Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:132589879-133171701

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfasc 1 132564690 to 132741797 177107 - protein coding gene neurofascin
Tssr13658 1 132617008 to 132617012 4 - TSS region transcription start site region 13658
Tssr13659 1 132624473 to 132624490 17 - TSS region transcription start site region 13659
Tssr13660 1 132627044 to 132627048 4 - TSS region transcription start site region 13660
Tssr13661 1 132634205 to 132634222 17 - TSS region transcription start site region 13661
Tssr13662 1 132634690 to 132634693 3 - TSS region transcription start site region 13662
Gm46157 1 132665597 to 132679653 14056 + lncRNA gene predicted gene, 46157
Tssr13663 1 132707249 to 132707283 34 - TSS region transcription start site region 13663
Tssr13664 1 132707304 to 132707317 13 - TSS region transcription start site region 13664
Tssr13665 1 132707339 to 132707351 12 - TSS region transcription start site region 13665
Tssr8750 1 132729326 to 132729369 43 + TSS region transcription start site region 8750
Gm10538 1 132729355 to 132732826 3471 + antisense lncRNA gene predicted gene 10538
Cpgi734 1 132741179 to 132742065 886 CpG island CpG island 734
Tssr13666 1 132741750 to 132741806 56 - TSS region transcription start site region 13666
Cpgi735 1 132758720 to 132758936 216 CpG island CpG island 735
Gm31101 1 132787236 to 132787842 606 + lncRNA gene predicted gene, 31101
Gm22609 1 132814228 to 132814348 120 - snoRNA gene predicted gene, 22609
Tssr8751 1 132865812 to 132865823 11 + TSS region transcription start site region 8751
Tssr8752 1 132865828 to 132865839 11 + TSS region transcription start site region 8752
Tssr13667 1 132866801 to 132866814 13 - TSS region transcription start site region 13667
Cpgi736 1 132879879 to 132881701 1822 CpG island CpG island 736
Tssr8753 1 132880319 to 132880339 20 + TSS region transcription start site region 8753
Tssr8754 1 132880344 to 132880366 22 + TSS region transcription start site region 8754
Lrrn2 1 132880355 to 132940005 59650 + protein coding gene leucine rich repeat protein 2, neuronal
Tssr8755 1 132880400 to 132880454 54 + TSS region transcription start site region 8755
Tssr8756 1 132880506 to 132880517 11 + TSS region transcription start site region 8756
Gm31159 1 132914953 to 132924436 9483 - lncRNA gene predicted gene, 31159
Gm44300 1 132923624 to 132923744 120 - miRNA gene predicted gene, 44300
Cpgi737 1 132938210 to 132938751 541 CpG island CpG island 737
Gm38308 1 132943512 to 132945320 1808 - unclassified gene predicted gene, 38308
Tssr8757 1 132958050 to 132958055 5 + TSS region transcription start site region 8757
Gm38687 1 132961650 to 132971688 10038 - lncRNA gene predicted gene, 38687
Mdm4 1 132986105 to 133030587 44482 - protein coding gene transformed mouse 3T3 cell double minute 4
Tssr13668 1 133009639 to 133009643 4 - TSS region transcription start site region 13668
Tssr13669 1 133010687 to 133010727 40 - TSS region transcription start site region 13669
Tssr13670 1 133011868 to 133011871 3 - TSS region transcription start site region 13670
Tssr13671 1 133019388 to 133019407 19 - TSS region transcription start site region 13671
Tssr13672 1 133019410 to 133019419 9 - TSS region transcription start site region 13672
Tssr13673 1 133019425 to 133019448 23 - TSS region transcription start site region 13673
Tssr13674 1 133019480 to 133019496 16 - TSS region transcription start site region 13674
Tssr8758 1 133019655 to 133019668 13 + TSS region transcription start site region 8758
Tssr13675 1 133020250 to 133020273 23 - TSS region transcription start site region 13675
Tssr8759 1 133020349 to 133020381 32 + TSS region transcription start site region 8759
Cpgi738 1 133024956 to 133025509 553 CpG island CpG island 738
Tssr13676 1 133025330 to 133025391 61 - TSS region transcription start site region 13676
Gm29257 1 133025843 to 133026478 635 + pseudogene predicted gene 29257
Gm41953 1 133026733 to 133035870 9137 + lncRNA gene predicted gene, 41953
Tssr13677 1 133030580 to 133030586 6 - TSS region transcription start site region 13677
n-TKctt26 1 133033962 to 133034034 72 + tRNA gene nuclear encoded tRNA lysine 26 (anticodon TTT)
n-TKctt25 1 133034327 to 133034399 72 - tRNA gene nuclear encoded tRNA lysine 25 (anticodon TTT)
Cpgi739 1 133045626 to 133046921 1295 CpG island CpG island 739
Pik3c2b 1 133045672 to 133108691 63019 + protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
Tssr8760 1 133045984 to 133046082 98 + TSS region transcription start site region 8760
Tssr208 1 133046085 to 133046098 13 + TSS region transcription start site region 208
Tssr8761 1 133046143 to 133046162 19 + TSS region transcription start site region 8761
Tssr8762 1 133046164 to 133046187 23 + TSS region transcription start site region 8762
Tssr8763 1 133046191 to 133046206 15 + TSS region transcription start site region 8763
Gm28609 1 133050128 to 133068405 18277 - antisense lncRNA gene predicted gene 28609
Tssr8764 1 133053300 to 133053327 27 + TSS region transcription start site region 8764
Tssr13678 1 133068394 to 133068398 4 - TSS region transcription start site region 13678
Tssr8765 1 133068481 to 133068494 13 + TSS region transcription start site region 8765
Tssr8766 1 133068499 to 133068513 14 + TSS region transcription start site region 8766
Tssr13679 1 133071753 to 133071773 20 - TSS region transcription start site region 13679
Tssr8767 1 133084152 to 133084165 13 + TSS region transcription start site region 8767
Tssr8768 1 133092285 to 133092298 13 + TSS region transcription start site region 8768
Tssr209 1 133098644 to 133098655 11 + TSS region transcription start site region 209
Tssr8769 1 133103538 to 133103564 26 + TSS region transcription start site region 8769
Tssr8770 1 133108129 to 133108137 8 + TSS region transcription start site region 8770
Tssr8771 1 133108395 to 133108400 5 + TSS region transcription start site region 8771
Tssr13680 1 133118280 to 133118320 40 - TSS region transcription start site region 13680
Gm26616 1 133128676 to 133131782 3106 - protein coding gene predicted gene, 26616
Tssr8772 1 133129412 to 133129448 36 + TSS region transcription start site region 8772
Tssr8773 1 133130084 to 133130106 22 + TSS region transcription start site region 8773
Tssr8774 1 133130881 to 133130885 4 + TSS region transcription start site region 8774
Cpgi740 1 133130986 to 133132132 1146 CpG island CpG island 740
Ppp1r15b 1 133131166 to 133139800 8634 + protein coding gene protein phosphatase 1, regulatory subunit 15B
Tssr8775 1 133131239 to 133131254 15 + TSS region transcription start site region 8775
Tssr8776 1 133131267 to 133131283 16 + TSS region transcription start site region 8776
Tssr8777 1 133131288 to 133131364 76 + TSS region transcription start site region 8777
Tssr8778 1 133131369 to 133131382 13 + TSS region transcription start site region 8778
Tssr8779 1 133131408 to 133131437 29 + TSS region transcription start site region 8779
Tssr8780 1 133131451 to 133131473 22 + TSS region transcription start site region 8780
Tssr8781 1 133131809 to 133131824 15 + TSS region transcription start site region 8781
Tssr8782 1 133132222 to 133132235 13 + TSS region transcription start site region 8782
Cpgi741 1 133132379 to 133132607 228 CpG island CpG island 741
Tssr8783 1 133132648 to 133132666 18 + TSS region transcription start site region 8783
Tssr210 1 133133544 to 133133557 13 - TSS region transcription start site region 210
Tssr13681 1 133133578 to 133133585 7 - TSS region transcription start site region 13681
Tssr13682 1 133133598 to 133133606 8 - TSS region transcription start site region 13682
Cpgi742 1 133163654 to 133164825 1171 CpG island CpG island 742
Tssr8784 1 133163851 to 133163921 70 + TSS region transcription start site region 8784
Tssr211 1 133163934 to 133163945 11 + TSS region transcription start site region 211
Tssr8785 1 133163974 to 133164039 65 + TSS region transcription start site region 8785
Plekha6 1 133164210 to 133303435 139225 + protein coding gene pleckstrin homology domain containing, family A member 6