Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:134493486-135085865

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi770 1 134494496 to 134495114 618 CpG island CpG island 770
Tssr8899 1 134494628 to 134494679 51 + TSS region transcription start site region 8899
Rabif 1 134494660 to 134507885 13225 + protein coding gene RAB interacting factor
Tssr8900 1 134494736 to 134494763 27 + TSS region transcription start site region 8900
Tssr8901 1 134494986 to 134495016 30 + TSS region transcription start site region 8901
Gm25612 1 134505338 to 134505463 125 + snoRNA gene predicted gene, 25612
Cpgi771 1 134513220 to 134513897 677 CpG island CpG island 771
Gm15454 1 134518081 to 134518563 482 + pseudogene predicted gene 15454
Gm29376 1 134519978 to 134524139 4161 + pseudogene predicted gene 29376
Gm46159 1 134527918 to 134532609 4691 + lncRNA gene predicted gene, 46159
Tssr13795 1 134540717 to 134540725 8 - TSS region transcription start site region 13795
Tssr8902 1 134540822 to 134540839 17 + TSS region transcription start site region 8902
Tssr8903 1 134540846 to 134540862 16 + TSS region transcription start site region 8903
Mgat4e 1 134540941 to 134549682 8741 - protein coding gene MGAT4 family, member E
Gm46160 1 134546864 to 134547540 676 + lncRNA gene predicted gene, 46160
Tssr13796 1 134549609 to 134549616 7 - TSS region transcription start site region 13796
Tssr13797 1 134549663 to 134549687 24 - TSS region transcription start site region 13797
Cpgi772 1 134556173 to 134557060 887 CpG island CpG island 772
Tssr13798 1 134556987 to 134557002 15 - TSS region transcription start site region 13798
Cpgi773 1 134559886 to 134561599 1713 CpG island CpG island 773
Tssr8904 1 134560157 to 134560180 23 + TSS region transcription start site region 8904
Kdm5b 1 134560178 to 134632878 72700 + protein coding gene lysine (K)-specific demethylase 5B
Tssr8905 1 134560190 to 134560213 23 + TSS region transcription start site region 8905
Tssr8906 1 134560214 to 134560233 19 + TSS region transcription start site region 8906
Tssr8907 1 134574470 to 134574474 4 + TSS region transcription start site region 8907
Tssr8908 1 134575358 to 134575362 4 + TSS region transcription start site region 8908
Tssr8909 1 134576420 to 134576424 4 + TSS region transcription start site region 8909
Tssr8910 1 134613326 to 134613356 30 + TSS region transcription start site region 8910
Tssr8911 1 134632129 to 134632133 4 + TSS region transcription start site region 8911
Gm26783 1 134642254 to 134646520 4266 - lincRNA gene predicted gene, 26783
Cpgi774 1 134646226 to 134647450 1224 CpG island CpG island 774
Tssr8912 1 134646551 to 134646561 10 + TSS region transcription start site region 8912
Syt2 1 134646564 to 134753149 106585 + protein coding gene synaptotagmin II
Tssr8913 1 134646570 to 134646587 17 + TSS region transcription start site region 8913
Tssr8914 1 134646602 to 134646686 84 + TSS region transcription start site region 8914
Tssr8915 1 134646701 to 134646711 10 + TSS region transcription start site region 8915
Tssr8916 1 134646747 to 134646758 11 + TSS region transcription start site region 8916
Tssr8917 1 134646769 to 134646776 7 + TSS region transcription start site region 8917
Cpgi775 1 134708792 to 134709683 891 CpG island CpG island 775
Tssr8918 1 134709259 to 134709289 30 + TSS region transcription start site region 8918
Tssr8919 1 134709293 to 134709318 25 + TSS region transcription start site region 8919
Tssr8920 1 134709361 to 134709369 8 + TSS region transcription start site region 8920
Cpgi776 1 134709963 to 134710345 382 CpG island CpG island 776
Tssr8921 1 134723414 to 134723418 4 + TSS region transcription start site region 8921
Cpgi777 1 134747439 to 134747857 418 CpG island CpG island 777
Ppp1r12b 1 134754658 to 134955942 201284 - protein coding gene protein phosphatase 1, regulatory subunit 12B
Tssr13799 1 134773263 to 134773268 5 - TSS region transcription start site region 13799
Gm32670 1 134773486 to 134805865 32379 + lncRNA gene predicted gene, 32670
Tssr13800 1 134784701 to 134784748 47 - TSS region transcription start site region 13800
Gm37949 1 134799895 to 134801985 2090 - unclassified gene predicted gene, 37949
Tssr13801 1 134802713 to 134802718 5 - TSS region transcription start site region 13801
Tssr13802 1 134803423 to 134803434 11 - TSS region transcription start site region 13802
Tssr13803 1 134803715 to 134803726 11 - TSS region transcription start site region 13803
Tssr13804 1 134803742 to 134803753 11 - TSS region transcription start site region 13804
Tssr13805 1 134803780 to 134803863 83 - TSS region transcription start site region 13805
Gm22232 1 134809275 to 134809368 93 + miRNA gene predicted gene, 22232
Gm37677 1 134819916 to 134827549 7633 - unclassified gene predicted gene, 37677
Gm28892 1 134834142 to 134846415 12273 + antisense lncRNA gene predicted gene 28892
Tssr13806 1 134846768 to 134846779 11 - TSS region transcription start site region 13806
Tssr13807 1 134866555 to 134866566 11 - TSS region transcription start site region 13807
Tssr13808 1 134866567 to 134866577 10 - TSS region transcription start site region 13808
Tssr13809 1 134866620 to 134866628 8 - TSS region transcription start site region 13809
Cpgi778 1 134955242 to 134956150 908 CpG island CpG island 778
Tssr13810 1 134955842 to 134955843 1 - TSS region transcription start site region 13810
Tssr13811 1 134955847 to 134955852 5 - TSS region transcription start site region 13811
Tssr13812 1 134955877 to 134955891 14 - TSS region transcription start site region 13812
Tssr13813 1 134955908 to 134955955 47 - TSS region transcription start site region 13813
Cpgi779 1 134962115 to 134962851 736 CpG island CpG island 779
Tssr8922 1 134962553 to 134962568 15 + TSS region transcription start site region 8922
Ube2t 1 134962565 to 134974162 11597 + protein coding gene ubiquitin-conjugating enzyme E2T
Tssr8923 1 134962571 to 134962627 56 + TSS region transcription start site region 8923
Tssr8924 1 134962631 to 134962642 11 + TSS region transcription start site region 8924
Lgr6 1 134983301 to 135105276 121975 - protein coding gene leucine-rich repeat-containing G protein-coupled receptor 6
Tssr13814 1 134985018 to 134985025 7 - TSS region transcription start site region 13814
Cpgi780 1 134987254 to 134988280 1026 CpG island CpG island 780
Tssr8925 1 134987786 to 134987797 11 + TSS region transcription start site region 8925
Cpgi781 1 135085338 to 135085645 307 CpG island CpG island 781