Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:133204310-133644320

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plekha6 1 133164210 to 133303435 139225 + protein coding gene pleckstrin homology domain containing, family A member 6
Tssr8788 1 133204677 to 133204709 32 + TSS region transcription start site region 8788
Tssr8789 1 133223040 to 133223048 8 + TSS region transcription start site region 8789
Tssr8790 1 133232025 to 133232050 25 + TSS region transcription start site region 8790
Tssr8791 1 133241183 to 133241213 30 + TSS region transcription start site region 8791
Tssr8792 1 133241217 to 133241260 43 + TSS region transcription start site region 8792
Tssr8793 1 133245888 to 133245905 17 + TSS region transcription start site region 8793
Tssr8794 1 133246092 to 133246099 7 + TSS region transcription start site region 8794
Gm19461 1 133250398 to 133269808 19410 - antisense lncRNA gene predicted gene, 19461
Tssr8795 1 133255244 to 133255248 4 + TSS region transcription start site region 8795
Tssr8796 1 133255679 to 133255728 49 + TSS region transcription start site region 8796
Tssr8797 1 133256082 to 133256099 17 + TSS region transcription start site region 8797
Tssr8798 1 133256113 to 133256155 42 + TSS region transcription start site region 8798
Tssr13683 1 133256322 to 133256345 23 - TSS region transcription start site region 13683
Tssr13684 1 133258506 to 133258514 8 - TSS region transcription start site region 13684
Tssr13685 1 133258540 to 133258553 13 - TSS region transcription start site region 13685
Tssr8799 1 133309778 to 133309829 51 + TSS region transcription start site region 8799
Golt1a 1 133309823 to 133323026 13203 + protein coding gene golgi transport 1A
Gm28040 1 133309827 to 133329722 19895 + protein coding gene predicted gene, 28040
D1Mit287 1 133318350 to 133318472 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 287
D1Mit287S 1 133318466 to 133318585 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-287S
Kiss1 1 133321887 to 133329722 7835 + protein coding gene KiSS-1 metastasis-suppressor
Tssr8800 1 133323963 to 133323967 4 + TSS region transcription start site region 8800
Cpgi745 1 133329045 to 133329763 718 CpG island CpG island 745
Tssr13686 1 133332268 to 133332270 2 - TSS region transcription start site region 13686
D1Mit472 1 133343504 to 133343643 139 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-472
D1Mit1011 1 133350256 to 133350435 179 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1011
Tssr212 1 133350285 to 133350300 15 + TSS region transcription start site region 212
D1Mit1010 1 133350302 to 133350435 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1010
D1Mit1012 1 133350512 to 133350690 178 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1012
Tssr8801 1 133350667 to 133350683 16 + TSS region transcription start site region 8801
Ren1 1 133350674 to 133360320 9646 + protein coding gene renin 1 structural
Tssr8802 1 133352510 to 133352529 19 + TSS region transcription start site region 8802
Tssr8803 1 133354210 to 133354239 29 + TSS region transcription start site region 8803
D1Mit31.1 1 133355183 to 133355292 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31.1
D1Mit31 1 133355274 to 133355443 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31
Tssr8804 1 133360254 to 133360265 11 + TSS region transcription start site region 8804
D1Mit30 1 133363098 to 133363199 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 30
Jckm4 1 133363098 to 133363199 101 QTL juvenile cystic kidney modifier 4
Jckm2 1 133363199 to 74952818 -58410381 QTL juvenile cystic kidney modifier 2
Cpgi746 1 133363386 to 133364497 1111 CpG island CpG island 746
Tssr8805 1 133363564 to 133363581 17 + TSS region transcription start site region 8805
Etnk2 1 133363572 to 133380336 16764 + protein coding gene ethanolamine kinase 2
Tssr8806 1 133363584 to 133363623 39 + TSS region transcription start site region 8806
Tssr8807 1 133363624 to 133363633 9 + TSS region transcription start site region 8807
Tssr8808 1 133363689 to 133363696 7 + TSS region transcription start site region 8808
Tssr8809 1 133363745 to 133363755 10 + TSS region transcription start site region 8809
Tssr8810 1 133363781 to 133363813 32 + TSS region transcription start site region 8810
Tssr8811 1 133363816 to 133363821 5 + TSS region transcription start site region 8811
Tssr8812 1 133363825 to 133363840 15 + TSS region transcription start site region 8812
Tssr8813 1 133365122 to 133365135 13 + TSS region transcription start site region 8813
Tssr8814 1 133365147 to 133365156 9 + TSS region transcription start site region 8814
Tssr8815 1 133365160 to 133365190 30 + TSS region transcription start site region 8815
D1Mit312S 1 133381125 to 133381277 152 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-312S
D1Mit312 1 133381325 to 133381432 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 312
Sox13 1 133382300 to 133424212 41912 - protein coding gene SRY (sex determining region Y)-box 13
Tssr13687 1 133382798 to 133382808 10 - TSS region transcription start site region 13687
Tssr213 1 133386080 to 133386124 44 - TSS region transcription start site region 213
Cpgi747 1 133388059 to 133388302 243 CpG island CpG island 747
Tssr13688 1 133422697 to 133422714 17 - TSS region transcription start site region 13688
Cpgi748 1 133422732 to 133424705 1973 CpG island CpG island 748
Tssr8816 1 133424310 to 133424320 10 + TSS region transcription start site region 8816
Tssr13689 1 133424385 to 133424404 19 - TSS region transcription start site region 13689
Tssr13690 1 133424412 to 133424466 54 - TSS region transcription start site region 13690
D1Mit348 1 133446105 to 133446248 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 348
D1Mit164 1 133480628 to 133480769 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 164
Cpgi749 1 133493014 to 133493238 224 CpG island CpG island 749
Tssr13691 1 133493428 to 133493441 13 - TSS region transcription start site region 13691
Gm8596 1 133529479 to 133530270 791 + pseudogene predicted gene 8596
Gm23939 1 133601223 to 133601355 132 + snoRNA gene predicted gene, 23939
Snrpe 1 133603871 to 133610280 6409 - protein coding gene small nuclear ribonucleoprotein E
Cpgi750 1 133609695 to 133610513 818 CpG island CpG island 750
Tssr13692 1 133610242 to 133610245 3 - TSS region transcription start site region 13692
Tssr13693 1 133610253 to 133610294 41 - TSS region transcription start site region 13693
Tssr8817 1 133610397 to 133610417 20 + TSS region transcription start site region 8817
Gm26706 1 133610411 to 133614422 4011 + lincRNA gene predicted gene, 26706
Zc3h11a 1 133619868 to 133661399 41531 - protein coding gene zinc finger CCCH type containing 11A
Gm38394 1 133619940 to 133661318 41378 - protein coding gene predicted gene, 38394