Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:133024755-135824775

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664 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdm4 1 132986105 to 133030587 44482 - protein coding gene transformed mouse 3T3 cell double minute 4
Cpgi738 1 133024956 to 133025509 553 CpG island CpG island 738
Tssr13676 1 133025330 to 133025391 61 - TSS region transcription start site region 13676
Gm29257 1 133025843 to 133026478 635 + pseudogene predicted gene 29257
Gm41953 1 133026733 to 133035870 9137 + lncRNA gene predicted gene, 41953
Tssr13677 1 133030580 to 133030586 6 - TSS region transcription start site region 13677
n-TKctt26 1 133033962 to 133034034 72 + tRNA gene nuclear encoded tRNA lysine 26 (anticodon TTT)
n-TKctt25 1 133034327 to 133034399 72 - tRNA gene nuclear encoded tRNA lysine 25 (anticodon TTT)
Cpgi739 1 133045626 to 133046921 1295 CpG island CpG island 739
Pik3c2b 1 133045672 to 133108691 63019 + protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
Tssr8760 1 133045984 to 133046082 98 + TSS region transcription start site region 8760
Tssr208 1 133046085 to 133046098 13 + TSS region transcription start site region 208
Tssr8761 1 133046143 to 133046162 19 + TSS region transcription start site region 8761
Tssr8762 1 133046164 to 133046187 23 + TSS region transcription start site region 8762
Tssr8763 1 133046191 to 133046206 15 + TSS region transcription start site region 8763
Gm28609 1 133050128 to 133068405 18277 - antisense lncRNA gene predicted gene 28609
Tssr8764 1 133053300 to 133053327 27 + TSS region transcription start site region 8764
Tssr13678 1 133068394 to 133068398 4 - TSS region transcription start site region 13678
Tssr8765 1 133068481 to 133068494 13 + TSS region transcription start site region 8765
Tssr8766 1 133068499 to 133068513 14 + TSS region transcription start site region 8766
Tssr13679 1 133071753 to 133071773 20 - TSS region transcription start site region 13679
Tssr8767 1 133084152 to 133084165 13 + TSS region transcription start site region 8767
Tssr8768 1 133092285 to 133092298 13 + TSS region transcription start site region 8768
Tssr209 1 133098644 to 133098655 11 + TSS region transcription start site region 209
Tssr8769 1 133103538 to 133103564 26 + TSS region transcription start site region 8769
Tssr8770 1 133108129 to 133108137 8 + TSS region transcription start site region 8770
Tssr8771 1 133108395 to 133108400 5 + TSS region transcription start site region 8771
Tssr13680 1 133118280 to 133118320 40 - TSS region transcription start site region 13680
Gm26616 1 133128676 to 133131782 3106 - protein coding gene predicted gene, 26616
Tssr8772 1 133129412 to 133129448 36 + TSS region transcription start site region 8772
Tssr8773 1 133130084 to 133130106 22 + TSS region transcription start site region 8773
Tssr8774 1 133130881 to 133130885 4 + TSS region transcription start site region 8774
Cpgi740 1 133130986 to 133132132 1146 CpG island CpG island 740
Ppp1r15b 1 133131166 to 133139800 8634 + protein coding gene protein phosphatase 1, regulatory subunit 15B
Tssr8775 1 133131239 to 133131254 15 + TSS region transcription start site region 8775
Tssr8776 1 133131267 to 133131283 16 + TSS region transcription start site region 8776
Tssr8777 1 133131288 to 133131364 76 + TSS region transcription start site region 8777
Tssr8778 1 133131369 to 133131382 13 + TSS region transcription start site region 8778
Tssr8779 1 133131408 to 133131437 29 + TSS region transcription start site region 8779
Tssr8780 1 133131451 to 133131473 22 + TSS region transcription start site region 8780
Tssr8781 1 133131809 to 133131824 15 + TSS region transcription start site region 8781
Tssr8782 1 133132222 to 133132235 13 + TSS region transcription start site region 8782
Cpgi741 1 133132379 to 133132607 228 CpG island CpG island 741
Tssr8783 1 133132648 to 133132666 18 + TSS region transcription start site region 8783
Tssr210 1 133133544 to 133133557 13 - TSS region transcription start site region 210
Tssr13681 1 133133578 to 133133585 7 - TSS region transcription start site region 13681
Tssr13682 1 133133598 to 133133606 8 - TSS region transcription start site region 13682
Cpgi742 1 133163654 to 133164825 1171 CpG island CpG island 742
Tssr8784 1 133163851 to 133163921 70 + TSS region transcription start site region 8784
Tssr211 1 133163934 to 133163945 11 + TSS region transcription start site region 211
Tssr8785 1 133163974 to 133164039 65 + TSS region transcription start site region 8785
Plekha6 1 133164210 to 133303435 139225 + protein coding gene pleckstrin homology domain containing, family A member 6
Tssr8786 1 133172948 to 133172951 3 + TSS region transcription start site region 8786
Tssr8787 1 133181340 to 133181404 64 + TSS region transcription start site region 8787
Cpgi743 1 133181422 to 133181699 277 CpG island CpG island 743
Cpgi744 1 133182333 to 133182899 566 CpG island CpG island 744
Tssr8788 1 133204677 to 133204709 32 + TSS region transcription start site region 8788
Tssr8789 1 133223040 to 133223048 8 + TSS region transcription start site region 8789
Tssr8790 1 133232025 to 133232050 25 + TSS region transcription start site region 8790
Tssr8791 1 133241183 to 133241213 30 + TSS region transcription start site region 8791
Tssr8792 1 133241217 to 133241260 43 + TSS region transcription start site region 8792
Tssr8793 1 133245888 to 133245905 17 + TSS region transcription start site region 8793
Tssr8794 1 133246092 to 133246099 7 + TSS region transcription start site region 8794
Gm19461 1 133250398 to 133269808 19410 - antisense lncRNA gene predicted gene, 19461
Tssr8795 1 133255244 to 133255248 4 + TSS region transcription start site region 8795
Tssr8796 1 133255679 to 133255728 49 + TSS region transcription start site region 8796
Tssr8797 1 133256082 to 133256099 17 + TSS region transcription start site region 8797
Tssr8798 1 133256113 to 133256155 42 + TSS region transcription start site region 8798
Tssr13683 1 133256322 to 133256345 23 - TSS region transcription start site region 13683
Tssr13684 1 133258506 to 133258514 8 - TSS region transcription start site region 13684
Tssr13685 1 133258540 to 133258553 13 - TSS region transcription start site region 13685
Tssr8799 1 133309778 to 133309829 51 + TSS region transcription start site region 8799
Golt1a 1 133309823 to 133323026 13203 + protein coding gene golgi transport 1A
Gm28040 1 133309827 to 133329722 19895 + protein coding gene predicted gene, 28040
D1Mit287 1 133318350 to 133318472 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 287
D1Mit287S 1 133318466 to 133318585 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-287S
Kiss1 1 133321887 to 133329722 7835 + protein coding gene KiSS-1 metastasis-suppressor
Tssr8800 1 133323963 to 133323967 4 + TSS region transcription start site region 8800
Cpgi745 1 133329045 to 133329763 718 CpG island CpG island 745
Tssr13686 1 133332268 to 133332270 2 - TSS region transcription start site region 13686
D1Mit472 1 133343504 to 133343643 139 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-472
D1Mit1011 1 133350256 to 133350435 179 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1011
Tssr212 1 133350285 to 133350300 15 + TSS region transcription start site region 212
D1Mit1010 1 133350302 to 133350435 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1010
D1Mit1012 1 133350512 to 133350690 178 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1012
Tssr8801 1 133350667 to 133350683 16 + TSS region transcription start site region 8801
Ren1 1 133350674 to 133360320 9646 + protein coding gene renin 1 structural
Tssr8802 1 133352510 to 133352529 19 + TSS region transcription start site region 8802
Tssr8803 1 133354210 to 133354239 29 + TSS region transcription start site region 8803
D1Mit31.1 1 133355183 to 133355292 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31.1
D1Mit31 1 133355274 to 133355443 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31
Tssr8804 1 133360254 to 133360265 11 + TSS region transcription start site region 8804
Jckm4 1 133363098 to 133363199 101 QTL juvenile cystic kidney modifier 4
D1Mit30 1 133363098 to 133363199 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 30
Jckm2 1 133363199 to 74952818 -58410381 QTL juvenile cystic kidney modifier 2
Cpgi746 1 133363386 to 133364497 1111 CpG island CpG island 746
Tssr8805 1 133363564 to 133363581 17 + TSS region transcription start site region 8805
Etnk2 1 133363572 to 133380336 16764 + protein coding gene ethanolamine kinase 2
Tssr8806 1 133363584 to 133363623 39 + TSS region transcription start site region 8806
Tssr8807 1 133363624 to 133363633 9 + TSS region transcription start site region 8807
Tssr8808 1 133363689 to 133363696 7 + TSS region transcription start site region 8808
Tssr8809 1 133363745 to 133363755 10 + TSS region transcription start site region 8809
Tssr8810 1 133363781 to 133363813 32 + TSS region transcription start site region 8810
Tssr8811 1 133363816 to 133363821 5 + TSS region transcription start site region 8811
Tssr8812 1 133363825 to 133363840 15 + TSS region transcription start site region 8812
Tssr8813 1 133365122 to 133365135 13 + TSS region transcription start site region 8813
Tssr8814 1 133365147 to 133365156 9 + TSS region transcription start site region 8814
Tssr8815 1 133365160 to 133365190 30 + TSS region transcription start site region 8815
D1Mit312S 1 133381125 to 133381277 152 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-312S
D1Mit312 1 133381325 to 133381432 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 312
Sox13 1 133382300 to 133424212 41912 - protein coding gene SRY (sex determining region Y)-box 13
Tssr13687 1 133382798 to 133382808 10 - TSS region transcription start site region 13687
Tssr213 1 133386080 to 133386124 44 - TSS region transcription start site region 213
Cpgi747 1 133388059 to 133388302 243 CpG island CpG island 747
Tssr13688 1 133422697 to 133422714 17 - TSS region transcription start site region 13688
Cpgi748 1 133422732 to 133424705 1973 CpG island CpG island 748
Tssr8816 1 133424310 to 133424320 10 + TSS region transcription start site region 8816
Tssr13689 1 133424385 to 133424404 19 - TSS region transcription start site region 13689
Tssr13690 1 133424412 to 133424466 54 - TSS region transcription start site region 13690
D1Mit348 1 133446105 to 133446248 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 348
D1Mit164 1 133480628 to 133480769 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 164
Cpgi749 1 133493014 to 133493238 224 CpG island CpG island 749
Tssr13691 1 133493428 to 133493441 13 - TSS region transcription start site region 13691
Gm8596 1 133529479 to 133530270 791 + pseudogene predicted gene 8596
Gm23939 1 133601223 to 133601355 132 + snoRNA gene predicted gene, 23939
Snrpe 1 133603871 to 133610280 6409 - protein coding gene small nuclear ribonucleoprotein E
Cpgi750 1 133609695 to 133610513 818 CpG island CpG island 750
Tssr13692 1 133610242 to 133610245 3 - TSS region transcription start site region 13692
Tssr13693 1 133610253 to 133610294 41 - TSS region transcription start site region 13693
Tssr8817 1 133610397 to 133610417 20 + TSS region transcription start site region 8817
Gm26706 1 133610411 to 133614422 4011 + lincRNA gene predicted gene, 26706
Zc3h11a 1 133619868 to 133661399 41531 - protein coding gene zinc finger CCCH type containing 11A
Gm38394 1 133619940 to 133661318 41378 - protein coding gene predicted gene, 38394
Tssr13694 1 133648878 to 133648883 5 - TSS region transcription start site region 13694
Tssr13695 1 133655159 to 133655169 10 - TSS region transcription start site region 13695
Zbed6 1 133655879 to 133660885 5006 - protein coding gene zinc finger, BED type containing 6
Cpgi751 1 133660477 to 133660726 249 CpG island CpG island 751
Tssr13696 1 133660806 to 133660818 12 - TSS region transcription start site region 13696
Tssr13697 1 133660823 to 133660844 21 - TSS region transcription start site region 13697
Cpgi752 1 133660873 to 133661562 689 CpG island CpG island 752
Tssr13698 1 133660949 to 133660974 25 - TSS region transcription start site region 13698
Tssr8818 1 133661031 to 133661054 23 + TSS region transcription start site region 8818
Tssr13699 1 133661345 to 133661386 41 - TSS region transcription start site region 13699
Tssr13700 1 133661387 to 133661399 12 - TSS region transcription start site region 13700
Tssr8819 1 133664410 to 133664419 9 + TSS region transcription start site region 8819
Tssr8820 1 133664420 to 133664442 22 + TSS region transcription start site region 8820
Tssr8821 1 133664444 to 133664464 20 + TSS region transcription start site region 8821
Tssr8822 1 133668007 to 133668025 18 + TSS region transcription start site region 8822
Tssr13701 1 133670445 to 133670464 19 - TSS region transcription start site region 13701
Lax1 1 133679091 to 133690108 11017 - protein coding gene lymphocyte transmembrane adaptor 1
Tssr13702 1 133689925 to 133689936 11 - TSS region transcription start site region 13702
Tssr13703 1 133689947 to 133689962 15 - TSS region transcription start site region 13703
Tssr13704 1 133690002 to 133690016 14 - TSS region transcription start site region 13704
Tssr13705 1 133690061 to 133690072 11 - TSS region transcription start site region 13705
Tssr13706 1 133690090 to 133690097 7 - TSS region transcription start site region 13706
Tssr13707 1 133690100 to 133690115 15 - TSS region transcription start site region 13707
Tssr8823 1 133694750 to 133694764 14 + TSS region transcription start site region 8823
Atp2b4 1 133702674 to 133801038 98364 - protein coding gene ATPase, Ca++ transporting, plasma membrane 4
Tssr13708 1 133719112 to 133719116 4 - TSS region transcription start site region 13708
Mir6903 1 133726558 to 133726645 87 - miRNA gene microRNA 6903
Cpgi753 1 133736231 to 133736405 174 CpG island CpG island 753
Tssr13709 1 133736365 to 133736414 49 - TSS region transcription start site region 13709
Tssr13710 1 133737986 to 133737990 4 - TSS region transcription start site region 13710
Tssr13711 1 133753486 to 133753535 49 - TSS region transcription start site region 13711
Tssr13712 1 133753838 to 133753857 19 - TSS region transcription start site region 13712
Tssr8824 1 133754893 to 133754895 2 + TSS region transcription start site region 8824
Gm37368 1 133775210 to 133778421 3211 - unclassified gene predicted gene, 37368
Cpgi754 1 133800674 to 133800897 223 CpG island CpG island 754
Tssr13713 1 133800964 to 133800973 9 - TSS region transcription start site region 13713
Tssr13714 1 133800975 to 133800986 11 - TSS region transcription start site region 13714
Tssr13715 1 133800996 to 133801023 27 - TSS region transcription start site region 13715
Tssr13716 1 133801031 to 133801038 7 - TSS region transcription start site region 13716
Cpgi755 1 133801050 to 133801228 178 CpG island CpG island 755
Tssr13717 1 133801057 to 133801066 9 - TSS region transcription start site region 13717
Tssr13718 1 133801183 to 133801185 2 - TSS region transcription start site region 13718
Tssr214 1 133801491 to 133801495 4 + TSS region transcription start site region 214
Gm10537 1 133829528 to 133831225 1697 + protein coding gene predicted gene 10537
Gm41954 1 133832595 to 133845212 12617 - lncRNA gene predicted gene, 41954
Gm28441 1 133835189 to 133838372 3183 + lincRNA gene predicted gene 28441
Gm31515 1 133859697 to 133891066 31369 + lncRNA gene predicted gene, 31515
Tssr8825 1 133880917 to 133880926 9 + TSS region transcription start site region 8825
Tssr8826 1 133880942 to 133880947 5 + TSS region transcription start site region 8826
Optc 1 133897199 to 133907999 10800 - protein coding gene opticin
Tssr13719 1 133899152 to 133899173 21 - TSS region transcription start site region 13719
Tssr13720 1 133899188 to 133899214 26 - TSS region transcription start site region 13720
Tssr13721 1 133899215 to 133899250 35 - TSS region transcription start site region 13721
Gm15851 1 133906531 to 133914822 8291 + antisense lncRNA gene predicted gene 15851
Tssr13722 1 133906954 to 133906960 6 - TSS region transcription start site region 13722
Tssr13723 1 133906973 to 133907014 41 - TSS region transcription start site region 13723
Tssr13724 1 133907053 to 133907062 9 - TSS region transcription start site region 13724
Cpgi756 1 133908416 to 133909100 684 CpG island CpG island 756
Prelp 1 133910304 to 133921414 11110 - protein coding gene proline arginine-rich end leucine-rich repeat
Tssr13725 1 133911035 to 133911049 14 - TSS region transcription start site region 13725
Tssr13726 1 133911496 to 133911508 12 - TSS region transcription start site region 13726
Tssr13727 1 133912321 to 133912343 22 - TSS region transcription start site region 13727
Tssr13728 1 133912426 to 133912449 23 - TSS region transcription start site region 13728
Tssr13729 1 133912535 to 133912547 12 - TSS region transcription start site region 13729
Tssr13730 1 133914621 to 133914631 10 - TSS region transcription start site region 13730
Tssr8827 1 133914637 to 133914669 32 + TSS region transcription start site region 8827
Tssr13731 1 133914697 to 133914717 20 - TSS region transcription start site region 13731