Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:135369577-135800946

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shisa4 1 135371057 to 135375237 4180 - protein coding gene shisa family member 4
Tssr13840 1 135371884 to 135371888 4 - TSS region transcription start site region 13840
Tssr13841 1 135372306 to 135372332 26 - TSS region transcription start site region 13841
Tssr13842 1 135373199 to 135373210 11 - TSS region transcription start site region 13842
Tssr13843 1 135373409 to 135373421 12 - TSS region transcription start site region 13843
Tssr13844 1 135373427 to 135373455 28 - TSS region transcription start site region 13844
Tssr13845 1 135373468 to 135373483 15 - TSS region transcription start site region 13845
Tssr13846 1 135373958 to 135373964 6 - TSS region transcription start site region 13846
Tssr13847 1 135374419 to 135374434 15 - TSS region transcription start site region 13847
Cpgi790 1 135374436 to 135375476 1040 CpG island CpG island 790
Tssr13848 1 135374919 to 135374933 14 - TSS region transcription start site region 13848
Tssr13849 1 135374936 to 135374946 10 - TSS region transcription start site region 13849
Tssr13850 1 135374955 to 135375098 143 - TSS region transcription start site region 13850
Tssr13851 1 135375099 to 135375110 11 - TSS region transcription start site region 13851
Tssr13852 1 135375223 to 135375228 5 - TSS region transcription start site region 13852
Tssr13853 1 135375233 to 135375245 12 - TSS region transcription start site region 13853
Tssr13854 1 135375250 to 135375264 14 - TSS region transcription start site region 13854
Tssr13855 1 135375268 to 135375277 9 - TSS region transcription start site region 13855
Tssr13856 1 135375282 to 135375285 3 - TSS region transcription start site region 13856
Ipo9 1 135382315 to 135430491 48176 - protein coding gene importin 9
Gm28277 1 135409622 to 135414186 4564 - sense intronic lncRNA gene predicted gene 28277
Cpgi791 1 135429715 to 135430870 1155 CpG island CpG island 791
Tssr13857 1 135430427 to 135430488 61 - TSS region transcription start site region 13857
Tssr13858 1 135430490 to 135430505 15 - TSS region transcription start site region 13858
Nav1 1 135434580 to 135607295 172715 - protein coding gene neuron navigator 1
Tssr13859 1 135441354 to 135441376 22 - TSS region transcription start site region 13859
Tssr13860 1 135441479 to 135441495 16 - TSS region transcription start site region 13860
Mir1231 1 135454603 to 135454683 80 - miRNA gene microRNA 1231
Tssr13861 1 135470703 to 135470720 17 - TSS region transcription start site region 13861
Tssr13862 1 135470762 to 135470780 18 - TSS region transcription start site region 13862
Tssr13863 1 135479955 to 135479969 14 - TSS region transcription start site region 13863
2610012C04Rik 1 135480392 to 135481414 1022 - unclassified gene RIKEN cDNA 2610012C04 gene
Tssr13864 1 135495524 to 135495527 3 - TSS region transcription start site region 13864
Cpgi792 1 135510151 to 135511031 880 CpG island CpG island 792
Tssr13865 1 135510375 to 135510388 13 - TSS region transcription start site region 13865
Tssr13866 1 135510393 to 135510407 14 - TSS region transcription start site region 13866
Gm32940 1 135511866 to 135532367 20501 + lncRNA gene predicted gene, 32940
Gm37333 1 135523088 to 135525338 2250 - unclassified gene predicted gene, 37333
Tssr13867 1 135564552 to 135564557 5 - TSS region transcription start site region 13867
Cpgi793 1 135584577 to 135585946 1369 CpG island CpG island 793
Gm4793 1 135584773 to 135599948 15175 + antisense lncRNA gene predicted gene 4793
Tssr13868 1 135585281 to 135585292 11 - TSS region transcription start site region 13868
Tssr13869 1 135585308 to 135585313 5 - TSS region transcription start site region 13869
Tssr13870 1 135585314 to 135585364 50 - TSS region transcription start site region 13870
Tssr13871 1 135585367 to 135585380 13 - TSS region transcription start site region 13871
Tssr13872 1 135585488 to 135585516 28 - TSS region transcription start site region 13872
Tssr13873 1 135585517 to 135585546 29 - TSS region transcription start site region 13873
Tssr13874 1 135585708 to 135585719 11 - TSS region transcription start site region 13874
Tssr13875 1 135585731 to 135585817 86 - TSS region transcription start site region 13875
Tssr13876 1 135603216 to 135603223 7 - TSS region transcription start site region 13876
Tssr13877 1 135603243 to 135603261 18 - TSS region transcription start site region 13877
Gm38399 1 135606447 to 135688105 81658 - lincRNA gene predicted gene, 38399
Tssr13878 1 135607548 to 135607561 13 - TSS region transcription start site region 13878
Tssr13879 1 135631219 to 135631224 5 - TSS region transcription start site region 13879
Tssr8961 1 135631749 to 135631773 24 + TSS region transcription start site region 8961
Tssr13880 1 135634040 to 135634051 11 - TSS region transcription start site region 13880
Tssr13881 1 135660264 to 135660277 13 - TSS region transcription start site region 13881
Tssr8962 1 135673718 to 135673738 20 + TSS region transcription start site region 8962
Tssr13882 1 135679234 to 135679264 30 - TSS region transcription start site region 13882
Tssr13883 1 135685337 to 135685372 35 - TSS region transcription start site region 13883
Tssr8963 1 135686906 to 135686929 23 + TSS region transcription start site region 8963
Tssr8964 1 135687074 to 135687088 14 + TSS region transcription start site region 8964
Tssr8965 1 135687106 to 135687117 11 + TSS region transcription start site region 8965
Cpgi794 1 135687322 to 135688700 1378 CpG island CpG island 794
D1Mit498 1 135687493 to 135687641 148 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 498
Popoa 1 135687641 to 82665468 -53022173 QTL premature ovulation and primary oocyte arrest
Tssr13884 1 135688094 to 135688149 55 - TSS region transcription start site region 13884
Gm32835 1 135688306 to 135691947 3641 + lncRNA gene predicted gene, 32835
Tssr13885 1 135688818 to 135688852 34 - TSS region transcription start site region 13885
Cpgi795 1 135698988 to 135699592 604 CpG island CpG island 795
Tssr8966 1 135711372 to 135711395 23 + TSS region transcription start site region 8966
Tssr8967 1 135719795 to 135719815 20 + TSS region transcription start site region 8967
Cpgi796 1 135729017 to 135729514 497 CpG island CpG island 796
Csrp1 1 135729197 to 135752229 23032 + protein coding gene cysteine and glycine-rich protein 1
Tssr8968 1 135729213 to 135729234 21 + TSS region transcription start site region 8968
Tssr8969 1 135739474 to 135739482 8 + TSS region transcription start site region 8969
Tssr8970 1 135740715 to 135740719 4 + TSS region transcription start site region 8970
Tssr222 1 135746770 to 135746798 28 + TSS region transcription start site region 222
Tssr8971 1 135750598 to 135750615 17 + TSS region transcription start site region 8971
Tssr8972 1 135751091 to 135751107 16 + TSS region transcription start site region 8972
Tssr8973 1 135751170 to 135751210 40 + TSS region transcription start site region 8973
Cpgi797 1 135765539 to 135766978 1439 CpG island CpG island 797
Tssr223 1 135766070 to 135766079 9 + TSS region transcription start site region 223
Tssr8974 1 135766085 to 135766175 90 + TSS region transcription start site region 8974
Phlda3 1 135766119 to 135769136 3017 + protein coding gene pleckstrin homology like domain, family A, member 3
Tssr224 1 135766189 to 135766201 12 + TSS region transcription start site region 224
Tssr8975 1 135766207 to 135766208 1 + TSS region transcription start site region 8975
Tssr8976 1 135766218 to 135766225 7 + TSS region transcription start site region 8976
Tssr8977 1 135766237 to 135766240 3 + TSS region transcription start site region 8977
Tssr8978 1 135766241 to 135766257 16 + TSS region transcription start site region 8978
Tssr8979 1 135767809 to 135767830 21 + TSS region transcription start site region 8979
Tnni1 1 135783033 to 135810989 27956 + protein coding gene troponin I, skeletal, slow 1
Tssr8980 1 135783133 to 135783143 10 + TSS region transcription start site region 8980
Cpgi798 1 135793729 to 135794015 286 CpG island CpG island 798
Tssr8981 1 135799433 to 135799480 47 + TSS region transcription start site region 8981
Tssr8982 1 135799490 to 135799499 9 + TSS region transcription start site region 8982
Tssr8983 1 135799962 to 135799969 7 + TSS region transcription start site region 8983
Tssr8984 1 135800828 to 135800839 11 + TSS region transcription start site region 8984