 + TSS region transcription start site region 9112
Tssr9113 1 137908912 to 137908949 37 + TSS region transcription start site region 9113
Gm37298 1 137909291 to 137913158 3867 + unclassified gene predicted gene, 37298
Tssr9114 1 137912853 to 137912858 5 + TSS region transcription start site region 9114
Tssr9115 1 137916573 to 137916580 7 + TSS region transcription start site region 9115
Gm26979 1 137917690 to 137921312 3622 - lincRNA gene predicted gene, 26979
Tssr9116 1 137918773 to 137918781 8 + TSS region transcription start site region 9116
Tssr9117 1 137920683 to 137920694 11 + TSS region transcription start site region 9117
Tssr9118 1 137920887 to 137920900 13 + TSS region transcription start site region 9118
Gm37124 1 137924388 to 137926379 1991 + unclassified gene predicted gene, 37124
Tssr9119 1 137924892 to 137924904 12 + TSS region transcription start site region 9119
Tssr9120 1 137924988 to 137925010 22 + TSS region transcription start site region 9120
A130050O07Rik 1 137927251 to 137930273 3022 + unclassified gene RIKEN cDNA A130050O07 gene
Tssr9121 1 137928100 to 137928135 35 + TSS region transcription start site region 9121
Gm26936 1 137928389 to 137969240 40851 - lincRNA gene predicted gene, 26936
Tssr9122 1 137931747 to 137931764 17 + TSS region transcription start site region 9122
Tssr9123 1 137931785 to 137931796 11 + TSS region transcription start site region 9123
Tssr9124 1 137931852 to 137931863 11 + TSS region transcription start site region 9124
Gm26930 1 137932041 to 137933284 1243 + sense intronic lncRNA gene predicted gene, 26930
D130019J16Rik 1 137935189 to 137937346 2157 + unclassified gene RIKEN cDNA D130019J16 gene
Tssr9125 1 137937025 to 137937030 5 + TSS region transcription start site region 9125
Tssr9126 1 137943156 to 137943188 32 + TSS region transcription start site region 9126
Tssr9127 1 137946005 to 137946009 4 + TSS region transcription start site region 9127
Tssr9128 1 137948685 to 137948690 5 + TSS region transcription start site region 9128
Gm37534 1 137949422 to 137954643 5221 + unclassified gene predicted gene, 37534
C530045E16Rik 1 137957824 to 137960626 2802 unclassified gene RIKEN cDNA C530045E16 gene
Tssr9129 1 137960495 to 137960503 8 + TSS region transcription start site region 9129
Tssr9130 1 137961470 to 137961477 7 + TSS region transcription start site region 9130
Tssr9131 1 137965424 to 137965442 18 + TSS region transcription start site region 9131
Mirc14 1 137966455 to 137966718 263 complex/cluster/region microRNA cluster 14, including Mir181a-1 through Mir181b-1
Mir181a-1 1 137966455 to 137966541 86 + miRNA gene microRNA 181a-1
Tssr9132 1 137966529 to 137966532 3 + TSS region transcription start site region 9132
A430106G13Rik 1 137966531 to 137969918 3387 + lincRNA gene RIKEN cDNA A430106G13 gene
Mir181b-1 1 137966639 to 137966718 79 + miRNA gene microRNA 181b-1
Tssr9133 1 137966710 to 137966715 5 + TSS region transcription start site region 9133
Tssr232 1 137966796 to 137966799 3 + TSS region transcription start site region 232
Tssr9134 1 137967753 to 137967762 9 + TSS region transcription start site region 9134
Tssr13968 1 137969213 to 137969243 30 - TSS region transcription start site region 13968
Tssr9135 1 137969215 to 137969227 12 + TSS region transcription start site region 9135
Tssr9136 1 137969659 to 137969669 10 + TSS region transcription start site region 9136
Tssr9137 1 137971170 to 137971186 16 + TSS region transcription start site region 9137
Gm37632 1 137971174 to 137972315 1141 + unclassified gene predicted gene, 37632
Tssr9138 1 137974631 to 137974639 8 + TSS region transcription start site region 9138
Gm23782 1 137987657 to 137987776 119 - rRNA gene predicted gene, 23782
Gm34353 1 137995762 to 138011958 16196 + lncRNA gene predicted gene, 34353
Ptprc 1 138062861 to 138175708 112847 - protein coding gene protein tyrosine phosphatase, receptor type, C
Tssr13969 1 138064053 to 138064101 48 - TSS region transcription start site region 13969
D1Mit514 1 138064218 to 138064333 115 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-514