Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:136579162-140029166

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369 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33994 1 136576938 to 136579477 2539 - lincRNA gene predicted gene, 33994
Tssr9072 1 136579640 to 136579651 11 + TSS region transcription start site region 9072
Tssr9073 1 136579666 to 136579673 7 + TSS region transcription start site region 9073
Tssr13942 1 136580529 to 136580547 18 - TSS region transcription start site region 13942
Tssr13943 1 136580554 to 136580562 8 - TSS region transcription start site region 13943
Tssr13944 1 136580581 to 136580589 8 - TSS region transcription start site region 13944
4933409D19Rik 1 136603033 to 136605468 2435 - lincRNA gene RIKEN cDNA 4933409D19 gene
Cpgi814 1 136605459 to 136605643 184 CpG island CpG island 814
Tssr13945 1 136608482 to 136608487 5 - TSS region transcription start site region 13945
Platr23 1 136622098 to 136624650 2552 - lincRNA gene pluripotency associated transcript 23
Cpgi815 1 136624457 to 136626112 1655 CpG island CpG island 815
Zfp281 1 136624901 to 136630053 5152 + protein coding gene zinc finger protein 281
Tssr9074 1 136624933 to 136624949 16 + TSS region transcription start site region 9074
Tssr9075 1 136624951 to 136624995 44 + TSS region transcription start site region 9075
Tssr9076 1 136624997 to 136625020 23 + TSS region transcription start site region 9076
Tssr9077 1 136626094 to 136626139 45 + TSS region transcription start site region 9077
Tssr9078 1 136627799 to 136627821 22 + TSS region transcription start site region 9078
Tssr9079 1 136638578 to 136638584 6 + TSS region transcription start site region 9079
Gm34056 1 136650442 to 136662730 12288 - lncRNA gene predicted gene, 34056
Gm41958 1 136662099 to 136682575 20476 + protein coding gene predicted gene, 41958
Tssr9080 1 136662146 to 136662159 13 + TSS region transcription start site region 9080
Cpgi816 1 136670504 to 136670733 229 CpG island CpG island 816
Tssr9081 1 136674690 to 136674699 9 + TSS region transcription start site region 9081
Tssr13946 1 136674768 to 136674830 62 - TSS region transcription start site region 13946
Tssr9082 1 136676413 to 136676443 30 + TSS region transcription start site region 9082
Tssr9083 1 136677162 to 136677214 52 + TSS region transcription start site region 9083
Tssr9084 1 136677244 to 136677249 5 + TSS region transcription start site region 9084
Tssr9085 1 136678140 to 136678154 14 + TSS region transcription start site region 9085
Tssr9086 1 136678158 to 136678181 23 + TSS region transcription start site region 9086
Tssr9087 1 136680456 to 136680476 20 + TSS region transcription start site region 9087
Tssr9088 1 136683375 to 136683410 35 + TSS region transcription start site region 9088
Gm19705 1 136683396 to 136690805 7409 + lincRNA gene predicted gene, 19705
Tssr9089 1 136683661 to 136683670 9 + TSS region transcription start site region 9089
Tssr231 1 136685228 to 136685252 24 - TSS region transcription start site region 231
Tssr9090 1 136690530 to 136690534 4 + TSS region transcription start site region 9090
Tssr9091 1 136692852 to 136692859 7 + TSS region transcription start site region 9091
Tssr9092 1 136696198 to 136696213 15 + TSS region transcription start site region 9092
Platr22 1 136696211 to 136725728 29517 + lincRNA gene pluripotency associated transcript 22
Tssr9093 1 136696260 to 136696271 11 + TSS region transcription start site region 9093
Tssr9094 1 136696402 to 136696414 12 + TSS region transcription start site region 9094
Gm24086 1 136697374 to 136697471 97 + snRNA gene predicted gene, 24086
Tssr9095 1 136699650 to 136699659 9 + TSS region transcription start site region 9095
D1Mit538 1 136757191 to 136757339 148 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 538
Gm22132 1 136757510 to 136757609 99 - miRNA gene predicted gene, 22132
Cpgi817 1 136781709 to 136782031 322 CpG island CpG island 817
Cpgi818 1 136789088 to 136789682 594 CpG island CpG island 818
Gm8762 1 136789182 to 136789520 338 - pseudogene predicted gene 8762
Tssr13947 1 136789572 to 136789573 1 - TSS region transcription start site region 13947
Gm29718 1 136793034 to 136793510 476 + pseudogene predicted gene, 29718
Gm17781 1 136798311 to 136798959 648 - pseudogene predicted gene, 17781
Nr5a2 1 136842571 to 136960448 117877 - protein coding gene nuclear receptor subfamily 5, group A, member 2
D1Ertd811e 1 136921330 to 136921570 240 DNA segment DNA segment, Chr 1, ERATO Doi 811, expressed
Tssr13948 1 136929299 to 136929310 11 - TSS region transcription start site region 13948
Tssr13949 1 136942303 to 136942305 2 - TSS region transcription start site region 13949
Tssr13950 1 136946199 to 136946205 6 - TSS region transcription start site region 13950
Cpgi819 1 136947195 to 136947451 256 CpG island CpG island 819
Cpgi820 1 136948567 to 136949413 846 CpG island CpG island 820
Tssr13951 1 136949171 to 136949189 18 - TSS region transcription start site region 13951
Tssr13952 1 136949432 to 136949461 29 - TSS region transcription start site region 13952
Tssr13953 1 136949470 to 136949497 27 - TSS region transcription start site region 13953
Tssr13954 1 136949502 to 136949526 24 - TSS region transcription start site region 13954
Tssr13955 1 136949540 to 136949552 12 - TSS region transcription start site region 13955
Tssr13956 1 136949579 to 136949584 5 - TSS region transcription start site region 13956
Tssr13957 1 136949591 to 136949599 8 - TSS region transcription start site region 13957
Tssr9096 1 136949697 to 136949701 4 + TSS region transcription start site region 9096
Cpgi821 1 136952170 to 136953248 1078 CpG island CpG island 821
Tssr13958 1 136953526 to 136953571 45 - TSS region transcription start site region 13958
Tssr13959 1 136953600 to 136953605 5 - TSS region transcription start site region 13959
Tssr13960 1 136960471 to 136960494 23 - TSS region transcription start site region 13960
Tssr13961 1 136960499 to 136960528 29 - TSS region transcription start site region 13961
Tssr13962 1 136960535 to 136960553 18 - TSS region transcription start site region 13962
Rnu7-ps3 1 136990207 to 136990270 63 - pseudogene U7 small nuclear RNA, pseudogene 3
Gm23763 1 136990211 to 136990270 59 - snRNA gene predicted gene, 23763
Gm25609 1 137215544 to 137215647 103 - snRNA gene predicted gene, 25609
Gm19215 1 137250473 to 137251068 595 - pseudogene predicted gene, 19215
Gm37057 1 137252142 to 137254057 1915 + unclassified gene predicted gene, 37057
Tssr9097 1 137289772 to 137289777 5 + TSS region transcription start site region 9097
1700006P03Rik 1 137325434 to 137325842 408 - unclassified gene RIKEN cDNA 1700006P03 gene
Tssr13963 1 137325835 to 137325841 6 - TSS region transcription start site region 13963
Gm34244 1 137353553 to 137357785 4232 + lncRNA gene predicted gene, 34244
Gm23534 1 137367151 to 137367247 96 - snoRNA gene predicted gene, 23534
Cpgi822 1 137425838 to 137426027 189 CpG island CpG island 822
Gm37903 1 137528850 to 137531230 2380 - unclassified gene predicted gene, 37903
D1Mit537 1 137727639 to 137727748 109 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 537
Gm22727 1 137734318 to 137734433 115 + snoRNA gene predicted gene, 22727
Tssr13964 1 137751422 to 137751430 8 - TSS region transcription start site region 13964
Tssr13965 1 137751592 to 137751619 27 - TSS region transcription start site region 13965
Gm37099 1 137764077 to 137767527 3450 - unclassified gene predicted gene, 37099
Gm34306 1 137767853 to 137788163 20310 + lncRNA gene predicted gene, 34306
Tssr13966 1 137806797 to 137806814 17 - TSS region transcription start site region 13966
Tssr9098 1 137807249 to 137807270 21 + TSS region transcription start site region 9098
Gm37293 1 137811849 to 137812143 294 + unclassified gene predicted gene, 37293
Tssr13967 1 137898377 to 137898419 42 - TSS region transcription start site region 13967
Gm4258 1 137898477 to 137960785 62308 + unclassified non-coding RNA gene predicted gene 4258
Tssr9099 1 137898560 to 137898617 57 + TSS region transcription start site region 9099
A630083H20Rik 1 137898594 to 137899728 1134 unclassified gene RIKEN cDNA A630083H20 gene
Tssr9100 1 137898625 to 137898628 3 + TSS region transcription start site region 9100
Tssr9101 1 137898654 to 137898664 10 + TSS region transcription start site region 9101
Tssr9102 1 137898677 to 137898701 24 + TSS region transcription start site region 9102
Tssr9103 1 137898709 to 137898731 22 + TSS region transcription start site region 9103
Tssr9104 1 137899400 to 137899415 15 + TSS region transcription start site region 9104
Tssr9105 1 137901180 to 137901190 10 + TSS region transcription start site region 9105
Tssr9106 1 137906030 to 137906059 29 + TSS region transcription start site region 9106
Tssr9107 1 137906086 to 137906097 11 + TSS region transcription start site region 9107
Tssr9108 1 137906761 to 137906770 9 + TSS region transcription start site region 9108
Tssr9109 1 137906783 to 137906792 9 + TSS region transcription start site region 9109
Tssr9110 1 137906805 to 137906825 20 + TSS region transcription start site region 9110
Tssr9111 1 137906843 to 137906857 14 + TSS region transcription start site region 9111
Tssr9112 1 137907026 to 137907027 1 + TSS region transcription start site region 9112
Tssr9113 1 137908912 to 137908949 37 + TSS region transcription start site region 9113
Gm37298 1 137909291 to 137913158 3867 + unclassified gene predicted gene, 37298
Tssr9114 1 137912853 to 137912858 5 + TSS region transcription start site region 9114
Tssr9115 1 137916573 to 137916580 7 + TSS region transcription start site region 9115
Gm26979 1 137917690 to 137921312 3622 - lincRNA gene predicted gene, 26979
Tssr9116 1 137918773 to 137918781 8 + TSS region transcription start site region 9116
Tssr9117 1 137920683 to 137920694 11 + TSS region transcription start site region 9117
Tssr9118 1 137920887 to 137920900 13 + TSS region transcription start site region 9118
Gm37124 1 137924388 to 137926379 1991 + unclassified gene predicted gene, 37124
Tssr9119 1 137924892 to 137924904 12 + TSS region transcription start site region 9119
Tssr9120 1 137924988 to 137925010 22 + TSS region transcription start site region 9120
A130050O07Rik 1 137927251 to 137930273 3022 + unclassified gene RIKEN cDNA A130050O07 gene
Tssr9121 1 137928100 to 137928135 35 + TSS region transcription start site region 9121
Gm26936 1 137928389 to 137969240 40851 - lincRNA gene predicted gene, 26936
Tssr9122 1 137931747 to 137931764 17 + TSS region transcription start site region 9122
Tssr9123 1 137931785 to 137931796 11 + TSS region transcription start site region 9123
Tssr9124 1 137931852 to 137931863 11 + TSS region transcription start site region 9124
Gm26930 1 137932041 to 137933284 1243 + sense intronic lncRNA gene predicted gene, 26930
D130019J16Rik 1 137935189 to 137937346 2157 + unclassified gene RIKEN cDNA D130019J16 gene
Tssr9125 1 137937025 to 137937030 5 + TSS region transcription start site region 9125
Tssr9126 1 137943156 to 137943188 32 + TSS region transcription start site region 9126
Tssr9127 1 137946005 to 137946009 4 + TSS region transcription start site region 9127
Tssr9128 1 137948685 to 137948690 5 + TSS region transcription start site region 9128
Gm37534 1 137949422 to 137954643 5221 + unclassified gene predicted gene, 37534
C530045E16Rik 1 137957824 to 137960626 2802 unclassified gene RIKEN cDNA C530045E16 gene
Tssr9129 1 137960495 to 137960503 8 + TSS region transcription start site region 9129
Tssr9130 1 137961470 to 137961477 7 + TSS region transcription start site region 9130
Tssr9131 1 137965424 to 137965442 18 + TSS region transcription start site region 9131
Mir181a-1 1 137966455 to 137966541 86 + miRNA gene microRNA 181a-1
Mirc14 1 137966455 to 137966718 263 complex/cluster/region microRNA cluster 14, including Mir181a-1 through Mir181b-1
Tssr9132 1 137966529 to 137966532 3 + TSS region transcription start site region 9132
A430106G13Rik 1 137966531 to 137969918 3387 + lincRNA gene RIKEN cDNA A430106G13 gene
Mir181b-1 1 137966639 to 137966718 79 + miRNA gene microRNA 181b-1
Tssr9133 1 137966710 to 137966715 5 + TSS region transcription start site region 9133
Tssr232 1 137966796 to 137966799 3 + TSS region transcription start site region 232
Tssr9134 1 137967753 to 137967762 9 + TSS region transcription start site region 9134
Tssr13968 1 137969213 to 137969243 30 - TSS region transcription start site region 13968
Tssr9135 1 137969215 to 137969227 12 + TSS region transcription start site region 9135
Tssr9136 1 137969659 to 137969669 10 + TSS region transcription start site region 9136
Tssr9137 1 137971170 to 137971186 16 + TSS region transcription start site region 9137
Gm37632 1 137971174 to 137972315 1141 + unclassified gene predicted gene, 37632
Tssr9138 1 137974631 to 137974639 8 + TSS region transcription start site region 9138
Gm23782 1 137987657 to 137987776 119 - rRNA gene predicted gene, 23782
Gm34353 1 137995762 to 138011958 16196 + lncRNA gene predicted gene, 34353
Ptprc 1 138062861 to 138175708 112847 - protein coding gene protein tyrosine phosphatase, receptor type, C
Tssr13969 1 138064053 to 138064101 48 - TSS region transcription start site region 13969
D1Mit514 1 138064218 to 138064333 115 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-514
Tssr13970 1 138073663 to 138073705 42 - TSS region transcription start site region 13970
Tssr13971 1 138078559 to 138078575 16 - TSS region transcription start site region 13971
Tssr13972 1 138078588 to 138078604 16 - TSS region transcription start site region 13972
Tssr13973 1 138080195 to 138080207 12 - TSS region transcription start site region 13973
Tssr13974 1 138080250 to 138080265 15 - TSS region transcription start site region 13974
Tssr13975 1 138080271 to 138080280 9 - TSS region transcription start site region 13975
Tssr13976 1 138080876 to 138080893 17 - TSS region transcription start site region 13976
Tssr13977 1 138080899 to 138080936 37 - TSS region transcription start site region 13977
Tssr13978 1 138082166 to 138082191 25 - TSS region transcription start site region 13978
Tssr13979 1 138083644 to 138083663 19 - TSS region transcription start site region 13979
Tssr13980 1 138090469 to 138090477 8 - TSS region transcription start site region 13980
Tssr13981 1 138097454 to 138097488 34 - TSS region transcription start site region 13981
Tssr13982 1 138099595 to 138099607 12 - TSS region transcription start site region 13982
Tssr13983 1 138099643 to 138099682 39 - TSS region transcription start site region 13983
Tssr13984 1 138101130 to 138101163 33 - TSS region transcription start site region 13984
Tssr13985 1 138101414 to 138101419 5 - TSS region transcription start site region 13985
Tssr13986 1 138102835 to 138102857 22 - TSS region transcription start site region 13986
Tssr13987 1 138107820 to 138107851 31 - TSS region transcription start site region 13987
Tssr13988 1 138117589 to 138117594 5 - TSS region transcription start site region 13988
Tssr13989 1 138119162 to 138119183 21 - TSS region transcription start site region 13989
Tssr13990 1 138119805 to 138119822 17 - TSS region transcription start site region 13990
Tssr13991 1 138121440 to 138121466 26 - TSS region transcription start site region 13991
Tssr13992 1 138121487 to 138121499 12 - TSS region transcription start site region 13992
Tssr13993 1 138121507 to 138121519 12 - TSS region transcription start site region 13993
Tssr13994 1 138121807 to 138121832 25 - TSS region transcription start site region 13994
Tssr13995 1 138122871 to 138122923 52 - TSS region transcription start site region 13995
Tssr13996 1 138123482 to 138123522 40 - TSS region transcription start site region 13996
Tssr13997 1 138123532 to 138123543 11 - TSS region transcription start site region 13997
Tssr13998 1 138123597 to 138123615 18 - TSS region transcription start site region 13998
Tssr13999 1 138123669 to 138123681 12 - TSS region transcription start site region 13999
Tssr14000 1 138123788 to 138123800 12 - TSS region transcription start site region 14000
Tssr14001 1 138123805 to 138123840 35 - TSS region transcription start site region 14001
Tssr14002 1 138124039 to 138124062 23 - TSS region transcription start site region 14002
Tssr14003 1 138136453 to 138136466 13 - TSS region transcription start site region 14003
Tssr14004 1 138136473 to 138136498 25 - TSS region transcription start site region 14004
Tssr14005 1 138136509 to 138136532 23 - TSS region transcription start site region 14005
Tssr14006 1 138136534 to 138136547 13 - TSS region transcription start site region 14006
Tssr14007 1 138137124 to 138137131 7 - TSS region transcription start site region 14007
Tssr9139 1 138137385 to 138137388 3 + TSS region transcription start site region 9139
Tssr9140 1 138137394 to 138137395 1 + TSS region transcription start site region 9140
Tssr9141 1 138137414 to 138137424 10 + TSS region transcription start site region 9141
Tssr14008 1 138142322 to 138142333 11 - TSS region transcription start site region 14008
Tssr14009 1 138145037 to 138145040 3 - TSS region transcription start site region 14009
Tssr9142 1 138145413 to 138145423 10 + TSS region transcription start site region 9142