Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:135871330-137971570

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271 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkp1 1 135871395 to 135919207 47812 - protein coding gene plakophilin 1
Tssr13903 1 135871887 to 135871889 2 - TSS region transcription start site region 13903
Gm36938 1 135896394 to 135899089 2695 - unclassified gene predicted gene, 36938
Cpgi800 1 135918520 to 135919536 1016 CpG island CpG island 800
Tssr13904 1 135919124 to 135919135 11 - TSS region transcription start site region 13904
Tssr13905 1 135919164 to 135919175 11 - TSS region transcription start site region 13905
Tssr13906 1 135919199 to 135919212 13 - TSS region transcription start site region 13906
Tssr13907 1 135919294 to 135919307 13 - TSS region transcription start site region 13907
Tssr13908 1 135919321 to 135919339 18 - TSS region transcription start site region 13908
Tssr13909 1 135919342 to 135919353 11 - TSS region transcription start site region 13909
Tssr13910 1 135919354 to 135919359 5 - TSS region transcription start site region 13910
Tssr228 1 135924362 to 135924366 4 + TSS region transcription start site region 228
Igfn1 1 135953578 to 136006342 52764 - protein coding gene immunoglobulin-like and fibronectin type III domain containing 1
Tssr13911 1 135984287 to 135984303 16 - TSS region transcription start site region 13911
Tssr13912 1 135984307 to 135984321 14 - TSS region transcription start site region 13912
D1Mit103 1 135985679 to 135985793 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 103
Cpgi801 1 136007428 to 136007896 468 CpG island CpG island 801
Tmem9 1 136008219 to 136035030 26811 + protein coding gene transmembrane protein 9
Tssr9034 1 136015326 to 136015331 5 + TSS region transcription start site region 9034
Cpgi802 1 136017969 to 136018325 356 CpG island CpG island 802
Tssr9035 1 136018000 to 136018042 42 + TSS region transcription start site region 9035
Tssr9036 1 136018063 to 136018068 5 + TSS region transcription start site region 9036
Tssr13913 1 136040894 to 136040927 33 - TSS region transcription start site region 13913
Cpgi803 1 136050498 to 136051763 1265 CpG island CpG island 803
Ascl5 1 136050804 to 136051370 566 + protein coding gene achaete-scute family bHLH transcription factor 5
Tssr9037 1 136052754 to 136052761 7 + TSS region transcription start site region 9037
Tssr9038 1 136052771 to 136052796 25 + TSS region transcription start site region 9038
Tssr9039 1 136052804 to 136052826 22 + TSS region transcription start site region 9039
Cacna1s 1 136052805 to 136119822 67017 + protein coding gene calcium channel, voltage-dependent, L type, alpha 1S subunit
Tssr9040 1 136052946 to 136052958 12 + TSS region transcription start site region 9040
Gm37014 1 136057181 to 136059433 2252 + unclassified gene predicted gene, 37014
Cpgi804 1 136105292 to 136105926 634 CpG island CpG island 804
Gm37759 1 136116577 to 136119822 3245 - antisense lncRNA gene predicted gene, 37759
Gm15850 1 136127719 to 136131183 3464 - lncRNA gene predicted gene 15850
Cpgi805 1 136131117 to 136132267 1150 CpG island CpG island 805
Tssr13914 1 136131175 to 136131185 10 - TSS region transcription start site region 13914
Tssr9041 1 136131363 to 136131381 18 + TSS region transcription start site region 9041
Tssr9042 1 136131382 to 136131404 22 + TSS region transcription start site region 9042
Kif21b 1 136131389 to 136177998 46609 + protein coding gene kinesin family member 21B
Tssr9043 1 136131411 to 136131441 30 + TSS region transcription start site region 9043
Tssr9044 1 136131443 to 136131494 51 + TSS region transcription start site region 9044
Tssr9045 1 136133036 to 136133039 3 + TSS region transcription start site region 9045
Tssr13915 1 136133045 to 136133068 23 - TSS region transcription start site region 13915
Tssr13916 1 136135108 to 136135124 16 - TSS region transcription start site region 13916
Tssr13917 1 136135156 to 136135169 13 - TSS region transcription start site region 13917
Tssr13918 1 136135180 to 136135198 18 - TSS region transcription start site region 13918
Tssr13919 1 136139983 to 136140030 47 - TSS region transcription start site region 13919
Cpgi806 1 136140147 to 136140642 495 CpG island CpG island 806
Tssr13920 1 136140378 to 136140383 5 - TSS region transcription start site region 13920
Tssr9046 1 136145228 to 136145235 7 + TSS region transcription start site region 9046
Tssr9047 1 136146549 to 136146551 2 + TSS region transcription start site region 9047
Tssr9048 1 136146652 to 136146665 13 + TSS region transcription start site region 9048
Tssr9049 1 136162941 to 136162952 11 + TSS region transcription start site region 9049
Tssr9050 1 136172703 to 136172710 7 + TSS region transcription start site region 9050
Mroh3 1 136181652 to 136212828 31176 - protein coding gene maestro heat-like repeat family member 3
Tssr13921 1 136212815 to 136212828 13 - TSS region transcription start site region 13921
Inava 1 136213531 to 136234264 20733 - protein coding gene innate immunity activator
Cpgi807 1 136215766 to 136216410 644 CpG island CpG island 807
Gm26568 1 136216074 to 136225071 8997 + antisense lncRNA gene predicted gene, 26568
Tssr229 1 136220384 to 136220392 8 - TSS region transcription start site region 229
Tssr9051 1 136220730 to 136220734 4 + TSS region transcription start site region 9051
Cpgi808 1 136225259 to 136225522 263 CpG island CpG island 808
Tssr13922 1 136230307 to 136230332 25 - TSS region transcription start site region 13922
Tssr13923 1 136230334 to 136230355 21 - TSS region transcription start site region 13923
Tssr13924 1 136230382 to 136230394 12 - TSS region transcription start site region 13924
Cpgi809 1 136233903 to 136234711 808 CpG island CpG island 809
Tssr13925 1 136234038 to 136234051 13 - TSS region transcription start site region 13925
Tssr13926 1 136234053 to 136234080 27 - TSS region transcription start site region 13926
Tssr13927 1 136234113 to 136234134 21 - TSS region transcription start site region 13927
Gm3878 1 136234199 to 136242780 8581 + pseudogene predicted gene 3878
Tssr13928 1 136246753 to 136246756 3 - TSS region transcription start site region 13928
Tssr230 1 136247454 to 136247461 7 - TSS region transcription start site region 230
Tssr13929 1 136247478 to 136247507 29 - TSS region transcription start site region 13929
Tssr13930 1 136247537 to 136247551 14 - TSS region transcription start site region 13930
A430034D21Rik 1 136247662 to 136250476 2814 + lincRNA gene RIKEN cDNA A430034D21 gene
Tssr9052 1 136247679 to 136247701 22 + TSS region transcription start site region 9052
Gm37552 1 136252671 to 136255846 3175 - lincRNA gene predicted gene, 37552
Tssr13931 1 136255750 to 136255771 21 - TSS region transcription start site region 13931
Tssr13932 1 136255858 to 136255876 18 - TSS region transcription start site region 13932
Tssr9053 1 136259397 to 136259425 28 + TSS region transcription start site region 9053
Gm26781 1 136259407 to 136274406 14999 + antisense lncRNA gene predicted gene, 26781
Tssr9054 1 136259432 to 136259462 30 + TSS region transcription start site region 9054
Cpgi810 1 136259444 to 136261091 1647 CpG island CpG island 810
Tssr9055 1 136259657 to 136259688 31 + TSS region transcription start site region 9055
Gpr25 1 136259797 to 136260873 1076 - protein coding gene G protein-coupled receptor 25
Tssr13933 1 136260367 to 136260439 72 - TSS region transcription start site region 13933
Tssr13934 1 136260916 to 136260931 15 - TSS region transcription start site region 13934
Camsap2 1 136268123 to 136346104 77981 - protein coding gene calmodulin regulated spectrin-associated protein family, member 2
Tssr9056 1 136279979 to 136279983 4 + TSS region transcription start site region 9056
Tssr13935 1 136280545 to 136280562 17 - TSS region transcription start site region 13935
Tssr13936 1 136280583 to 136280601 18 - TSS region transcription start site region 13936
D1Mit197 1 136335221 to 136335352 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 197
Tssr9057 1 136345116 to 136345120 4 + TSS region transcription start site region 9057
Cpgi811 1 136345174 to 136346715 1541 CpG island CpG island 811
Tssr13937 1 136345781 to 136345810 29 - TSS region transcription start site region 13937
Tssr13938 1 136345967 to 136345983 16 - TSS region transcription start site region 13938
Tssr13939 1 136346074 to 136346145 71 - TSS region transcription start site region 13939
Tssr9058 1 136364973 to 136364985 12 + TSS region transcription start site region 9058
Tssr9059 1 136364989 to 136365021 32 + TSS region transcription start site region 9059
Tssr9060 1 136365057 to 136365063 6 + TSS region transcription start site region 9060
9230116N13Rik 1 136411916 to 136415519 3603 - lncRNA gene RIKEN cDNA 9230116N13 gene
Cpgi812 1 136414942 to 136415766 824 CpG island CpG island 812
Tssr13940 1 136414957 to 136414980 23 - TSS region transcription start site region 13940
Tssr9061 1 136415267 to 136415278 11 + TSS region transcription start site region 9061
Ddx59 1 136415271 to 136440158 24887 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
Tssr9062 1 136415289 to 136415337 48 + TSS region transcription start site region 9062
Tssr9063 1 136415339 to 136415353 14 + TSS region transcription start site region 9063
Tssr13941 1 136415508 to 136415530 22 - TSS region transcription start site region 13941
Cpgi813 1 136466042 to 136466784 742 CpG island CpG island 813
Tssr9064 1 136466336 to 136466378 42 + TSS region transcription start site region 9064
Kif14 1 136466343 to 136531511 65168 + protein coding gene kinesin family member 14
Tssr9065 1 136466383 to 136466405 22 + TSS region transcription start site region 9065
Gm29486 1 136507409 to 136507780 371 + pseudogene predicted gene 29486
Gm29485 1 136523884 to 136524165 281 + pseudogene predicted gene 29485
Gm37799 1 136541605 to 136555873 14268 + lincRNA gene predicted gene, 37799
Tssr9066 1 136566675 to 136566687 12 + TSS region transcription start site region 9066
Tssr9067 1 136569908 to 136569917 9 + TSS region transcription start site region 9067
Tssr9068 1 136570601 to 136570610 9 + TSS region transcription start site region 9068
Tssr9069 1 136570613 to 136570624 11 + TSS region transcription start site region 9069
Tssr9070 1 136570638 to 136570649 11 + TSS region transcription start site region 9070
Tssr9071 1 136574356 to 136574358 2 + TSS region transcription start site region 9071
Gm33994 1 136576938 to 136579477 2539 - lincRNA gene predicted gene, 33994
Tssr9072 1 136579640 to 136579651 11 + TSS region transcription start site region 9072
Tssr9073 1 136579666 to 136579673 7 + TSS region transcription start site region 9073
Tssr13942 1 136580529 to 136580547 18 - TSS region transcription start site region 13942
Tssr13943 1 136580554 to 136580562 8 - TSS region transcription start site region 13943
Tssr13944 1 136580581 to 136580589 8 - TSS region transcription start site region 13944
4933409D19Rik 1 136603033 to 136605468 2435 - lincRNA gene RIKEN cDNA 4933409D19 gene
Cpgi814 1 136605459 to 136605643 184 CpG island CpG island 814
Tssr13945 1 136608482 to 136608487 5 - TSS region transcription start site region 13945
Platr23 1 136622098 to 136624650 2552 - lincRNA gene pluripotency associated transcript 23
Cpgi815 1 136624457 to 136626112 1655 CpG island CpG island 815
Zfp281 1 136624901 to 136630053 5152 + protein coding gene zinc finger protein 281
Tssr9074 1 136624933 to 136624949 16 + TSS region transcription start site region 9074
Tssr9075 1 136624951 to 136624995 44 + TSS region transcription start site region 9075
Tssr9076 1 136624997 to 136625020 23 + TSS region transcription start site region 9076
Tssr9077 1 136626094 to 136626139 45 + TSS region transcription start site region 9077
Tssr9078 1 136627799 to 136627821 22 + TSS region transcription start site region 9078
Tssr9079 1 136638578 to 136638584 6 + TSS region transcription start site region 9079
Gm34056 1 136650442 to 136662730 12288 - lncRNA gene predicted gene, 34056
Gm41958 1 136662099 to 136682575 20476 + protein coding gene predicted gene, 41958
Tssr9080 1 136662146 to 136662159 13 + TSS region transcription start site region 9080
Cpgi816 1 136670504 to 136670733 229 CpG island CpG island 816
Tssr9081 1 136674690 to 136674699 9 + TSS region transcription start site region 9081
Tssr13946 1 136674768 to 136674830 62 - TSS region transcription start site region 13946
Tssr9082 1 136676413 to 136676443 30 + TSS region transcription start site region 9082
Tssr9083 1 136677162 to 136677214 52 + TSS region transcription start site region 9083
Tssr9084 1 136677244 to 136677249 5 + TSS region transcription start site region 9084
Tssr9085 1 136678140 to 136678154 14 + TSS region transcription start site region 9085
Tssr9086 1 136678158 to 136678181 23 + TSS region transcription start site region 9086
Tssr9087 1 136680456 to 136680476 20 + TSS region transcription start site region 9087
Tssr9088 1 136683375 to 136683410 35 + TSS region transcription start site region 9088
Gm19705 1 136683396 to 136690805 7409 + lincRNA gene predicted gene, 19705
Tssr9089 1 136683661 to 136683670 9 + TSS region transcription start site region 9089
Tssr231 1 136685228 to 136685252 24 - TSS region transcription start site region 231
Tssr9090 1 136690530 to 136690534 4 + TSS region transcription start site region 9090
Tssr9091 1 136692852 to 136692859 7 + TSS region transcription start site region 9091
Tssr9092 1 136696198 to 136696213 15 + TSS region transcription start site region 9092
Platr22 1 136696211 to 136725728 29517 + lincRNA gene pluripotency associated transcript 22
Tssr9093 1 136696260 to 136696271 11 + TSS region transcription start site region 9093
Tssr9094 1 136696402 to 136696414 12 + TSS region transcription start site region 9094
Gm24086 1 136697374 to 136697471 97 + snRNA gene predicted gene, 24086
Tssr9095 1 136699650 to 136699659 9 + TSS region transcription start site region 9095
D1Mit538 1 136757191 to 136757339 148 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 538
Gm22132 1 136757510 to 136757609 99 - miRNA gene predicted gene, 22132
Cpgi817 1 136781709 to 136782031 322 CpG island CpG island 817
Cpgi818 1 136789088 to 136789682 594 CpG island CpG island 818
Gm8762 1 136789182 to 136789520 338 - pseudogene predicted gene 8762
Tssr13947 1 136789572 to 136789573 1 - TSS region transcription start site region 13947
Gm29718 1 136793034 to 136793510 476 + pseudogene predicted gene, 29718
Gm17781 1 136798311 to 136798959 648 - pseudogene predicted gene, 17781
Nr5a2 1 136842571 to 136960448 117877 - protein coding gene nuclear receptor subfamily 5, group A, member 2
D1Ertd811e 1 136921330 to 136921570 240 DNA segment DNA segment, Chr 1, ERATO Doi 811, expressed
Tssr13948 1 136929299 to 136929310 11 - TSS region transcription start site region 13948
Tssr13949 1 136942303 to 136942305 2 - TSS region transcription start site region 13949
Tssr13950 1 136946199 to 136946205 6 - TSS region transcription start site region 13950
Cpgi819 1 136947195 to 136947451 256 CpG island CpG island 819
Cpgi820 1 136948567 to 136949413 846 CpG island CpG island 820
Tssr13951 1 136949171 to 136949189 18 - TSS region transcription start site region 13951
Tssr13952 1 136949432 to 136949461 29 - TSS region transcription start site region 13952
Tssr13953 1 136949470 to 136949497 27 - TSS region transcription start site region 13953
Tssr13954 1 136949502 to 136949526 24 - TSS region transcription start site region 13954
Tssr13955 1 136949540 to 136949552 12 - TSS region transcription start site region 13955
Tssr13956 1 136949579 to 136949584 5 - TSS region transcription start site region 13956
Tssr13957 1 136949591 to 136949599 8 - TSS region transcription start site region 13957
Tssr9096 1 136949697 to 136949701 4 + TSS region transcription start site region 9096
Cpgi821 1 136952170 to 136953248 1078 CpG island CpG island 821
Tssr13958 1 136953526 to 136953571 45 - TSS region transcription start site region 13958
Tssr13959 1 136953600 to 136953605 5 - TSS region transcription start site region 13959
Tssr13960 1 136960471 to 136960494 23 - TSS region transcription start site region 13960
Tssr13961 1 136960499 to 136960528 29 - TSS region transcription start site region 13961
Tssr13962 1 136960535 to 136960553 18 - TSS region transcription start site region 13962
Rnu7-ps3 1 136990207 to 136990270 63 - pseudogene U7 small nuclear RNA, pseudogene 3
Gm23763 1 136990211 to 136990270 59 - snRNA gene predicted gene, 23763
Gm25609 1 137215544 to 137215647 103 - snRNA gene predicted gene, 25609
Gm19215 1 137250473 to 137251068 595 - pseudogene predicted gene, 19215
Gm37057 1 137252142 to 137254057 1915 + unclassified gene predicted gene, 37057
Tssr9097 1 137289772 to 137289777 5 + TSS region transcription start site region 9097
1700006P03Rik 1 137325434 to 137325842 408 - unclassified gene RIKEN cDNA 1700006P03 gene
Tssr13963 1 137325835 to 137325841 6 - TSS region transcription start site region 13963