Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:135829307-136139321

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lad1 1 135818598 to 135833341 14743 + protein coding gene ladinin
Tnnt2 1 135836354 to 135852260 15906 + protein coding gene troponin T2, cardiac
Tssr9005 1 135836380 to 135836396 16 + TSS region transcription start site region 9005
Tssr9006 1 135838410 to 135838423 13 + TSS region transcription start site region 9006
Tssr9007 1 135838907 to 135838911 4 + TSS region transcription start site region 9007
Tssr9008 1 135840671 to 135840696 25 + TSS region transcription start site region 9008
Tssr9009 1 135840857 to 135840878 21 + TSS region transcription start site region 9009
Tssr13887 1 135840906 to 135840920 14 - TSS region transcription start site region 13887
Tssr13888 1 135843806 to 135843823 17 - TSS region transcription start site region 13888
Tssr9010 1 135845401 to 135845412 11 + TSS region transcription start site region 9010
Tssr13889 1 135845575 to 135845607 32 - TSS region transcription start site region 13889
Tssr9011 1 135845578 to 135845602 24 + TSS region transcription start site region 9011
Tssr9012 1 135845606 to 135845618 12 + TSS region transcription start site region 9012
Tssr9013 1 135845893 to 135845904 11 + TSS region transcription start site region 9013
Tssr9014 1 135846695 to 135846730 35 + TSS region transcription start site region 9014
Tssr9015 1 135847702 to 135847736 34 + TSS region transcription start site region 9015
Tssr225 1 135847737 to 135847740 3 + TSS region transcription start site region 225
Tssr13890 1 135847756 to 135847775 19 - TSS region transcription start site region 13890
Tssr9016 1 135847973 to 135847988 15 + TSS region transcription start site region 9016
Tssr9017 1 135847989 to 135848026 37 + TSS region transcription start site region 9017
Tssr226 1 135848006 to 135848010 4 - TSS region transcription start site region 226
Tssr13891 1 135848013 to 135848020 7 - TSS region transcription start site region 13891
Tssr9018 1 135848034 to 135848044 10 + TSS region transcription start site region 9018
Tssr13892 1 135848053 to 135848087 34 - TSS region transcription start site region 13892
Tssr9019 1 135848059 to 135848077 18 + TSS region transcription start site region 9019
Tssr13893 1 135848091 to 135848104 13 - TSS region transcription start site region 13893
Tssr9020 1 135848805 to 135848848 43 + TSS region transcription start site region 9020
Tssr13894 1 135848848 to 135848853 5 - TSS region transcription start site region 13894
Tssr9021 1 135848857 to 135848868 11 + TSS region transcription start site region 9021
Tssr13895 1 135848858 to 135848897 39 - TSS region transcription start site region 13895
Tssr9022 1 135849343 to 135849356 13 + TSS region transcription start site region 9022
Tssr9023 1 135849362 to 135849430 68 + TSS region transcription start site region 9023
Tssr13896 1 135849378 to 135849424 46 - TSS region transcription start site region 13896
Tssr227 1 135849440 to 135849445 5 - TSS region transcription start site region 227
Tssr13897 1 135849449 to 135849452 3 - TSS region transcription start site region 13897
Tssr9024 1 135849456 to 135849466 10 + TSS region transcription start site region 9024
Tssr9025 1 135849745 to 135849756 11 + TSS region transcription start site region 9025
Tssr9026 1 135849947 to 135849954 7 + TSS region transcription start site region 9026
Tssr9027 1 135850057 to 135850072 15 + TSS region transcription start site region 9027
Tssr9028 1 135850097 to 135850110 13 + TSS region transcription start site region 9028
Tssr9029 1 135850677 to 135850686 9 + TSS region transcription start site region 9029
Tssr9030 1 135850712 to 135850736 24 + TSS region transcription start site region 9030
Tssr13898 1 135850737 to 135850787 50 - TSS region transcription start site region 13898
Tssr9031 1 135850771 to 135850791 20 + TSS region transcription start site region 9031
Tssr13899 1 135850805 to 135850808 3 - TSS region transcription start site region 13899
Tssr13900 1 135850815 to 135850825 10 - TSS region transcription start site region 13900
Tssr9032 1 135851354 to 135851378 24 + TSS region transcription start site region 9032
Tssr13901 1 135851376 to 135851390 14 - TSS region transcription start site region 13901
Tssr9033 1 135852199 to 135852233 34 + TSS region transcription start site region 9033
Tssr13902 1 135852237 to 135852261 24 - TSS region transcription start site region 13902
Gm28883 1 135869782 to 135870150 368 + pseudogene predicted gene 28883
Pkp1 1 135871395 to 135919207 47812 - protein coding gene plakophilin 1
Tssr13903 1 135871887 to 135871889 2 - TSS region transcription start site region 13903
Gm36938 1 135896394 to 135899089 2695 - unclassified gene predicted gene, 36938
Cpgi800 1 135918520 to 135919536 1016 CpG island CpG island 800
Tssr13904 1 135919124 to 135919135 11 - TSS region transcription start site region 13904
Tssr13905 1 135919164 to 135919175 11 - TSS region transcription start site region 13905
Tssr13906 1 135919199 to 135919212 13 - TSS region transcription start site region 13906
Tssr13907 1 135919294 to 135919307 13 - TSS region transcription start site region 13907
Tssr13908 1 135919321 to 135919339 18 - TSS region transcription start site region 13908
Tssr13909 1 135919342 to 135919353 11 - TSS region transcription start site region 13909
Tssr13910 1 135919354 to 135919359 5 - TSS region transcription start site region 13910
Tssr228 1 135924362 to 135924366 4 + TSS region transcription start site region 228
Igfn1 1 135953578 to 136006342 52764 - protein coding gene immunoglobulin-like and fibronectin type III domain containing 1
Tssr13911 1 135984287 to 135984303 16 - TSS region transcription start site region 13911
Tssr13912 1 135984307 to 135984321 14 - TSS region transcription start site region 13912
D1Mit103 1 135985679 to 135985793 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 103
Cpgi801 1 136007428 to 136007896 468 CpG island CpG island 801
Tmem9 1 136008219 to 136035030 26811 + protein coding gene transmembrane protein 9
Tssr9034 1 136015326 to 136015331 5 + TSS region transcription start site region 9034
Cpgi802 1 136017969 to 136018325 356 CpG island CpG island 802
Tssr9035 1 136018000 to 136018042 42 + TSS region transcription start site region 9035
Tssr9036 1 136018063 to 136018068 5 + TSS region transcription start site region 9036
Tssr13913 1 136040894 to 136040927 33 - TSS region transcription start site region 13913
Cpgi803 1 136050498 to 136051763 1265 CpG island CpG island 803
Ascl5 1 136050804 to 136051370 566 + protein coding gene achaete-scute family bHLH transcription factor 5
Tssr9037 1 136052754 to 136052761 7 + TSS region transcription start site region 9037
Tssr9038 1 136052771 to 136052796 25 + TSS region transcription start site region 9038
Tssr9039 1 136052804 to 136052826 22 + TSS region transcription start site region 9039
Cacna1s 1 136052805 to 136119822 67017 + protein coding gene calcium channel, voltage-dependent, L type, alpha 1S subunit
Tssr9040 1 136052946 to 136052958 12 + TSS region transcription start site region 9040
Gm37014 1 136057181 to 136059433 2252 + unclassified gene predicted gene, 37014
Cpgi804 1 136105292 to 136105926 634 CpG island CpG island 804
Gm37759 1 136116577 to 136119822 3245 - antisense lncRNA gene predicted gene, 37759
Gm15850 1 136127719 to 136131183 3464 - lncRNA gene predicted gene 15850
Cpgi805 1 136131117 to 136132267 1150 CpG island CpG island 805
Tssr13914 1 136131175 to 136131185 10 - TSS region transcription start site region 13914
Tssr9041 1 136131363 to 136131381 18 + TSS region transcription start site region 9041
Tssr9042 1 136131382 to 136131404 22 + TSS region transcription start site region 9042
Kif21b 1 136131389 to 136177998 46609 + protein coding gene kinesin family member 21B
Tssr9043 1 136131411 to 136131441 30 + TSS region transcription start site region 9043
Tssr9044 1 136131443 to 136131494 51 + TSS region transcription start site region 9044
Tssr9045 1 136133036 to 136133039 3 + TSS region transcription start site region 9045
Tssr13915 1 136133045 to 136133068 23 - TSS region transcription start site region 13915
Tssr13916 1 136135108 to 136135124 16 - TSS region transcription start site region 13916
Tssr13917 1 136135156 to 136135169 13 - TSS region transcription start site region 13917
Tssr13918 1 136135180 to 136135198 18 - TSS region transcription start site region 13918