Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:13534869-16145156

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tram1 1 13564698 to 13589910 25212 - protein coding gene translocating chain-associating membrane protein 1
Tssr11000 1 13565232 to 13565274 42 - TSS region transcription start site region 11000
Tssr11001 1 13565939 to 13565957 18 - TSS region transcription start site region 11001
Tssr11002 1 13566097 to 13566178 81 - TSS region transcription start site region 11002
Tssr11003 1 13587825 to 13587830 5 - TSS region transcription start site region 11003
Tssr11004 1 13588975 to 13588977 2 - TSS region transcription start site region 11004
Cpgi43 1 13589083 to 13590328 1245 CpG island CpG island 43
Tssr11005 1 13589717 to 13589904 187 - TSS region transcription start site region 11005
Tssr5968 1 13593595 to 13593611 16 + TSS region transcription start site region 5968
Lactb2 1 13625898 to 13660605 34707 - protein coding gene lactamase, beta 2
Tssr11006 1 13626205 to 13626210 5 - TSS region transcription start site region 11006
Gm38319 1 13641483 to 13642748 1265 - unclassified gene predicted gene, 38319
Cpgi44 1 13660064 to 13660774 710 CpG island CpG island 44
Tssr11007 1 13660454 to 13660469 15 - TSS region transcription start site region 11007
Tssr11008 1 13660476 to 13660554 78 - TSS region transcription start site region 11008
Tssr11009 1 13660639 to 13660650 11 - TSS region transcription start site region 11009
Tssr11010 1 13660745 to 13660755 10 - TSS region transcription start site region 11010
Tssr5969 1 13668739 to 13668772 33 + TSS region transcription start site region 5969
Xkr9 1 13668771 to 13701723 32952 + protein coding gene X-linked Kx blood group related 9
Tssr5970 1 13668773 to 13668794 21 + TSS region transcription start site region 5970
Tssr5971 1 13668799 to 13668812 13 + TSS region transcription start site region 5971
Tssr5972 1 13669001 to 13669040 39 + TSS region transcription start site region 5972
Tssr11011 1 13669788 to 13669792 4 - TSS region transcription start site region 11011
Gm26273 1 13774334 to 13774464 130 - snoRNA gene predicted gene, 26273
Gm2452 1 13774628 to 13775938 1310 - pseudogene predicted gene 2452
Gm5523 1 13785883 to 13786879 996 - pseudogene predicted pseudogene 5523
Tssr11012 1 13827532 to 13827540 8 - TSS region transcription start site region 11012
Gm31195 1 13846500 to 13881933 35433 + lncRNA gene predicted gene, 31195
Tssr5973 1 13846590 to 13846618 28 + TSS region transcription start site region 5973
Gm36947 1 13846871 to 13849119 2248 - unclassified gene predicted gene, 36947
Tssr5974 1 13874369 to 13874377 8 + TSS region transcription start site region 5974
Tssr11013 1 13898467 to 13898470 3 - TSS region transcription start site region 11013
Gm19122 1 13916903 to 13917754 851 + pseudogene predicted gene, 19122
Gm25491 1 13932378 to 13932685 307 + unclassified non-coding RNA gene predicted gene, 25491
Gm39596 1 14042254 to 14141388 99134 + lncRNA gene predicted gene, 39596
Gm37400 1 14109215 to 14112819 3604 - unclassified gene predicted gene, 37400
Eya1 1 14168954 to 14310235 141281 - protein coding gene EYA transcriptional coactivator and phosphatase 1
Gm22616 1 14182578 to 14182677 99 + miRNA gene predicted gene, 22616
Tssr11014 1 14227913 to 14227917 4 - TSS region transcription start site region 11014
Gm37444 1 14255552 to 14255990 438 - unclassified gene predicted gene, 37444
D1Mit430 1 14281275 to 14281387 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 430
Tssr11015 1 14299706 to 14299714 8 - TSS region transcription start site region 11015
Tssr11016 1 14304542 to 14304550 8 - TSS region transcription start site region 11016
Tssr11017 1 14304594 to 14304609 15 - TSS region transcription start site region 11017
Tssr11018 1 14304616 to 14304683 67 - TSS region transcription start site region 11018
Tssr11019 1 14304701 to 14304716 15 - TSS region transcription start site region 11019
Cpgi45 1 14309667 to 14310160 493 CpG island CpG island 45
Tssr11020 1 14309811 to 14309814 3 - TSS region transcription start site region 11020
Tssr11021 1 14309861 to 14309879 18 - TSS region transcription start site region 11021
Tssr11022 1 14309938 to 14309947 9 - TSS region transcription start site region 11022
Tssr11023 1 14309984 to 14310006 22 - TSS region transcription start site region 11023
Tssr11024 1 14310042 to 14310074 32 - TSS region transcription start site region 11024
Tssr11025 1 14310109 to 14310124 15 - TSS region transcription start site region 11025
Tssr11026 1 14310198 to 14310218 20 - TSS region transcription start site region 11026
Tssr11027 1 14310219 to 14310242 23 - TSS region transcription start site region 11027
Cpgi46 1 14506401 to 14507250 849 CpG island CpG island 46
Gm7617 1 14550433 to 14551087 654 + pseudogene predicted gene 7617
Gm9947 1 14752937 to 14776931 23994 + antisense lncRNA gene predicted gene 9947
Msc 1 14753346 to 14755992 2646 - protein coding gene musculin
Cpgi47 1 14755015 to 14756249 1234 CpG island CpG island 47
Tssr11028 1 14755951 to 14755962 11 - TSS region transcription start site region 11028
Tssr11029 1 14755984 to 14755998 14 - TSS region transcription start site region 11029
Gm37412 1 14788645 to 14792965 4320 + unclassified gene predicted gene, 37412
Smt3h2-ps4 1 14839869 to 14840156 287 - pseudogene SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae)
Tssr5975 1 14864998 to 14865008 10 + TSS region transcription start site region 5975
Rpl5-ps1 1 14865072 to 14865965 893 + pseudogene ribosomal protein L5, pseudogene 1
Tssr5976 1 14869730 to 14869733 3 + TSS region transcription start site region 5976
Gm33500 1 14869758 to 14870038 280 + pseudogene predicted gene, 33500
Trpa1 1 14872648 to 14918862 46214 - protein coding gene transient receptor potential cation channel, subfamily A, member 1
Cpgi48 1 14918589 to 14918922 333 CpG island CpG island 48
Tssr11030 1 14931246 to 14931252 6 - TSS region transcription start site region 11030
Gm26345 1 15019040 to 15019159 119 - snoRNA gene predicted gene, 26345
Tssr5977 1 15067003 to 15067042 39 + TSS region transcription start site region 5977
Gm5048 1 15067032 to 15067558 526 + pseudogene predicted gene 5048
D1Mit297 1 15130066 to 15130262 196 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 297
Tssr5978 1 15201847 to 15201850 3 + TSS region transcription start site region 5978
Gm19917 1 15201959 to 15205406 3447 + pseudogene predicted gene, 19917
Gm10566 1 15268802 to 15269797 995 - pseudogene predicted gene 10566
Cpgi49 1 15286290 to 15287566 1276 CpG island CpG island 49
Tssr5979 1 15286900 to 15286963 63 + TSS region transcription start site region 5979
Tssr5980 1 15287002 to 15287017 15 + TSS region transcription start site region 5980
Kcnb2 1 15287254 to 15723750 436496 + protein coding gene potassium voltage gated channel, Shab-related subfamily, member 2
Gm38116 1 15364302 to 15365834 1532 + unclassified gene predicted gene, 38116
D1Mit1003 1 15369347 to 15369497 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1003
Tssr5981 1 15491437 to 15491439 2 + TSS region transcription start site region 5981
Tssr5982 1 15545476 to 15545480 4 + TSS region transcription start site region 5982
Gm37138 1 15556249 to 15558337 2088 + unclassified gene predicted gene, 37138
9430087D07Rik 1 15570582 to 15571241 659 unclassified gene RIKEN cDNA 9430087D07 gene
Cpgi50 1 15651115 to 15651377 262 CpG island CpG island 50
Gm25227 1 15685935 to 15686046 111 - snoRNA gene predicted gene, 25227
Gm25168 1 15757832 to 15757963 131 + snoRNA gene predicted gene, 25168
Gm6060 1 15760122 to 15760668 546 - pseudogene predicted gene 6060
Gm28669 1 15760761 to 15760860 99 + pseudogene predicted gene 28669
Tssr5983 1 15803204 to 15803236 32 + TSS region transcription start site region 5983
Tssr5984 1 15803238 to 15803249 11 + TSS region transcription start site region 5984
Tssr5985 1 15803254 to 15803264 10 + TSS region transcription start site region 5985
Tssr5986 1 15804357 to 15804367 10 + TSS region transcription start site region 5986
Tssr5987 1 15804368 to 15804373 5 + TSS region transcription start site region 5987
Tssr5988 1 15804374 to 15804382 8 + TSS region transcription start site region 5988
Cpgi51 1 15805476 to 15806371 895 CpG island CpG island 51
Tssr5989 1 15805623 to 15805632 9 + TSS region transcription start site region 5989
Tssr5990 1 15805639 to 15805675 36 + TSS region transcription start site region 5990
Terf1 1 15805646 to 15844052 38406 + protein coding gene telomeric repeat binding factor 1
D1Ertd705e 1 15849417 to 15849631 214 DNA segment DNA segment, Chr 1, ERATO Doi 705, expressed
Gm37509 1 15853331 to 15856499 3168 + unclassified gene predicted gene, 37509
Sbspon 1 15853862 to 15892722 38860 - protein coding gene somatomedin B and thrombospondin, type 1 domain containing
Gm23259 1 15879530 to 15879832 302 + unclassified non-coding RNA gene predicted gene, 23259
Cpgi52 1 15892304 to 15893041 737 CpG island CpG island 52
Tssr11031 1 15892657 to 15892729 72 - TSS region transcription start site region 11031
Gm31523 1 15905205 to 15907764 2559 + lncRNA gene predicted gene, 31523
Tssr5991 1 16051552 to 16051554 2 + TSS region transcription start site region 5991
Tssr5992 1 16053299 to 16053300 1 + TSS region transcription start site region 5992
Gm7634 1 16053335 to 16053887 552 + pseudogene predicted gene 7634
4930444P10Rik 1 16065979 to 16093325 27346 - protein coding gene RIKEN cDNA 4930444P10 gene
D1Mit1002 1 16077429 to 16077576 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1002
Cpgi53 1 16092809 to 16093494 685 CpG island CpG island 53
Tssr11032 1 16093286 to 16093341 55 - TSS region transcription start site region 11032
Rpl7 1 16101295 to 16104433 3138 - protein coding gene ribosomal protein L7
Cpgi54 1 16104101 to 16106523 2422 CpG island CpG island 54
Tssr11033 1 16104163 to 16104204 41 - TSS region transcription start site region 11033
Tssr11034 1 16104385 to 16104392 7 - TSS region transcription start site region 11034
Tssr11035 1 16104396 to 16104435 39 - TSS region transcription start site region 11035
Tssr5993 1 16105330 to 16105359 29 + TSS region transcription start site region 5993
Tssr5994 1 16105370 to 16105379 9 + TSS region transcription start site region 5994
Tssr5995 1 16105394 to 16105410 16 + TSS region transcription start site region 5995
Tssr5996 1 16105856 to 16105870 14 + TSS region transcription start site region 5996
Rdh10 1 16105882 to 16132550 26668 + protein coding gene retinol dehydrogenase 10 (all-trans)
Tssr5997 1 16106364 to 16106377 13 + TSS region transcription start site region 5997
Tssr5998 1 16111349 to 16111370 21 + TSS region transcription start site region 5998