Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:135441218-136091225

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nav1 1 135434580 to 135607295 172715 - protein coding gene neuron navigator 1
Tssr13859 1 135441354 to 135441376 22 - TSS region transcription start site region 13859
Tssr13860 1 135441479 to 135441495 16 - TSS region transcription start site region 13860
Mir1231 1 135454603 to 135454683 80 - miRNA gene microRNA 1231
Tssr13861 1 135470703 to 135470720 17 - TSS region transcription start site region 13861
Tssr13862 1 135470762 to 135470780 18 - TSS region transcription start site region 13862
Tssr13863 1 135479955 to 135479969 14 - TSS region transcription start site region 13863
2610012C04Rik 1 135480392 to 135481414 1022 - unclassified gene RIKEN cDNA 2610012C04 gene
Tssr13864 1 135495524 to 135495527 3 - TSS region transcription start site region 13864
Cpgi792 1 135510151 to 135511031 880 CpG island CpG island 792
Tssr13865 1 135510375 to 135510388 13 - TSS region transcription start site region 13865
Tssr13866 1 135510393 to 135510407 14 - TSS region transcription start site region 13866
Gm32940 1 135511866 to 135532367 20501 + lncRNA gene predicted gene, 32940
Gm37333 1 135523088 to 135525338 2250 - unclassified gene predicted gene, 37333
Tssr13867 1 135564552 to 135564557 5 - TSS region transcription start site region 13867
Cpgi793 1 135584577 to 135585946 1369 CpG island CpG island 793
Gm4793 1 135584773 to 135599948 15175 + antisense lncRNA gene predicted gene 4793
Tssr13868 1 135585281 to 135585292 11 - TSS region transcription start site region 13868
Tssr13869 1 135585308 to 135585313 5 - TSS region transcription start site region 13869
Tssr13870 1 135585314 to 135585364 50 - TSS region transcription start site region 13870
Tssr13871 1 135585367 to 135585380 13 - TSS region transcription start site region 13871
Tssr13872 1 135585488 to 135585516 28 - TSS region transcription start site region 13872
Tssr13873 1 135585517 to 135585546 29 - TSS region transcription start site region 13873
Tssr13874 1 135585708 to 135585719 11 - TSS region transcription start site region 13874
Tssr13875 1 135585731 to 135585817 86 - TSS region transcription start site region 13875
Tssr13876 1 135603216 to 135603223 7 - TSS region transcription start site region 13876
Tssr13877 1 135603243 to 135603261 18 - TSS region transcription start site region 13877
Gm38399 1 135606447 to 135688105 81658 - lincRNA gene predicted gene, 38399
Tssr13878 1 135607548 to 135607561 13 - TSS region transcription start site region 13878
Tssr13879 1 135631219 to 135631224 5 - TSS region transcription start site region 13879
Tssr8961 1 135631749 to 135631773 24 + TSS region transcription start site region 8961
Tssr13880 1 135634040 to 135634051 11 - TSS region transcription start site region 13880
Tssr13881 1 135660264 to 135660277 13 - TSS region transcription start site region 13881
Tssr8962 1 135673718 to 135673738 20 + TSS region transcription start site region 8962
Tssr13882 1 135679234 to 135679264 30 - TSS region transcription start site region 13882
Tssr13883 1 135685337 to 135685372 35 - TSS region transcription start site region 13883
Tssr8963 1 135686906 to 135686929 23 + TSS region transcription start site region 8963
Tssr8964 1 135687074 to 135687088 14 + TSS region transcription start site region 8964
Tssr8965 1 135687106 to 135687117 11 + TSS region transcription start site region 8965
Cpgi794 1 135687322 to 135688700 1378 CpG island CpG island 794
D1Mit498 1 135687493 to 135687641 148 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 498
Popoa 1 135687641 to 82665468 -53022173 QTL premature ovulation and primary oocyte arrest
Tssr13884 1 135688094 to 135688149 55 - TSS region transcription start site region 13884
Gm32835 1 135688306 to 135691947 3641 + lncRNA gene predicted gene, 32835
Tssr13885 1 135688818 to 135688852 34 - TSS region transcription start site region 13885
Cpgi795 1 135698988 to 135699592 604 CpG island CpG island 795
Tssr8966 1 135711372 to 135711395 23 + TSS region transcription start site region 8966
Tssr8967 1 135719795 to 135719815 20 + TSS region transcription start site region 8967
Cpgi796 1 135729017 to 135729514 497 CpG island CpG island 796
Csrp1 1 135729197 to 135752229 23032 + protein coding gene cysteine and glycine-rich protein 1
Tssr8968 1 135729213 to 135729234 21 + TSS region transcription start site region 8968
Tssr8969 1 135739474 to 135739482 8 + TSS region transcription start site region 8969
Tssr8970 1 135740715 to 135740719 4 + TSS region transcription start site region 8970
Tssr222 1 135746770 to 135746798 28 + TSS region transcription start site region 222
Tssr8971 1 135750598 to 135750615 17 + TSS region transcription start site region 8971
Tssr8972 1 135751091 to 135751107 16 + TSS region transcription start site region 8972
Tssr8973 1 135751170 to 135751210 40 + TSS region transcription start site region 8973
Cpgi797 1 135765539 to 135766978 1439 CpG island CpG island 797
Tssr223 1 135766070 to 135766079 9 + TSS region transcription start site region 223
Tssr8974 1 135766085 to 135766175 90 + TSS region transcription start site region 8974
Phlda3 1 135766119 to 135769136 3017 + protein coding gene pleckstrin homology like domain, family A, member 3
Tssr224 1 135766189 to 135766201 12 + TSS region transcription start site region 224
Tssr8975 1 135766207 to 135766208 1 + TSS region transcription start site region 8975
Tssr8976 1 135766218 to 135766225 7 + TSS region transcription start site region 8976
Tssr8977 1 135766237 to 135766240 3 + TSS region transcription start site region 8977
Tssr8978 1 135766241 to 135766257 16 + TSS region transcription start site region 8978
Tssr8979 1 135767809 to 135767830 21 + TSS region transcription start site region 8979
Tnni1 1 135783033 to 135810989 27956 + protein coding gene troponin I, skeletal, slow 1
Tssr8980 1 135783133 to 135783143 10 + TSS region transcription start site region 8980
Cpgi798 1 135793729 to 135794015 286 CpG island CpG island 798
Tssr8981 1 135799433 to 135799480 47 + TSS region transcription start site region 8981
Tssr8982 1 135799490 to 135799499 9 + TSS region transcription start site region 8982
Tssr8983 1 135799962 to 135799969 7 + TSS region transcription start site region 8983
Tssr8984 1 135800828 to 135800839 11 + TSS region transcription start site region 8984
Tssr8985 1 135801570 to 135801580 10 + TSS region transcription start site region 8985
Tssr8986 1 135801699 to 135801710 11 + TSS region transcription start site region 8986
Tssr8987 1 135810877 to 135810886 9 + TSS region transcription start site region 8987
Tssr8988 1 135810888 to 135810893 5 + TSS region transcription start site region 8988
Tssr8989 1 135810894 to 135810933 39 + TSS region transcription start site region 8989
Tssr13886 1 135813143 to 135813180 37 - TSS region transcription start site region 13886
Cpgi799 1 135818148 to 135819383 1235 CpG island CpG island 799
Tssr8990 1 135818593 to 135818602 9 + TSS region transcription start site region 8990
Lad1 1 135818598 to 135833341 14743 + protein coding gene ladinin
Tssr8991 1 135818661 to 135818672 11 + TSS region transcription start site region 8991
Tssr8992 1 135818686 to 135818711 25 + TSS region transcription start site region 8992
Tssr8993 1 135818712 to 135818723 11 + TSS region transcription start site region 8993
Tssr8994 1 135818725 to 135818739 14 + TSS region transcription start site region 8994
Tssr8995 1 135818766 to 135818773 7 + TSS region transcription start site region 8995
Tssr8996 1 135818810 to 135818834 24 + TSS region transcription start site region 8996
Tssr8997 1 135818842 to 135818849 7 + TSS region transcription start site region 8997
Tssr8998 1 135818858 to 135818859 1 + TSS region transcription start site region 8998
Tssr8999 1 135818871 to 135818900 29 + TSS region transcription start site region 8999
Tssr9000 1 135818904 to 135818981 77 + TSS region transcription start site region 9000
Tssr9001 1 135825040 to 135825063 23 + TSS region transcription start site region 9001
Tssr9002 1 135826891 to 135826917 26 + TSS region transcription start site region 9002
Tssr9003 1 135827272 to 135827303 31 + TSS region transcription start site region 9003
Tssr9004 1 135827949 to 135827961 12 + TSS region transcription start site region 9004
Tnnt2 1 135836354 to 135852260 15906 + protein coding gene troponin T2, cardiac
Tssr9005 1 135836380 to 135836396 16 + TSS region transcription start site region 9005
Tssr9006 1 135838410 to 135838423 13 + TSS region transcription start site region 9006
Tssr9007 1 135838907 to 135838911 4 + TSS region transcription start site region 9007
Tssr9008 1 135840671 to 135840696 25 + TSS region transcription start site region 9008
Tssr9009 1 135840857 to 135840878 21 + TSS region transcription start site region 9009
Tssr13887 1 135840906 to 135840920 14 - TSS region transcription start site region 13887
Tssr13888 1 135843806 to 135843823 17 - TSS region transcription start site region 13888
Tssr9010 1 135845401 to 135845412 11 + TSS region transcription start site region 9010
Tssr13889 1 135845575 to 135845607 32 - TSS region transcription start site region 13889
Tssr9011 1 135845578 to 135845602 24 + TSS region transcription start site region 9011
Tssr9012 1 135845606 to 135845618 12 + TSS region transcription start site region 9012
Tssr9013 1 135845893 to 135845904 11 + TSS region transcription start site region 9013
Tssr9014 1 135846695 to 135846730 35 + TSS region transcription start site region 9014
Tssr9015 1 135847702 to 135847736 34 + TSS region transcription start site region 9015
Tssr225 1 135847737 to 135847740 3 + TSS region transcription start site region 225
Tssr13890 1 135847756 to 135847775 19 - TSS region transcription start site region 13890
Tssr9016 1 135847973 to 135847988 15 + TSS region transcription start site region 9016
Tssr9017 1 135847989 to 135848026 37 + TSS region transcription start site region 9017
Tssr226 1 135848006 to 135848010 4 - TSS region transcription start site region 226
Tssr13891 1 135848013 to 135848020 7 - TSS region transcription start site region 13891
Tssr9018 1 135848034 to 135848044 10 + TSS region transcription start site region 9018
Tssr13892 1 135848053 to 135848087 34 - TSS region transcription start site region 13892
Tssr9019 1 135848059 to 135848077 18 + TSS region transcription start site region 9019
Tssr13893 1 135848091 to 135848104 13 - TSS region transcription start site region 13893
Tssr9020 1 135848805 to 135848848 43 + TSS region transcription start site region 9020
Tssr13894 1 135848848 to 135848853 5 - TSS region transcription start site region 13894
Tssr9021 1 135848857 to 135848868 11 + TSS region transcription start site region 9021
Tssr13895 1 135848858 to 135848897 39 - TSS region transcription start site region 13895
Tssr9022 1 135849343 to 135849356 13 + TSS region transcription start site region 9022
Tssr9023 1 135849362 to 135849430 68 + TSS region transcription start site region 9023
Tssr13896 1 135849378 to 135849424 46 - TSS region transcription start site region 13896
Tssr227 1 135849440 to 135849445 5 - TSS region transcription start site region 227
Tssr13897 1 135849449 to 135849452 3 - TSS region transcription start site region 13897
Tssr9024 1 135849456 to 135849466 10 + TSS region transcription start site region 9024
Tssr9025 1 135849745 to 135849756 11 + TSS region transcription start site region 9025
Tssr9026 1 135849947 to 135849954 7 + TSS region transcription start site region 9026
Tssr9027 1 135850057 to 135850072 15 + TSS region transcription start site region 9027
Tssr9028 1 135850097 to 135850110 13 + TSS region transcription start site region 9028
Tssr9029 1 135850677 to 135850686 9 + TSS region transcription start site region 9029
Tssr9030 1 135850712 to 135850736 24 + TSS region transcription start site region 9030
Tssr13898 1 135850737 to 135850787 50 - TSS region transcription start site region 13898
Tssr9031 1 135850771 to 135850791 20 + TSS region transcription start site region 9031
Tssr13899 1 135850805 to 135850808 3 - TSS region transcription start site region 13899
Tssr13900 1 135850815 to 135850825 10 - TSS region transcription start site region 13900
Tssr9032 1 135851354 to 135851378 24 + TSS region transcription start site region 9032
Tssr13901 1 135851376 to 135851390 14 - TSS region transcription start site region 13901
Tssr9033 1 135852199 to 135852233 34 + TSS region transcription start site region 9033
Tssr13902 1 135852237 to 135852261 24 - TSS region transcription start site region 13902
Gm28883 1 135869782 to 135870150 368 + pseudogene predicted gene 28883
Pkp1 1 135871395 to 135919207 47812 - protein coding gene plakophilin 1
Tssr13903 1 135871887 to 135871889 2 - TSS region transcription start site region 13903
Gm36938 1 135896394 to 135899089 2695 - unclassified gene predicted gene, 36938
Cpgi800 1 135918520 to 135919536 1016 CpG island CpG island 800
Tssr13904 1 135919124 to 135919135 11 - TSS region transcription start site region 13904
Tssr13905 1 135919164 to 135919175 11 - TSS region transcription start site region 13905
Tssr13906 1 135919199 to 135919212 13 - TSS region transcription start site region 13906
Tssr13907 1 135919294 to 135919307 13 - TSS region transcription start site region 13907
Tssr13908 1 135919321 to 135919339 18 - TSS region transcription start site region 13908
Tssr13909 1 135919342 to 135919353 11 - TSS region transcription start site region 13909
Tssr13910 1 135919354 to 135919359 5 - TSS region transcription start site region 13910
Tssr228 1 135924362 to 135924366 4 + TSS region transcription start site region 228
Igfn1 1 135953578 to 136006342 52764 - protein coding gene immunoglobulin-like and fibronectin type III domain containing 1
Tssr13911 1 135984287 to 135984303 16 - TSS region transcription start site region 13911
Tssr13912 1 135984307 to 135984321 14 - TSS region transcription start site region 13912
D1Mit103 1 135985679 to 135985793 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 103
Cpgi801 1 136007428 to 136007896 468 CpG island CpG island 801
Tmem9 1 136008219 to 136035030 26811 + protein coding gene transmembrane protein 9
Tssr9034 1 136015326 to 136015331 5 + TSS region transcription start site region 9034
Cpgi802 1 136017969 to 136018325 356 CpG island CpG island 802
Tssr9035 1 136018000 to 136018042 42 + TSS region transcription start site region 9035
Tssr9036 1 136018063 to 136018068 5 + TSS region transcription start site region 9036
Tssr13913 1 136040894 to 136040927 33 - TSS region transcription start site region 13913
Cpgi803 1 136050498 to 136051763 1265 CpG island CpG island 803
Ascl5 1 136050804 to 136051370 566 + protein coding gene achaete-scute family bHLH transcription factor 5
Tssr9037 1 136052754 to 136052761 7 + TSS region transcription start site region 9037
Tssr9038 1 136052771 to 136052796 25 + TSS region transcription start site region 9038
Tssr9039 1 136052804 to 136052826 22 + TSS region transcription start site region 9039
Cacna1s 1 136052805 to 136119822 67017 + protein coding gene calcium channel, voltage-dependent, L type, alpha 1S subunit
Tssr9040 1 136052946 to 136052958 12 + TSS region transcription start site region 9040
Gm37014 1 136057181 to 136059433 2252 + unclassified gene predicted gene, 37014