Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:133394479-133665270

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox13 1 133382300 to 133424212 41912 - protein coding gene SRY (sex determining region Y)-box 13
Tssr13688 1 133422697 to 133422714 17 - TSS region transcription start site region 13688
Cpgi748 1 133422732 to 133424705 1973 CpG island CpG island 748
Tssr8816 1 133424310 to 133424320 10 + TSS region transcription start site region 8816
Tssr13689 1 133424385 to 133424404 19 - TSS region transcription start site region 13689
Tssr13690 1 133424412 to 133424466 54 - TSS region transcription start site region 13690
D1Mit348 1 133446105 to 133446248 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 348
D1Mit164 1 133480628 to 133480769 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 164
Cpgi749 1 133493014 to 133493238 224 CpG island CpG island 749
Tssr13691 1 133493428 to 133493441 13 - TSS region transcription start site region 13691
Gm8596 1 133529479 to 133530270 791 + pseudogene predicted gene 8596
Gm23939 1 133601223 to 133601355 132 + snoRNA gene predicted gene, 23939
Snrpe 1 133603871 to 133610280 6409 - protein coding gene small nuclear ribonucleoprotein E
Cpgi750 1 133609695 to 133610513 818 CpG island CpG island 750
Tssr13692 1 133610242 to 133610245 3 - TSS region transcription start site region 13692
Tssr13693 1 133610253 to 133610294 41 - TSS region transcription start site region 13693
Tssr8817 1 133610397 to 133610417 20 + TSS region transcription start site region 8817
Gm26706 1 133610411 to 133614422 4011 + lincRNA gene predicted gene, 26706
Zc3h11a 1 133619868 to 133661399 41531 - protein coding gene zinc finger CCCH type containing 11A
Gm38394 1 133619940 to 133661318 41378 - protein coding gene predicted gene, 38394
Tssr13694 1 133648878 to 133648883 5 - TSS region transcription start site region 13694
Tssr13695 1 133655159 to 133655169 10 - TSS region transcription start site region 13695
Zbed6 1 133655879 to 133660885 5006 - protein coding gene zinc finger, BED type containing 6
Cpgi751 1 133660477 to 133660726 249 CpG island CpG island 751
Tssr13696 1 133660806 to 133660818 12 - TSS region transcription start site region 13696
Tssr13697 1 133660823 to 133660844 21 - TSS region transcription start site region 13697
Cpgi752 1 133660873 to 133661562 689 CpG island CpG island 752
Tssr13698 1 133660949 to 133660974 25 - TSS region transcription start site region 13698
Tssr8818 1 133661031 to 133661054 23 + TSS region transcription start site region 8818
Tssr13699 1 133661345 to 133661386 41 - TSS region transcription start site region 13699
Tssr13700 1 133661387 to 133661399 12 - TSS region transcription start site region 13700
Tssr8819 1 133664410 to 133664419 9 + TSS region transcription start site region 8819
Tssr8820 1 133664420 to 133664442 22 + TSS region transcription start site region 8820
Tssr8821 1 133664444 to 133664464 20 + TSS region transcription start site region 8821