Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:134596620-135136628

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdm5b 1 134560178 to 134632878 72700 + protein coding gene lysine (K)-specific demethylase 5B
Tssr8910 1 134613326 to 134613356 30 + TSS region transcription start site region 8910
Tssr8911 1 134632129 to 134632133 4 + TSS region transcription start site region 8911
Gm26783 1 134642254 to 134646520 4266 - lincRNA gene predicted gene, 26783
Cpgi774 1 134646226 to 134647450 1224 CpG island CpG island 774
Tssr8912 1 134646551 to 134646561 10 + TSS region transcription start site region 8912
Syt2 1 134646564 to 134753149 106585 + protein coding gene synaptotagmin II
Tssr8913 1 134646570 to 134646587 17 + TSS region transcription start site region 8913
Tssr8914 1 134646602 to 134646686 84 + TSS region transcription start site region 8914
Tssr8915 1 134646701 to 134646711 10 + TSS region transcription start site region 8915
Tssr8916 1 134646747 to 134646758 11 + TSS region transcription start site region 8916
Tssr8917 1 134646769 to 134646776 7 + TSS region transcription start site region 8917
Cpgi775 1 134708792 to 134709683 891 CpG island CpG island 775
Tssr8918 1 134709259 to 134709289 30 + TSS region transcription start site region 8918
Tssr8919 1 134709293 to 134709318 25 + TSS region transcription start site region 8919
Tssr8920 1 134709361 to 134709369 8 + TSS region transcription start site region 8920
Cpgi776 1 134709963 to 134710345 382 CpG island CpG island 776
Tssr8921 1 134723414 to 134723418 4 + TSS region transcription start site region 8921
Cpgi777 1 134747439 to 134747857 418 CpG island CpG island 777
Ppp1r12b 1 134754658 to 134955942 201284 - protein coding gene protein phosphatase 1, regulatory subunit 12B
Tssr13799 1 134773263 to 134773268 5 - TSS region transcription start site region 13799
Gm32670 1 134773486 to 134805865 32379 + lncRNA gene predicted gene, 32670
Tssr13800 1 134784701 to 134784748 47 - TSS region transcription start site region 13800
Gm37949 1 134799895 to 134801985 2090 - unclassified gene predicted gene, 37949
Tssr13801 1 134802713 to 134802718 5 - TSS region transcription start site region 13801
Tssr13802 1 134803423 to 134803434 11 - TSS region transcription start site region 13802
Tssr13803 1 134803715 to 134803726 11 - TSS region transcription start site region 13803
Tssr13804 1 134803742 to 134803753 11 - TSS region transcription start site region 13804
Tssr13805 1 134803780 to 134803863 83 - TSS region transcription start site region 13805
Gm22232 1 134809275 to 134809368 93 + miRNA gene predicted gene, 22232
Gm37677 1 134819916 to 134827549 7633 - unclassified gene predicted gene, 37677
Gm28892 1 134834142 to 134846415 12273 + antisense lncRNA gene predicted gene 28892
Tssr13806 1 134846768 to 134846779 11 - TSS region transcription start site region 13806
Tssr13807 1 134866555 to 134866566 11 - TSS region transcription start site region 13807
Tssr13808 1 134866567 to 134866577 10 - TSS region transcription start site region 13808
Tssr13809 1 134866620 to 134866628 8 - TSS region transcription start site region 13809
Cpgi778 1 134955242 to 134956150 908 CpG island CpG island 778
Tssr13810 1 134955842 to 134955843 1 - TSS region transcription start site region 13810
Tssr13811 1 134955847 to 134955852 5 - TSS region transcription start site region 13811
Tssr13812 1 134955877 to 134955891 14 - TSS region transcription start site region 13812
Tssr13813 1 134955908 to 134955955 47 - TSS region transcription start site region 13813
Cpgi779 1 134962115 to 134962851 736 CpG island CpG island 779
Tssr8922 1 134962553 to 134962568 15 + TSS region transcription start site region 8922
Ube2t 1 134962565 to 134974162 11597 + protein coding gene ubiquitin-conjugating enzyme E2T
Tssr8923 1 134962571 to 134962627 56 + TSS region transcription start site region 8923
Tssr8924 1 134962631 to 134962642 11 + TSS region transcription start site region 8924
Lgr6 1 134983301 to 135105276 121975 - protein coding gene leucine-rich repeat-containing G protein-coupled receptor 6
Tssr13814 1 134985018 to 134985025 7 - TSS region transcription start site region 13814
Cpgi780 1 134987254 to 134988280 1026 CpG island CpG island 780
Tssr8925 1 134987786 to 134987797 11 + TSS region transcription start site region 8925
Cpgi781 1 135085338 to 135085645 307 CpG island CpG island 781
Cpgi782 1 135104721 to 135105589 868 CpG island CpG island 782
Tssr13815 1 135105159 to 135105170 11 - TSS region transcription start site region 13815
Tssr13816 1 135105179 to 135105207 28 - TSS region transcription start site region 13816
Tssr13817 1 135105210 to 135105225 15 - TSS region transcription start site region 13817
Tssr219 1 135105234 to 135105237 3 - TSS region transcription start site region 219
Tssr13818 1 135105333 to 135105349 16 - TSS region transcription start site region 13818
Tssr13819 1 135105351 to 135105362 11 - TSS region transcription start site region 13819
Ptprv 1 135108498 to 135132575 24077 - protein coding gene protein tyrosine phosphatase, receptor type, V
Tssr8926 1 135108928 to 135108947 19 + TSS region transcription start site region 8926
Tssr8927 1 135108955 to 135108967 12 + TSS region transcription start site region 8927
Gm10535 1 135108961 to 135113378 4417 + antisense lncRNA gene predicted gene 10535
Tssr13820 1 135129202 to 135129215 13 - TSS region transcription start site region 13820
Tssr13821 1 135131155 to 135131164 9 - TSS region transcription start site region 13821
Tssr8928 1 135131240 to 135131258 18 + TSS region transcription start site region 8928
Tssr8929 1 135131273 to 135131306 33 + TSS region transcription start site region 8929
Tssr13822 1 135131747 to 135131755 8 - TSS region transcription start site region 13822
Tssr8930 1 135131809 to 135131859 50 + TSS region transcription start site region 8930
Tssr13823 1 135132543 to 135132554 11 - TSS region transcription start site region 13823
Tssr13824 1 135132560 to 135132601 41 - TSS region transcription start site region 13824
Tssr8931 1 135132693 to 135132741 48 + TSS region transcription start site region 8931
Ptpn7 1 135132700 to 135145317 12617 + protein coding gene protein tyrosine phosphatase, non-receptor type 7
Tssr13825 1 135133193 to 135133226 33 - TSS region transcription start site region 13825
Tssr8932 1 135133258 to 135133269 11 + TSS region transcription start site region 8932
Tssr8933 1 135133272 to 135133319 47 + TSS region transcription start site region 8933
Tssr8934 1 135133853 to 135133885 32 + TSS region transcription start site region 8934