Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:131964666-132314692

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29103 1 131962954 to 132014486 51532 + unclassified non-coding RNA gene predicted gene 29103
Slc45a3 1 131962967 to 131982969 20002 + protein coding gene solute carrier family 45, member 3
Tssr8697 1 131969908 to 131969912 4 + TSS region transcription start site region 8697
Tssr8698 1 131970555 to 131970572 17 + TSS region transcription start site region 8698
Tssr8699 1 131970589 to 131970601 12 + TSS region transcription start site region 8699
Tssr8700 1 131974293 to 131974341 48 + TSS region transcription start site region 8700
Tssr13612 1 132007170 to 132007175 5 - TSS region transcription start site region 13612
Cpgi719 1 132007230 to 132008574 1344 CpG island CpG island 719
Tssr8701 1 132007378 to 132007392 14 + TSS region transcription start site region 8701
Tssr203 1 132007395 to 132007418 23 + TSS region transcription start site region 203
Tssr204 1 132007466 to 132007478 12 - TSS region transcription start site region 204
Tssr13613 1 132007480 to 132007503 23 - TSS region transcription start site region 13613
Tssr8702 1 132007554 to 132007591 37 + TSS region transcription start site region 8702
Elk4 1 132007605 to 132026448 18843 + protein coding gene ELK4, member of ETS oncogene family
Tssr8703 1 132007606 to 132007634 28 + TSS region transcription start site region 8703
Tssr8704 1 132007640 to 132007673 33 + TSS region transcription start site region 8704
Tssr205 1 132007889 to 132007903 14 - TSS region transcription start site region 205
Tssr206 1 132007906 to 132007917 11 - TSS region transcription start site region 206
Tssr13614 1 132007919 to 132007943 24 - TSS region transcription start site region 13614
Tssr13615 1 132008002 to 132008054 52 - TSS region transcription start site region 13615
Tssr8705 1 132008093 to 132008154 61 + TSS region transcription start site region 8705
Tssr8706 1 132008285 to 132008316 31 + TSS region transcription start site region 8706
Tssr8707 1 132008324 to 132008357 33 + TSS region transcription start site region 8707
Tssr8708 1 132008369 to 132008397 28 + TSS region transcription start site region 8708
Tssr207 1 132008547 to 132008584 37 + TSS region transcription start site region 207
Tssr8709 1 132008860 to 132008885 25 + TSS region transcription start site region 8709
Tssr8710 1 132008900 to 132008910 10 + TSS region transcription start site region 8710
Tssr13616 1 132010605 to 132010608 3 - TSS region transcription start site region 13616
Tssr8711 1 132014522 to 132014535 13 + TSS region transcription start site region 8711
Tssr8712 1 132017749 to 132017769 20 + TSS region transcription start site region 8712
Mfsd4a 1 132022806 to 132068062 45256 - protein coding gene major facilitator superfamily domain containing 4A
Tssr8713 1 132023880 to 132023885 5 + TSS region transcription start site region 8713
Tssr8714 1 132030768 to 132030793 25 + TSS region transcription start site region 8714
Gm26892 1 132036805 to 132067945 31140 + lincRNA gene predicted gene, 26892
Tssr13617 1 132041954 to 132041957 3 - TSS region transcription start site region 13617
Tssr8715 1 132065762 to 132065764 2 + TSS region transcription start site region 8715
Cpgi720 1 132067326 to 132068342 1016 CpG island CpG island 720
Tssr13618 1 132067903 to 132067913 10 - TSS region transcription start site region 13618
Tssr13619 1 132067924 to 132067948 24 - TSS region transcription start site region 13619
Tssr13620 1 132067956 to 132067974 18 - TSS region transcription start site region 13620
Tssr13621 1 132068013 to 132068025 12 - TSS region transcription start site region 13621
4833413N01Rik 1 132073785 to 132080176 6391 + lncRNA gene RIKEN cDNA 4833413N01 gene
Gm26034 1 132100639 to 132100754 115 + snRNA gene predicted gene, 26034
Gm37120 1 132102597 to 132106362 3765 + lncRNA gene predicted gene, 37120
Cdk18 1 132113547 to 132139957 26410 - protein coding gene cyclin-dependent kinase 18
Tssr8716 1 132114893 to 132114927 34 + TSS region transcription start site region 8716
Tssr8717 1 132116596 to 132116612 16 + TSS region transcription start site region 8717
Tssr13622 1 132116626 to 132116658 32 - TSS region transcription start site region 13622
Cpgi721 1 132116653 to 132116871 218 CpG island CpG island 721
Tssr13623 1 132116908 to 132116915 7 - TSS region transcription start site region 13623
Tssr13624 1 132116939 to 132116951 12 - TSS region transcription start site region 13624
Tssr13625 1 132116966 to 132116984 18 - TSS region transcription start site region 13625
Tssr13626 1 132131843 to 132131878 35 - TSS region transcription start site region 13626
Cpgi722 1 132138751 to 132139830 1079 CpG island CpG island 722
Gm29629 1 132139504 to 132142800 3296 + antisense lncRNA gene predicted gene 29629
Tssr13627 1 132139638 to 132139645 7 - TSS region transcription start site region 13627
Tssr13628 1 132139648 to 132139657 9 - TSS region transcription start site region 13628
Tssr13629 1 132139666 to 132139692 26 - TSS region transcription start site region 13629
Tssr8718 1 132143374 to 132143386 12 + TSS region transcription start site region 8718
Tssr8719 1 132143394 to 132143405 11 + TSS region transcription start site region 8719
Gm30153 1 132144755 to 132145520 765 - lncRNA gene predicted gene, 30153
Gm30242 1 132149403 to 132154142 4739 + lncRNA gene predicted gene, 30242
Cpgi723 1 132189910 to 132191803 1893 CpG island CpG island 723
Gm29695 1 132190089 to 132209547 19458 + lncRNA gene predicted gene, 29695
Tssr8720 1 132190413 to 132190438 25 + TSS region transcription start site region 8720
Lemd1 1 132190623 to 132257382 66759 + protein coding gene LEM domain containing 1
Tssr13630 1 132192018 to 132192031 13 - TSS region transcription start site region 13630
Mir135b 1 132198088 to 132198184 96 + miRNA gene microRNA 135b
Tssr13631 1 132200310 to 132200315 5 - TSS region transcription start site region 13631
1700037F24Rik 1 132201069 to 132203803 2734 - lincRNA gene RIKEN cDNA 1700037F24 gene
Cpgi724 1 132212410 to 132212582 172 CpG island CpG island 724
Tssr13632 1 132226150 to 132226190 40 - TSS region transcription start site region 13632
Tssr8721 1 132226313 to 132226348 35 + TSS region transcription start site region 8721
Gm10188 1 132229048 to 132229767 719 - protein coding gene predicted gene 10188
Tssr8722 1 132265989 to 132265993 4 + TSS region transcription start site region 8722
Gm29630 1 132274716 to 132280411 5695 - lincRNA gene predicted gene 29630
Gm38446 1 132278515 to 132291366 12851 - lncRNA gene predicted gene, 38446
Gm7241 1 132284453 to 132284809 356 + pseudogene predicted pseudogene 7241
Cpgi725 1 132298342 to 132299699 1357 CpG island CpG island 725
Tssr8723 1 132298498 to 132298505 7 + TSS region transcription start site region 8723
Tssr8724 1 132298550 to 132298561 11 + TSS region transcription start site region 8724
Tssr8725 1 132298570 to 132298600 30 + TSS region transcription start site region 8725
Tssr8726 1 132298606 to 132298631 25 + TSS region transcription start site region 8726
Klhdc8a 1 132298626 to 132307357 8731 + protein coding gene kelch domain containing 8A
Tssr8727 1 132298632 to 132298649 17 + TSS region transcription start site region 8727
Tssr8728 1 132298652 to 132298659 7 + TSS region transcription start site region 8728
Tssr8729 1 132298663 to 132298674 11 + TSS region transcription start site region 8729
Tssr8730 1 132299032 to 132299070 38 + TSS region transcription start site region 8730
Tssr8731 1 132299302 to 132299312 10 + TSS region transcription start site region 8731
Tssr8732 1 132299336 to 132299349 13 + TSS region transcription start site region 8732
Tssr8733 1 132302893 to 132302899 6 + TSS region transcription start site region 8733