Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:136230271-136625158

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Inava 1 136213531 to 136234264 20733 - protein coding gene innate immunity activator
Tssr13922 1 136230307 to 136230332 25 - TSS region transcription start site region 13922
Tssr13923 1 136230334 to 136230355 21 - TSS region transcription start site region 13923
Tssr13924 1 136230382 to 136230394 12 - TSS region transcription start site region 13924
Cpgi809 1 136233903 to 136234711 808 CpG island CpG island 809
Tssr13925 1 136234038 to 136234051 13 - TSS region transcription start site region 13925
Tssr13926 1 136234053 to 136234080 27 - TSS region transcription start site region 13926
Tssr13927 1 136234113 to 136234134 21 - TSS region transcription start site region 13927
Gm3878 1 136234199 to 136242780 8581 + pseudogene predicted gene 3878
Tssr13928 1 136246753 to 136246756 3 - TSS region transcription start site region 13928
Tssr230 1 136247454 to 136247461 7 - TSS region transcription start site region 230
Tssr13929 1 136247478 to 136247507 29 - TSS region transcription start site region 13929
Tssr13930 1 136247537 to 136247551 14 - TSS region transcription start site region 13930
A430034D21Rik 1 136247662 to 136250476 2814 + lincRNA gene RIKEN cDNA A430034D21 gene
Tssr9052 1 136247679 to 136247701 22 + TSS region transcription start site region 9052
Gm37552 1 136252671 to 136255846 3175 - lincRNA gene predicted gene, 37552
Tssr13931 1 136255750 to 136255771 21 - TSS region transcription start site region 13931
Tssr13932 1 136255858 to 136255876 18 - TSS region transcription start site region 13932
Tssr9053 1 136259397 to 136259425 28 + TSS region transcription start site region 9053
Gm26781 1 136259407 to 136274406 14999 + antisense lncRNA gene predicted gene, 26781
Tssr9054 1 136259432 to 136259462 30 + TSS region transcription start site region 9054
Cpgi810 1 136259444 to 136261091 1647 CpG island CpG island 810
Tssr9055 1 136259657 to 136259688 31 + TSS region transcription start site region 9055
Gpr25 1 136259797 to 136260873 1076 - protein coding gene G protein-coupled receptor 25
Tssr13933 1 136260367 to 136260439 72 - TSS region transcription start site region 13933
Tssr13934 1 136260916 to 136260931 15 - TSS region transcription start site region 13934
Camsap2 1 136268123 to 136346104 77981 - protein coding gene calmodulin regulated spectrin-associated protein family, member 2
Tssr9056 1 136279979 to 136279983 4 + TSS region transcription start site region 9056
Tssr13935 1 136280545 to 136280562 17 - TSS region transcription start site region 13935
Tssr13936 1 136280583 to 136280601 18 - TSS region transcription start site region 13936
D1Mit197 1 136335221 to 136335352 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 197
Tssr9057 1 136345116 to 136345120 4 + TSS region transcription start site region 9057
Cpgi811 1 136345174 to 136346715 1541 CpG island CpG island 811
Tssr13937 1 136345781 to 136345810 29 - TSS region transcription start site region 13937
Tssr13938 1 136345967 to 136345983 16 - TSS region transcription start site region 13938
Tssr13939 1 136346074 to 136346145 71 - TSS region transcription start site region 13939
Tssr9058 1 136364973 to 136364985 12 + TSS region transcription start site region 9058
Tssr9059 1 136364989 to 136365021 32 + TSS region transcription start site region 9059
Tssr9060 1 136365057 to 136365063 6 + TSS region transcription start site region 9060
9230116N13Rik 1 136411916 to 136415519 3603 - lncRNA gene RIKEN cDNA 9230116N13 gene
Cpgi812 1 136414942 to 136415766 824 CpG island CpG island 812
Tssr13940 1 136414957 to 136414980 23 - TSS region transcription start site region 13940
Tssr9061 1 136415267 to 136415278 11 + TSS region transcription start site region 9061
Ddx59 1 136415271 to 136440158 24887 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
Tssr9062 1 136415289 to 136415337 48 + TSS region transcription start site region 9062
Tssr9063 1 136415339 to 136415353 14 + TSS region transcription start site region 9063
Tssr13941 1 136415508 to 136415530 22 - TSS region transcription start site region 13941
Cpgi813 1 136466042 to 136466784 742 CpG island CpG island 813
Tssr9064 1 136466336 to 136466378 42 + TSS region transcription start site region 9064
Kif14 1 136466343 to 136531511 65168 + protein coding gene kinesin family member 14
Tssr9065 1 136466383 to 136466405 22 + TSS region transcription start site region 9065
Gm29486 1 136507409 to 136507780 371 + pseudogene predicted gene 29486
Gm29485 1 136523884 to 136524165 281 + pseudogene predicted gene 29485
Gm37799 1 136541605 to 136555873 14268 + lincRNA gene predicted gene, 37799
Tssr9066 1 136566675 to 136566687 12 + TSS region transcription start site region 9066
Tssr9067 1 136569908 to 136569917 9 + TSS region transcription start site region 9067
Tssr9068 1 136570601 to 136570610 9 + TSS region transcription start site region 9068
Tssr9069 1 136570613 to 136570624 11 + TSS region transcription start site region 9069
Tssr9070 1 136570638 to 136570649 11 + TSS region transcription start site region 9070
Tssr9071 1 136574356 to 136574358 2 + TSS region transcription start site region 9071
Gm33994 1 136576938 to 136579477 2539 - lincRNA gene predicted gene, 33994
Tssr9072 1 136579640 to 136579651 11 + TSS region transcription start site region 9072
Tssr9073 1 136579666 to 136579673 7 + TSS region transcription start site region 9073
Tssr13942 1 136580529 to 136580547 18 - TSS region transcription start site region 13942
Tssr13943 1 136580554 to 136580562 8 - TSS region transcription start site region 13943
Tssr13944 1 136580581 to 136580589 8 - TSS region transcription start site region 13944
4933409D19Rik 1 136603033 to 136605468 2435 - lincRNA gene RIKEN cDNA 4933409D19 gene
Cpgi814 1 136605459 to 136605643 184 CpG island CpG island 814
Tssr13945 1 136608482 to 136608487 5 - TSS region transcription start site region 13945
Platr23 1 136622098 to 136624650 2552 - lincRNA gene pluripotency associated transcript 23
Cpgi815 1 136624457 to 136626112 1655 CpG island CpG island 815
Zfp281 1 136624901 to 136630053 5152 + protein coding gene zinc finger protein 281
Tssr9074 1 136624933 to 136624949 16 + TSS region transcription start site region 9074
Tssr9075 1 136624951 to 136624995 44 + TSS region transcription start site region 9075
Tssr9076 1 136624997 to 136625020 23 + TSS region transcription start site region 9076