Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:135147315-135665491

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi783 1 135146396 to 135147917 1521 CpG island CpG island 783
Arl8a 1 135146834 to 135156268 9434 + protein coding gene ADP-ribosylation factor-like 8A
Tssr8943 1 135147615 to 135147626 11 + TSS region transcription start site region 8943
Tssr8944 1 135147629 to 135147668 39 + TSS region transcription start site region 8944
Gm26280 1 135150666 to 135150766 100 - rRNA gene predicted gene, 26280
Tssr8945 1 135152800 to 135152836 36 + TSS region transcription start site region 8945
Gm15445 1 135152963 to 135153806 843 + antisense lncRNA gene predicted gene 15445
Tssr8946 1 135154401 to 135154451 50 + TSS region transcription start site region 8946
Tssr8947 1 135154624 to 135154640 16 + TSS region transcription start site region 8947
Tssr8948 1 135154641 to 135154686 45 + TSS region transcription start site region 8948
Tssr8949 1 135155292 to 135155304 12 + TSS region transcription start site region 8949
Tssr8950 1 135155310 to 135155335 25 + TSS region transcription start site region 8950
Tssr13826 1 135155320 to 135155340 20 - TSS region transcription start site region 13826
Tssr8951 1 135155375 to 135155430 55 + TSS region transcription start site region 8951
Tssr220 1 135155451 to 135155462 11 + TSS region transcription start site region 220
Tssr8952 1 135155466 to 135155481 15 + TSS region transcription start site region 8952
Tssr8953 1 135155565 to 135155577 12 + TSS region transcription start site region 8953
Gpr37l1 1 135160250 to 135167681 7431 - protein coding gene G protein-coupled receptor 37-like 1
Tssr13827 1 135160773 to 135160782 9 - TSS region transcription start site region 13827
Cpgi784 1 135161007 to 135161343 336 CpG island CpG island 784
Tssr13828 1 135167538 to 135167554 16 - TSS region transcription start site region 13828
Tssr13829 1 135167567 to 135167587 20 - TSS region transcription start site region 13829
Tssr221 1 135167592 to 135167593 1 - TSS region transcription start site region 221
Tssr13830 1 135167606 to 135167629 23 - TSS region transcription start site region 13830
D1Mit445.2 1 135171829 to 135171968 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 445.2
Exq2 1 135171982 to 135172078 96 QTL exploratory and excitability QTL 2
D1Mit445 1 135171982 to 135172078 96 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 445
Tssr13831 1 135180886 to 135180894 8 - TSS region transcription start site region 13831
Gm41955 1 135190594 to 135202076 11482 - lncRNA gene predicted gene, 41955
Tssr8954 1 135231984 to 135232002 18 + TSS region transcription start site region 8954
Gm4204 1 135231995 to 135233225 1230 + pseudogene predicted gene 4204
Tssr8955 1 135232077 to 135232110 33 + TSS region transcription start site region 8955
Tssr8956 1 135232536 to 135232559 23 + TSS region transcription start site region 8956
Tssr8957 1 135232877 to 135232899 22 + TSS region transcription start site region 8957
Gm26642 1 135248561 to 135266443 17882 + antisense lncRNA gene predicted gene, 26642
Elf3 1 135253574 to 135258565 4991 - protein coding gene E74-like factor 3
Tssr13832 1 135257698 to 135257709 11 - TSS region transcription start site region 13832
Cpgi785 1 135258352 to 135258546 194 CpG island CpG island 785
Tssr13833 1 135258449 to 135258465 16 - TSS region transcription start site region 13833
Cpgi786 1 135259104 to 135259277 173 CpG island CpG island 786
Rnpep 1 135262712 to 135284084 21372 - protein coding gene arginyl aminopeptidase (aminopeptidase B)
Tssr13834 1 135265346 to 135265377 31 - TSS region transcription start site region 13834
Tssr13835 1 135271565 to 135271599 34 - TSS region transcription start site region 13835
Tssr13836 1 135277942 to 135277946 4 - TSS region transcription start site region 13836
Cpgi787 1 135283207 to 135284387 1180 CpG island CpG island 787
Tssr13837 1 135284006 to 135284066 60 - TSS region transcription start site region 13837
Tssr13838 1 135284075 to 135284086 11 - TSS region transcription start site region 13838
Gm19642 1 135286954 to 135287428 474 + pseudogene predicted gene, 19642
Timm17a 1 135301535 to 135313737 12202 - protein coding gene translocase of inner mitochondrial membrane 17a
Cpgi788 1 135313299 to 135314055 756 CpG island CpG island 788
Tssr13839 1 135313729 to 135313760 31 - TSS region transcription start site region 13839
Gm41956 1 135321757 to 135324666 2909 - lncRNA gene predicted gene, 41956
Tssr8958 1 135324770 to 135324820 50 + TSS region transcription start site region 8958
Lmod1 1 135324813 to 135368065 43252 + protein coding gene leiomodin 1 (smooth muscle)
Tssr8959 1 135324822 to 135324856 34 + TSS region transcription start site region 8959
Gm22796 1 135353717 to 135353822 105 - snRNA gene predicted gene, 22796
Tssr8960 1 135363857 to 135363868 11 + TSS region transcription start site region 8960
Cpgi789 1 135368344 to 135368819 475 CpG island CpG island 789
Shisa4 1 135371057 to 135375237 4180 - protein coding gene shisa family member 4
Tssr13840 1 135371884 to 135371888 4 - TSS region transcription start site region 13840
Tssr13841 1 135372306 to 135372332 26 - TSS region transcription start site region 13841
Tssr13842 1 135373199 to 135373210 11 - TSS region transcription start site region 13842
Tssr13843 1 135373409 to 135373421 12 - TSS region transcription start site region 13843
Tssr13844 1 135373427 to 135373455 28 - TSS region transcription start site region 13844
Tssr13845 1 135373468 to 135373483 15 - TSS region transcription start site region 13845
Tssr13846 1 135373958 to 135373964 6 - TSS region transcription start site region 13846
Tssr13847 1 135374419 to 135374434 15 - TSS region transcription start site region 13847
Cpgi790 1 135374436 to 135375476 1040 CpG island CpG island 790
Tssr13848 1 135374919 to 135374933 14 - TSS region transcription start site region 13848
Tssr13849 1 135374936 to 135374946 10 - TSS region transcription start site region 13849
Tssr13850 1 135374955 to 135375098 143 - TSS region transcription start site region 13850
Tssr13851 1 135375099 to 135375110 11 - TSS region transcription start site region 13851
Tssr13852 1 135375223 to 135375228 5 - TSS region transcription start site region 13852
Tssr13853 1 135375233 to 135375245 12 - TSS region transcription start site region 13853
Tssr13854 1 135375250 to 135375264 14 - TSS region transcription start site region 13854
Tssr13855 1 135375268 to 135375277 9 - TSS region transcription start site region 13855
Tssr13856 1 135375282 to 135375285 3 - TSS region transcription start site region 13856
Ipo9 1 135382315 to 135430491 48176 - protein coding gene importin 9
Gm28277 1 135409622 to 135414186 4564 - sense intronic lncRNA gene predicted gene 28277
Cpgi791 1 135429715 to 135430870 1155 CpG island CpG island 791
Tssr13857 1 135430427 to 135430488 61 - TSS region transcription start site region 13857
Tssr13858 1 135430490 to 135430505 15 - TSS region transcription start site region 13858
Nav1 1 135434580 to 135607295 172715 - protein coding gene neuron navigator 1
Tssr13859 1 135441354 to 135441376 22 - TSS region transcription start site region 13859
Tssr13860 1 135441479 to 135441495 16 - TSS region transcription start site region 13860
Mir1231 1 135454603 to 135454683 80 - miRNA gene microRNA 1231
Tssr13861 1 135470703 to 135470720 17 - TSS region transcription start site region 13861
Tssr13862 1 135470762 to 135470780 18 - TSS region transcription start site region 13862
Tssr13863 1 135479955 to 135479969 14 - TSS region transcription start site region 13863
2610012C04Rik 1 135480392 to 135481414 1022 - unclassified gene RIKEN cDNA 2610012C04 gene
Tssr13864 1 135495524 to 135495527 3 - TSS region transcription start site region 13864
Cpgi792 1 135510151 to 135511031 880 CpG island CpG island 792
Tssr13865 1 135510375 to 135510388 13 - TSS region transcription start site region 13865
Tssr13866 1 135510393 to 135510407 14 - TSS region transcription start site region 13866
Gm32940 1 135511866 to 135532367 20501 + lncRNA gene predicted gene, 32940
Gm37333 1 135523088 to 135525338 2250 - unclassified gene predicted gene, 37333
Tssr13867 1 135564552 to 135564557 5 - TSS region transcription start site region 13867
Cpgi793 1 135584577 to 135585946 1369 CpG island CpG island 793
Gm4793 1 135584773 to 135599948 15175 + antisense lncRNA gene predicted gene 4793
Tssr13868 1 135585281 to 135585292 11 - TSS region transcription start site region 13868
Tssr13869 1 135585308 to 135585313 5 - TSS region transcription start site region 13869
Tssr13870 1 135585314 to 135585364 50 - TSS region transcription start site region 13870
Tssr13871 1 135585367 to 135585380 13 - TSS region transcription start site region 13871
Tssr13872 1 135585488 to 135585516 28 - TSS region transcription start site region 13872
Tssr13873 1 135585517 to 135585546 29 - TSS region transcription start site region 13873
Tssr13874 1 135585708 to 135585719 11 - TSS region transcription start site region 13874
Tssr13875 1 135585731 to 135585817 86 - TSS region transcription start site region 13875
Tssr13876 1 135603216 to 135603223 7 - TSS region transcription start site region 13876
Tssr13877 1 135603243 to 135603261 18 - TSS region transcription start site region 13877
Gm38399 1 135606447 to 135688105 81658 - lincRNA gene predicted gene, 38399
Tssr13878 1 135607548 to 135607561 13 - TSS region transcription start site region 13878
Tssr13879 1 135631219 to 135631224 5 - TSS region transcription start site region 13879
Tssr8961 1 135631749 to 135631773 24 + TSS region transcription start site region 8961
Tssr13880 1 135634040 to 135634051 11 - TSS region transcription start site region 13880
Tssr13881 1 135660264 to 135660277 13 - TSS region transcription start site region 13881