Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:132374879-133386701

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmcc2 1 132356315 to 132391281 34966 - protein coding gene transmembrane and coiled-coil domains 2
Cpgi728 1 132380659 to 132381038 379 CpG island CpG island 728
Gm15849 1 132381129 to 132382509 1380 + antisense lncRNA gene predicted gene 15849
Tssr13643 1 132384776 to 132384780 4 - TSS region transcription start site region 13643
Tssr13644 1 132390301 to 132390373 72 - TSS region transcription start site region 13644
Tssr13645 1 132390524 to 132390529 5 - TSS region transcription start site region 13645
Cpgi729 1 132390802 to 132392104 1302 CpG island CpG island 729
Tssr13646 1 132391658 to 132391682 24 - TSS region transcription start site region 13646
Tssr13647 1 132391697 to 132391762 65 - TSS region transcription start site region 13647
Tssr13648 1 132391767 to 132391805 38 - TSS region transcription start site region 13648
Tssr13649 1 132391806 to 132391822 16 - TSS region transcription start site region 13649
Cpgi730 1 132417221 to 132418218 997 CpG island CpG island 730
Tssr8744 1 132417377 to 132417402 25 + TSS region transcription start site region 8744
Tssr8745 1 132417409 to 132417464 55 + TSS region transcription start site region 8745
Tssr8746 1 132417555 to 132417609 54 + TSS region transcription start site region 8746
Dstyk 1 132417555 to 132466958 49403 + protein coding gene dual serine/threonine and tyrosine protein kinase
Tssr13650 1 132417970 to 132417980 10 - TSS region transcription start site region 13650
Tssr13651 1 132465910 to 132465914 4 - TSS region transcription start site region 13651
6030442K20Rik 1 132466433 to 132477064 10631 - unclassified gene RIKEN cDNA 6030442K20 gene
Tssr8747 1 132470264 to 132470275 11 + TSS region transcription start site region 8747
Cpgi731 1 132476966 to 132477702 736 CpG island CpG island 731
Tssr8748 1 132477361 to 132477412 51 + TSS region transcription start site region 8748
Rbbp5 1 132477365 to 132505659 28294 + protein coding gene retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit
Tmem81 1 132506230 to 132508639 2409 + protein coding gene transmembrane protein 81
Tssr8749 1 132506247 to 132506259 12 + TSS region transcription start site region 8749
Cntn2 1 132509425 to 132543251 33826 - protein coding gene contactin 2
Cpgi732 1 132518719 to 132518902 183 CpG island CpG island 732
Tssr13652 1 132523681 to 132523706 25 - TSS region transcription start site region 13652
Tssr13653 1 132529021 to 132529025 4 - TSS region transcription start site region 13653
Cpgi733 1 132542696 to 132543112 416 CpG island CpG island 733
Tssr13654 1 132542857 to 132542878 21 - TSS region transcription start site region 13654
Tssr13655 1 132542882 to 132542906 24 - TSS region transcription start site region 13655
Tssr13656 1 132542934 to 132542954 20 - TSS region transcription start site region 13656
Nfasc 1 132564690 to 132741797 177107 - protein coding gene neurofascin
Tssr13657 1 132567003 to 132567016 13 - TSS region transcription start site region 13657
Tssr13658 1 132617008 to 132617012 4 - TSS region transcription start site region 13658
Tssr13659 1 132624473 to 132624490 17 - TSS region transcription start site region 13659
Tssr13660 1 132627044 to 132627048 4 - TSS region transcription start site region 13660
Tssr13661 1 132634205 to 132634222 17 - TSS region transcription start site region 13661
Tssr13662 1 132634690 to 132634693 3 - TSS region transcription start site region 13662
Gm46157 1 132665597 to 132679653 14056 + lncRNA gene predicted gene, 46157
Tssr13663 1 132707249 to 132707283 34 - TSS region transcription start site region 13663
Tssr13664 1 132707304 to 132707317 13 - TSS region transcription start site region 13664
Tssr13665 1 132707339 to 132707351 12 - TSS region transcription start site region 13665
Tssr8750 1 132729326 to 132729369 43 + TSS region transcription start site region 8750
Gm10538 1 132729355 to 132732826 3471 + antisense lncRNA gene predicted gene 10538
Cpgi734 1 132741179 to 132742065 886 CpG island CpG island 734
Tssr13666 1 132741750 to 132741806 56 - TSS region transcription start site region 13666
Cpgi735 1 132758720 to 132758936 216 CpG island CpG island 735
Gm31101 1 132787236 to 132787842 606 + lncRNA gene predicted gene, 31101
Gm22609 1 132814228 to 132814348 120 - snoRNA gene predicted gene, 22609
Tssr8751 1 132865812 to 132865823 11 + TSS region transcription start site region 8751
Tssr8752 1 132865828 to 132865839 11 + TSS region transcription start site region 8752
Tssr13667 1 132866801 to 132866814 13 - TSS region transcription start site region 13667
Cpgi736 1 132879879 to 132881701 1822 CpG island CpG island 736
Tssr8753 1 132880319 to 132880339 20 + TSS region transcription start site region 8753
Tssr8754 1 132880344 to 132880366 22 + TSS region transcription start site region 8754
Lrrn2 1 132880355 to 132940005 59650 + protein coding gene leucine rich repeat protein 2, neuronal
Tssr8755 1 132880400 to 132880454 54 + TSS region transcription start site region 8755
Tssr8756 1 132880506 to 132880517 11 + TSS region transcription start site region 8756
Gm31159 1 132914953 to 132924436 9483 - lncRNA gene predicted gene, 31159
Gm44300 1 132923624 to 132923744 120 - miRNA gene predicted gene, 44300
Cpgi737 1 132938210 to 132938751 541 CpG island CpG island 737
Gm38308 1 132943512 to 132945320 1808 - unclassified gene predicted gene, 38308
Tssr8757 1 132958050 to 132958055 5 + TSS region transcription start site region 8757
Gm38687 1 132961650 to 132971688 10038 - lncRNA gene predicted gene, 38687
Mdm4 1 132986105 to 133030587 44482 - protein coding gene transformed mouse 3T3 cell double minute 4
Tssr13668 1 133009639 to 133009643 4 - TSS region transcription start site region 13668
Tssr13669 1 133010687 to 133010727 40 - TSS region transcription start site region 13669
Tssr13670 1 133011868 to 133011871 3 - TSS region transcription start site region 13670
Tssr13671 1 133019388 to 133019407 19 - TSS region transcription start site region 13671
Tssr13672 1 133019410 to 133019419 9 - TSS region transcription start site region 13672
Tssr13673 1 133019425 to 133019448 23 - TSS region transcription start site region 13673
Tssr13674 1 133019480 to 133019496 16 - TSS region transcription start site region 13674
Tssr8758 1 133019655 to 133019668 13 + TSS region transcription start site region 8758
Tssr13675 1 133020250 to 133020273 23 - TSS region transcription start site region 13675
Tssr8759 1 133020349 to 133020381 32 + TSS region transcription start site region 8759
Cpgi738 1 133024956 to 133025509 553 CpG island CpG island 738
Tssr13676 1 133025330 to 133025391 61 - TSS region transcription start site region 13676
Gm29257 1 133025843 to 133026478 635 + pseudogene predicted gene 29257
Gm41953 1 133026733 to 133035870 9137 + lncRNA gene predicted gene, 41953
Tssr13677 1 133030580 to 133030586 6 - TSS region transcription start site region 13677
n-TKctt26 1 133033962 to 133034034 72 + tRNA gene nuclear encoded tRNA lysine 26 (anticodon TTT)
n-TKctt25 1 133034327 to 133034399 72 - tRNA gene nuclear encoded tRNA lysine 25 (anticodon TTT)
Cpgi739 1 133045626 to 133046921 1295 CpG island CpG island 739
Pik3c2b 1 133045672 to 133108691 63019 + protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
Tssr8760 1 133045984 to 133046082 98 + TSS region transcription start site region 8760
Tssr208 1 133046085 to 133046098 13 + TSS region transcription start site region 208
Tssr8761 1 133046143 to 133046162 19 + TSS region transcription start site region 8761
Tssr8762 1 133046164 to 133046187 23 + TSS region transcription start site region 8762
Tssr8763 1 133046191 to 133046206 15 + TSS region transcription start site region 8763
Gm28609 1 133050128 to 133068405 18277 - antisense lncRNA gene predicted gene 28609
Tssr8764 1 133053300 to 133053327 27 + TSS region transcription start site region 8764
Tssr13678 1 133068394 to 133068398 4 - TSS region transcription start site region 13678
Tssr8765 1 133068481 to 133068494 13 + TSS region transcription start site region 8765
Tssr8766 1 133068499 to 133068513 14 + TSS region transcription start site region 8766
Tssr13679 1 133071753 to 133071773 20 - TSS region transcription start site region 13679
Tssr8767 1 133084152 to 133084165 13 + TSS region transcription start site region 8767
Tssr8768 1 133092285 to 133092298 13 + TSS region transcription start site region 8768
Tssr209 1 133098644 to 133098655 11 + TSS region transcription start site region 209
Tssr8769 1 133103538 to 133103564 26 + TSS region transcription start site region 8769
Tssr8770 1 133108129 to 133108137 8 + TSS region transcription start site region 8770
Tssr8771 1 133108395 to 133108400 5 + TSS region transcription start site region 8771
Tssr13680 1 133118280 to 133118320 40 - TSS region transcription start site region 13680
Gm26616 1 133128676 to 133131782 3106 - protein coding gene predicted gene, 26616
Tssr8772 1 133129412 to 133129448 36 + TSS region transcription start site region 8772
Tssr8773 1 133130084 to 133130106 22 + TSS region transcription start site region 8773
Tssr8774 1 133130881 to 133130885 4 + TSS region transcription start site region 8774
Cpgi740 1 133130986 to 133132132 1146 CpG island CpG island 740
Ppp1r15b 1 133131166 to 133139800 8634 + protein coding gene protein phosphatase 1, regulatory subunit 15B
Tssr8775 1 133131239 to 133131254 15 + TSS region transcription start site region 8775
Tssr8776 1 133131267 to 133131283 16 + TSS region transcription start site region 8776
Tssr8777 1 133131288 to 133131364 76 + TSS region transcription start site region 8777
Tssr8778 1 133131369 to 133131382 13 + TSS region transcription start site region 8778
Tssr8779 1 133131408 to 133131437 29 + TSS region transcription start site region 8779
Tssr8780 1 133131451 to 133131473 22 + TSS region transcription start site region 8780
Tssr8781 1 133131809 to 133131824 15 + TSS region transcription start site region 8781
Tssr8782 1 133132222 to 133132235 13 + TSS region transcription start site region 8782
Cpgi741 1 133132379 to 133132607 228 CpG island CpG island 741
Tssr8783 1 133132648 to 133132666 18 + TSS region transcription start site region 8783
Tssr210 1 133133544 to 133133557 13 - TSS region transcription start site region 210
Tssr13681 1 133133578 to 133133585 7 - TSS region transcription start site region 13681
Tssr13682 1 133133598 to 133133606 8 - TSS region transcription start site region 13682
Cpgi742 1 133163654 to 133164825 1171 CpG island CpG island 742
Tssr8784 1 133163851 to 133163921 70 + TSS region transcription start site region 8784
Tssr211 1 133163934 to 133163945 11 + TSS region transcription start site region 211
Tssr8785 1 133163974 to 133164039 65 + TSS region transcription start site region 8785
Plekha6 1 133164210 to 133303435 139225 + protein coding gene pleckstrin homology domain containing, family A member 6
Tssr8786 1 133172948 to 133172951 3 + TSS region transcription start site region 8786
Tssr8787 1 133181340 to 133181404 64 + TSS region transcription start site region 8787
Cpgi743 1 133181422 to 133181699 277 CpG island CpG island 743
Cpgi744 1 133182333 to 133182899 566 CpG island CpG island 744
Tssr8788 1 133204677 to 133204709 32 + TSS region transcription start site region 8788
Tssr8789 1 133223040 to 133223048 8 + TSS region transcription start site region 8789
Tssr8790 1 133232025 to 133232050 25 + TSS region transcription start site region 8790
Tssr8791 1 133241183 to 133241213 30 + TSS region transcription start site region 8791
Tssr8792 1 133241217 to 133241260 43 + TSS region transcription start site region 8792
Tssr8793 1 133245888 to 133245905 17 + TSS region transcription start site region 8793
Tssr8794 1 133246092 to 133246099 7 + TSS region transcription start site region 8794
Gm19461 1 133250398 to 133269808 19410 - antisense lncRNA gene predicted gene, 19461
Tssr8795 1 133255244 to 133255248 4 + TSS region transcription start site region 8795
Tssr8796 1 133255679 to 133255728 49 + TSS region transcription start site region 8796
Tssr8797 1 133256082 to 133256099 17 + TSS region transcription start site region 8797
Tssr8798 1 133256113 to 133256155 42 + TSS region transcription start site region 8798
Tssr13683 1 133256322 to 133256345 23 - TSS region transcription start site region 13683
Tssr13684 1 133258506 to 133258514 8 - TSS region transcription start site region 13684
Tssr13685 1 133258540 to 133258553 13 - TSS region transcription start site region 13685
Tssr8799 1 133309778 to 133309829 51 + TSS region transcription start site region 8799
Golt1a 1 133309823 to 133323026 13203 + protein coding gene golgi transport 1A
Gm28040 1 133309827 to 133329722 19895 + protein coding gene predicted gene, 28040
D1Mit287 1 133318350 to 133318472 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 287
D1Mit287S 1 133318466 to 133318585 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-287S
Kiss1 1 133321887 to 133329722 7835 + protein coding gene KiSS-1 metastasis-suppressor
Tssr8800 1 133323963 to 133323967 4 + TSS region transcription start site region 8800
Cpgi745 1 133329045 to 133329763 718 CpG island CpG island 745
Tssr13686 1 133332268 to 133332270 2 - TSS region transcription start site region 13686
D1Mit472 1 133343504 to 133343643 139 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-472
D1Mit1011 1 133350256 to 133350435 179 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1011
Tssr212 1 133350285 to 133350300 15 + TSS region transcription start site region 212
D1Mit1010 1 133350302 to 133350435 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1010
D1Mit1012 1 133350512 to 133350690 178 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1012
Tssr8801 1 133350667 to 133350683 16 + TSS region transcription start site region 8801
Ren1 1 133350674 to 133360320 9646 + protein coding gene renin 1 structural
Tssr8802 1 133352510 to 133352529 19 + TSS region transcription start site region 8802
Tssr8803 1 133354210 to 133354239 29 + TSS region transcription start site region 8803
D1Mit31.1 1 133355183 to 133355292 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31.1
D1Mit31 1 133355274 to 133355443 169 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 31
Tssr8804 1 133360254 to 133360265 11 + TSS region transcription start site region 8804
D1Mit30 1 133363098 to 133363199 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 30
Jckm4 1 133363098 to 133363199 101 QTL juvenile cystic kidney modifier 4
Jckm2 1 133363199 to 74952818 -58410381 QTL juvenile cystic kidney modifier 2
Cpgi746 1 133363386 to 133364497 1111 CpG island CpG island 746
Tssr8805 1 133363564 to 133363581 17 + TSS region transcription start site region 8805
Etnk2 1 133363572 to 133380336 16764 + protein coding gene ethanolamine kinase 2
Tssr8806 1 133363584 to 133363623 39 + TSS region transcription start site region 8806
Tssr8807 1 133363624 to 133363633 9 + TSS region transcription start site region 8807
Tssr8808 1 133363689 to 133363696 7 + TSS region transcription start site region 8808
Tssr8809 1 133363745 to 133363755 10 + TSS region transcription start site region 8809
Tssr8810 1 133363781 to 133363813 32 + TSS region transcription start site region 8810
Tssr8811 1 133363816 to 133363821 5 + TSS region transcription start site region 8811
Tssr8812 1 133363825 to 133363840 15 + TSS region transcription start site region 8812
Tssr8813 1 133365122 to 133365135 13 + TSS region transcription start site region 8813
Tssr8814 1 133365147 to 133365156 9 + TSS region transcription start site region 8814
Tssr8815 1 133365160 to 133365190 30 + TSS region transcription start site region 8815
D1Mit312S 1 133381125 to 133381277 152 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-312S
D1Mit312 1 133381325 to 133381432 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 312
Sox13 1 133382300 to 133424212 41912 - protein coding gene SRY (sex determining region Y)-box 13
Tssr13687 1 133382798 to 133382808 10 - TSS region transcription start site region 13687
Tssr213 1 133386080 to 133386124 44 - TSS region transcription start site region 213