Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:134304986-134685016

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppfia4 1 134296783 to 134332928 36145 - protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Tssr8873 1 134325544 to 134325551 7 + TSS region transcription start site region 8873
Tssr13789 1 134326947 to 134326956 9 - TSS region transcription start site region 13789
Tssr13790 1 134326964 to 134326992 28 - TSS region transcription start site region 13790
Cpgi765 1 134344136 to 134344944 808 CpG island CpG island 765
Tssr13791 1 134344657 to 134344729 72 - TSS region transcription start site region 13791
Tmem183a 1 134346097 to 134361979 15882 - protein coding gene transmembrane protein 183A
Cpgi766 1 134361338 to 134362302 964 CpG island CpG island 766
Tssr13792 1 134361933 to 134361998 65 - TSS region transcription start site region 13792
Tssr8874 1 134385938 to 134385943 5 + TSS region transcription start site region 8874
4933406M09Rik 1 134385940 to 134390981 5041 + protein coding gene RIKEN cDNA 4933406M09 gene
Cyb5r1 1 134405561 to 134411740 6179 + protein coding gene cytochrome b5 reductase 1
Tssr13793 1 134405630 to 134405635 5 - TSS region transcription start site region 13793
Tssr8875 1 134405702 to 134405724 22 + TSS region transcription start site region 8875
Tssr8876 1 134405725 to 134405736 11 + TSS region transcription start site region 8876
Tssr8877 1 134405768 to 134405792 24 + TSS region transcription start site region 8877
Tssr8878 1 134405802 to 134405813 11 + TSS region transcription start site region 8878
Cpgi767 1 134405846 to 134406405 559 CpG island CpG island 767
Tssr217 1 134405965 to 134405970 5 + TSS region transcription start site region 217
Tssr8879 1 134405984 to 134406005 21 + TSS region transcription start site region 8879
Tssr8880 1 134406017 to 134406029 12 + TSS region transcription start site region 8880
Tssr218 1 134406051 to 134406062 11 + TSS region transcription start site region 218
Tssr8881 1 134406315 to 134406326 11 + TSS region transcription start site region 8881
Tssr8882 1 134406334 to 134406357 23 + TSS region transcription start site region 8882
Tssr8883 1 134406374 to 134406385 11 + TSS region transcription start site region 8883
Tssr8884 1 134408086 to 134408129 43 + TSS region transcription start site region 8884
Cpgi768 1 134415040 to 134416078 1038 CpG island CpG island 768
Tssr13794 1 134415251 to 134415287 36 - TSS region transcription start site region 13794
Adipor1 1 134415378 to 134433351 17973 + protein coding gene adiponectin receptor 1
Tssr8885 1 134415388 to 134415395 7 + TSS region transcription start site region 8885
Tssr8886 1 134415396 to 134415408 12 + TSS region transcription start site region 8886
Tssr8887 1 134415414 to 134415504 90 + TSS region transcription start site region 8887
Tssr8888 1 134415510 to 134415534 24 + TSS region transcription start site region 8888
Tssr8889 1 134415710 to 134415785 75 + TSS region transcription start site region 8889
Tssr8890 1 134423995 to 134424027 32 + TSS region transcription start site region 8890
Tssr8891 1 134424755 to 134424775 20 + TSS region transcription start site region 8891
Tssr8892 1 134428115 to 134428155 40 + TSS region transcription start site region 8892
Tssr8893 1 134431147 to 134431211 64 + TSS region transcription start site region 8893
Tssr8894 1 134431995 to 134432024 29 + TSS region transcription start site region 8894
Tssr8895 1 134432198 to 134432209 11 + TSS region transcription start site region 8895
Platr1 1 134435628 to 134439597 3969 + lincRNA gene pluripotency associated transcript 1
Gm37935 1 134454492 to 134455473 981 - unclassified gene predicted gene, 37935
Cpgi769 1 134455151 to 134455875 724 CpG island CpG island 769
Klhl12 1 134455496 to 134490880 35384 + protein coding gene kelch-like 12
Tssr8896 1 134455509 to 134455523 14 + TSS region transcription start site region 8896
Tssr8897 1 134455524 to 134455564 40 + TSS region transcription start site region 8897
Tssr8898 1 134481191 to 134481195 4 + TSS region transcription start site region 8898
Cpgi770 1 134494496 to 134495114 618 CpG island CpG island 770
Tssr8899 1 134494628 to 134494679 51 + TSS region transcription start site region 8899
Rabif 1 134494660 to 134507885 13225 + protein coding gene RAB interacting factor
Tssr8900 1 134494736 to 134494763 27 + TSS region transcription start site region 8900
Tssr8901 1 134494986 to 134495016 30 + TSS region transcription start site region 8901
Gm25612 1 134505338 to 134505463 125 + snoRNA gene predicted gene, 25612
Cpgi771 1 134513220 to 134513897 677 CpG island CpG island 771
Gm15454 1 134518081 to 134518563 482 + pseudogene predicted gene 15454
Gm29376 1 134519978 to 134524139 4161 + pseudogene predicted gene 29376
Gm46159 1 134527918 to 134532609 4691 + lncRNA gene predicted gene, 46159
Tssr13795 1 134540717 to 134540725 8 - TSS region transcription start site region 13795
Tssr8902 1 134540822 to 134540839 17 + TSS region transcription start site region 8902
Tssr8903 1 134540846 to 134540862 16 + TSS region transcription start site region 8903
Mgat4e 1 134540941 to 134549682 8741 - protein coding gene MGAT4 family, member E
Gm46160 1 134546864 to 134547540 676 + lncRNA gene predicted gene, 46160
Tssr13796 1 134549609 to 134549616 7 - TSS region transcription start site region 13796
Tssr13797 1 134549663 to 134549687 24 - TSS region transcription start site region 13797
Cpgi772 1 134556173 to 134557060 887 CpG island CpG island 772
Tssr13798 1 134556987 to 134557002 15 - TSS region transcription start site region 13798
Cpgi773 1 134559886 to 134561599 1713 CpG island CpG island 773
Tssr8904 1 134560157 to 134560180 23 + TSS region transcription start site region 8904
Kdm5b 1 134560178 to 134632878 72700 + protein coding gene lysine (K)-specific demethylase 5B
Tssr8905 1 134560190 to 134560213 23 + TSS region transcription start site region 8905
Tssr8906 1 134560214 to 134560233 19 + TSS region transcription start site region 8906
Tssr8907 1 134574470 to 134574474 4 + TSS region transcription start site region 8907
Tssr8908 1 134575358 to 134575362 4 + TSS region transcription start site region 8908
Tssr8909 1 134576420 to 134576424 4 + TSS region transcription start site region 8909
Tssr8910 1 134613326 to 134613356 30 + TSS region transcription start site region 8910
Tssr8911 1 134632129 to 134632133 4 + TSS region transcription start site region 8911
Gm26783 1 134642254 to 134646520 4266 - lincRNA gene predicted gene, 26783
Cpgi774 1 134646226 to 134647450 1224 CpG island CpG island 774
Tssr8912 1 134646551 to 134646561 10 + TSS region transcription start site region 8912
Syt2 1 134646564 to 134753149 106585 + protein coding gene synaptotagmin II
Tssr8913 1 134646570 to 134646587 17 + TSS region transcription start site region 8913
Tssr8914 1 134646602 to 134646686 84 + TSS region transcription start site region 8914
Tssr8915 1 134646701 to 134646711 10 + TSS region transcription start site region 8915
Tssr8916 1 134646747 to 134646758 11 + TSS region transcription start site region 8916
Tssr8917 1 134646769 to 134646776 7 + TSS region transcription start site region 8917