Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:133344410-133984419

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D1Mit1011 1 133350256 to 133350435 179 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1011
Tssr212 1 133350285 to 133350300 15 + TSS region transcription start site region 212
D1Mit1010 1 133350302 to 133350435 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1010
D1Mit1012 1 133350512 to 133350690 178 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1012
Tssr8801 1 133350667 to 133350683 16 + TSS region transcription start site region 8801
Ren1 1 133350674 to 133360320 9646 + protein coding gene renin 1 structural
Tssr8802 1 133352510 to 133352529 19 + TSS region transcription start site region 8802
Tssr8803 1 133354210 to 133354239 29 + TSS region transcription start site region 8803
D1Mit31.1 1 133355183 to 133355292 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31.1
D1Mit31 1 133355274 to 133355443 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31
Tssr8804 1 133360254 to 133360265 11 + TSS region transcription start site region 8804
Jckm4 1 133363098 to 133363199 101 QTL juvenile cystic kidney modifier 4
D1Mit30 1 133363098 to 133363199 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 30
Jckm2 1 133363199 to 74952818 -58410381 QTL juvenile cystic kidney modifier 2
Cpgi746 1 133363386 to 133364497 1111 CpG island CpG island 746
Tssr8805 1 133363564 to 133363581 17 + TSS region transcription start site region 8805
Etnk2 1 133363572 to 133380336 16764 + protein coding gene ethanolamine kinase 2
Tssr8806 1 133363584 to 133363623 39 + TSS region transcription start site region 8806
Tssr8807 1 133363624 to 133363633 9 + TSS region transcription start site region 8807
Tssr8808 1 133363689 to 133363696 7 + TSS region transcription start site region 8808
Tssr8809 1 133363745 to 133363755 10 + TSS region transcription start site region 8809
Tssr8810 1 133363781 to 133363813 32 + TSS region transcription start site region 8810
Tssr8811 1 133363816 to 133363821 5 + TSS region transcription start site region 8811
Tssr8812 1 133363825 to 133363840 15 + TSS region transcription start site region 8812
Tssr8813 1 133365122 to 133365135 13 + TSS region transcription start site region 8813
Tssr8814 1 133365147 to 133365156 9 + TSS region transcription start site region 8814
Tssr8815 1 133365160 to 133365190 30 + TSS region transcription start site region 8815
D1Mit312S 1 133381125 to 133381277 152 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-312S
D1Mit312 1 133381325 to 133381432 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 312
Sox13 1 133382300 to 133424212 41912 - protein coding gene SRY (sex determining region Y)-box 13
Tssr13687 1 133382798 to 133382808 10 - TSS region transcription start site region 13687
Tssr213 1 133386080 to 133386124 44 - TSS region transcription start site region 213
Cpgi747 1 133388059 to 133388302 243 CpG island CpG island 747
Tssr13688 1 133422697 to 133422714 17 - TSS region transcription start site region 13688
Cpgi748 1 133422732 to 133424705 1973 CpG island CpG island 748
Tssr8816 1 133424310 to 133424320 10 + TSS region transcription start site region 8816
Tssr13689 1 133424385 to 133424404 19 - TSS region transcription start site region 13689
Tssr13690 1 133424412 to 133424466 54 - TSS region transcription start site region 13690
D1Mit348 1 133446105 to 133446248 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 348
D1Mit164 1 133480628 to 133480769 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 164
Cpgi749 1 133493014 to 133493238 224 CpG island CpG island 749
Tssr13691 1 133493428 to 133493441 13 - TSS region transcription start site region 13691
Gm8596 1 133529479 to 133530270 791 + pseudogene predicted gene 8596
Gm23939 1 133601223 to 133601355 132 + snoRNA gene predicted gene, 23939
Snrpe 1 133603871 to 133610280 6409 - protein coding gene small nuclear ribonucleoprotein E
Cpgi750 1 133609695 to 133610513 818 CpG island CpG island 750
Tssr13692 1 133610242 to 133610245 3 - TSS region transcription start site region 13692
Tssr13693 1 133610253 to 133610294 41 - TSS region transcription start site region 13693
Tssr8817 1 133610397 to 133610417 20 + TSS region transcription start site region 8817
Gm26706 1 133610411 to 133614422 4011 + lincRNA gene predicted gene, 26706
Zc3h11a 1 133619868 to 133661399 41531 - protein coding gene zinc finger CCCH type containing 11A
Gm38394 1 133619940 to 133661318 41378 - protein coding gene predicted gene, 38394
Tssr13694 1 133648878 to 133648883 5 - TSS region transcription start site region 13694
Tssr13695 1 133655159 to 133655169 10 - TSS region transcription start site region 13695
Zbed6 1 133655879 to 133660885 5006 - protein coding gene zinc finger, BED type containing 6
Cpgi751 1 133660477 to 133660726 249 CpG island CpG island 751
Tssr13696 1 133660806 to 133660818 12 - TSS region transcription start site region 13696
Tssr13697 1 133660823 to 133660844 21 - TSS region transcription start site region 13697
Cpgi752 1 133660873 to 133661562 689 CpG island CpG island 752
Tssr13698 1 133660949 to 133660974 25 - TSS region transcription start site region 13698
Tssr8818 1 133661031 to 133661054 23 + TSS region transcription start site region 8818
Tssr13699 1 133661345 to 133661386 41 - TSS region transcription start site region 13699
Tssr13700 1 133661387 to 133661399 12 - TSS region transcription start site region 13700
Tssr8819 1 133664410 to 133664419 9 + TSS region transcription start site region 8819
Tssr8820 1 133664420 to 133664442 22 + TSS region transcription start site region 8820
Tssr8821 1 133664444 to 133664464 20 + TSS region transcription start site region 8821
Tssr8822 1 133668007 to 133668025 18 + TSS region transcription start site region 8822
Tssr13701 1 133670445 to 133670464 19 - TSS region transcription start site region 13701
Lax1 1 133679091 to 133690108 11017 - protein coding gene lymphocyte transmembrane adaptor 1
Tssr13702 1 133689925 to 133689936 11 - TSS region transcription start site region 13702
Tssr13703 1 133689947 to 133689962 15 - TSS region transcription start site region 13703
Tssr13704 1 133690002 to 133690016 14 - TSS region transcription start site region 13704
Tssr13705 1 133690061 to 133690072 11 - TSS region transcription start site region 13705
Tssr13706 1 133690090 to 133690097 7 - TSS region transcription start site region 13706
Tssr13707 1 133690100 to 133690115 15 - TSS region transcription start site region 13707
Tssr8823 1 133694750 to 133694764 14 + TSS region transcription start site region 8823
Atp2b4 1 133702674 to 133801038 98364 - protein coding gene ATPase, Ca++ transporting, plasma membrane 4
Tssr13708 1 133719112 to 133719116 4 - TSS region transcription start site region 13708
Mir6903 1 133726558 to 133726645 87 - miRNA gene microRNA 6903
Cpgi753 1 133736231 to 133736405 174 CpG island CpG island 753
Tssr13709 1 133736365 to 133736414 49 - TSS region transcription start site region 13709
Tssr13710 1 133737986 to 133737990 4 - TSS region transcription start site region 13710
Tssr13711 1 133753486 to 133753535 49 - TSS region transcription start site region 13711
Tssr13712 1 133753838 to 133753857 19 - TSS region transcription start site region 13712
Tssr8824 1 133754893 to 133754895 2 + TSS region transcription start site region 8824
Gm37368 1 133775210 to 133778421 3211 - unclassified gene predicted gene, 37368
Cpgi754 1 133800674 to 133800897 223 CpG island CpG island 754
Tssr13713 1 133800964 to 133800973 9 - TSS region transcription start site region 13713
Tssr13714 1 133800975 to 133800986 11 - TSS region transcription start site region 13714
Tssr13715 1 133800996 to 133801023 27 - TSS region transcription start site region 13715
Tssr13716 1 133801031 to 133801038 7 - TSS region transcription start site region 13716
Cpgi755 1 133801050 to 133801228 178 CpG island CpG island 755
Tssr13717 1 133801057 to 133801066 9 - TSS region transcription start site region 13717
Tssr13718 1 133801183 to 133801185 2 - TSS region transcription start site region 13718
Tssr214 1 133801491 to 133801495 4 + TSS region transcription start site region 214
Gm10537 1 133829528 to 133831225 1697 + protein coding gene predicted gene 10537
Gm41954 1 133832595 to 133845212 12617 - lncRNA gene predicted gene, 41954
Gm28441 1 133835189 to 133838372 3183 + lincRNA gene predicted gene 28441
Gm31515 1 133859697 to 133891066 31369 + lncRNA gene predicted gene, 31515
Tssr8825 1 133880917 to 133880926 9 + TSS region transcription start site region 8825
Tssr8826 1 133880942 to 133880947 5 + TSS region transcription start site region 8826
Optc 1 133897199 to 133907999 10800 - protein coding gene opticin
Tssr13719 1 133899152 to 133899173 21 - TSS region transcription start site region 13719
Tssr13720 1 133899188 to 133899214 26 - TSS region transcription start site region 13720
Tssr13721 1 133899215 to 133899250 35 - TSS region transcription start site region 13721
Gm15851 1 133906531 to 133914822 8291 + antisense lncRNA gene predicted gene 15851
Tssr13722 1 133906954 to 133906960 6 - TSS region transcription start site region 13722
Tssr13723 1 133906973 to 133907014 41 - TSS region transcription start site region 13723
Tssr13724 1 133907053 to 133907062 9 - TSS region transcription start site region 13724
Cpgi756 1 133908416 to 133909100 684 CpG island CpG island 756
Prelp 1 133910304 to 133921414 11110 - protein coding gene proline arginine-rich end leucine-rich repeat
Tssr13725 1 133911035 to 133911049 14 - TSS region transcription start site region 13725
Tssr13726 1 133911496 to 133911508 12 - TSS region transcription start site region 13726
Tssr13727 1 133912321 to 133912343 22 - TSS region transcription start site region 13727
Tssr13728 1 133912426 to 133912449 23 - TSS region transcription start site region 13728
Tssr13729 1 133912535 to 133912547 12 - TSS region transcription start site region 13729
Tssr13730 1 133914621 to 133914631 10 - TSS region transcription start site region 13730
Tssr8827 1 133914637 to 133914669 32 + TSS region transcription start site region 8827
Tssr13731 1 133914697 to 133914717 20 - TSS region transcription start site region 13731
Tssr13732 1 133914736 to 133914742 6 - TSS region transcription start site region 13732
Tssr13733 1 133914752 to 133914766 14 - TSS region transcription start site region 13733
Tssr13734 1 133914770 to 133914781 11 - TSS region transcription start site region 13734
Tssr13735 1 133914789 to 133914798 9 - TSS region transcription start site region 13735
Tssr13736 1 133914829 to 133914838 9 - TSS region transcription start site region 13736
Tssr13737 1 133914876 to 133914886 10 - TSS region transcription start site region 13737
Tssr13738 1 133914919 to 133914924 5 - TSS region transcription start site region 13738
Tssr13739 1 133914970 to 133914982 12 - TSS region transcription start site region 13739
Tssr13740 1 133915018 to 133915042 24 - TSS region transcription start site region 13740
Tssr13741 1 133915115 to 133915133 18 - TSS region transcription start site region 13741
Tssr13742 1 133915168 to 133915198 30 - TSS region transcription start site region 13742
Tssr13743 1 133915216 to 133915265 49 - TSS region transcription start site region 13743
Tssr13744 1 133915290 to 133915295 5 - TSS region transcription start site region 13744
Tssr13745 1 133915305 to 133915323 18 - TSS region transcription start site region 13745
Tssr215 1 133915378 to 133915383 5 - TSS region transcription start site region 215
Tssr13746 1 133915392 to 133915405 13 - TSS region transcription start site region 13746
Tssr13747 1 133915414 to 133915421 7 - TSS region transcription start site region 13747
Tssr13748 1 133921346 to 133921357 11 - TSS region transcription start site region 13748
Tssr13749 1 133921361 to 133921392 31 - TSS region transcription start site region 13749
Tssr13750 1 133921393 to 133921409 16 - TSS region transcription start site region 13750
Tssr13751 1 133928694 to 133928701 7 - TSS region transcription start site region 13751
Tssr13752 1 133929891 to 133929904 13 - TSS region transcription start site region 13752
Tssr13753 1 133930025 to 133930038 13 - TSS region transcription start site region 13753
Tssr13754 1 133930044 to 133930047 3 - TSS region transcription start site region 13754
Tssr13755 1 133930050 to 133930072 22 - TSS region transcription start site region 13755
Tssr13756 1 133930074 to 133930092 18 - TSS region transcription start site region 13756
Tssr13757 1 133930111 to 133930126 15 - TSS region transcription start site region 13757
Tssr13758 1 133930132 to 133930146 14 - TSS region transcription start site region 13758
Tssr13759 1 133930169 to 133930178 9 - TSS region transcription start site region 13759
Tssr13760 1 133930179 to 133930184 5 - TSS region transcription start site region 13760
Gm1627 1 133962162 to 133971938 9776 + lincRNA gene predicted gene 1627
Bmncr 1 133977282 to 134006449 29167 + lncRNA gene bone marrow associated noncoding RNA
Tssr8828 1 133977479 to 133977490 11 + TSS region transcription start site region 8828