Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:131872378-132142392

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab29 1 131867224 to 131872887 5663 + protein coding gene RAB29, member RAS oncogene family
Gm29105 1 131907165 to 131907954 789 + pseudogene predicted gene 29105
Cpgi717 1 131910228 to 131911647 1419 CpG island CpG island 717
Tssr13608 1 131910265 to 131910274 9 - TSS region transcription start site region 13608
Tssr8686 1 131910483 to 131910539 56 + TSS region transcription start site region 8686
Nucks1 1 131910534 to 131936321 25787 + protein coding gene nuclear casein kinase and cyclin-dependent kinase substrate 1
Tssr8687 1 131910558 to 131910572 14 + TSS region transcription start site region 8687
Tssr8688 1 131910679 to 131910702 23 + TSS region transcription start site region 8688
Tssr13609 1 131910850 to 131910867 17 - TSS region transcription start site region 13609
Tssr13610 1 131911107 to 131911125 18 - TSS region transcription start site region 13610
Tssr13611 1 131911126 to 131911145 19 - TSS region transcription start site region 13611
Gm38067 1 131914529 to 131916439 1910 + unclassified gene predicted gene, 38067
Tssr8689 1 131919009 to 131919022 13 + TSS region transcription start site region 8689
Tssr8690 1 131932019 to 131932037 18 + TSS region transcription start site region 8690
Tssr8691 1 131932045 to 131932052 7 + TSS region transcription start site region 8691
Tssr8692 1 131932071 to 131932085 14 + TSS region transcription start site region 8692
Tssr8693 1 131932118 to 131932134 16 + TSS region transcription start site region 8693
Gm37676 1 131932464 to 131932970 506 - unclassified gene predicted gene, 37676
Tssr8694 1 131935289 to 131935313 24 + TSS region transcription start site region 8694
D1Mit497 1 131958404 to 131958513 109 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 497
Cpgi718 1 131962497 to 131964047 1550 CpG island CpG island 718
Tssr8695 1 131962941 to 131962969 28 + TSS region transcription start site region 8695
Gm29103 1 131962954 to 132014486 51532 + unclassified non-coding RNA gene predicted gene 29103
Slc45a3 1 131962967 to 131982969 20002 + protein coding gene solute carrier family 45, member 3
Tssr8696 1 131962987 to 131963001 14 + TSS region transcription start site region 8696
Tssr8697 1 131969908 to 131969912 4 + TSS region transcription start site region 8697
Tssr8698 1 131970555 to 131970572 17 + TSS region transcription start site region 8698
Tssr8699 1 131970589 to 131970601 12 + TSS region transcription start site region 8699
Tssr8700 1 131974293 to 131974341 48 + TSS region transcription start site region 8700
Tssr13612 1 132007170 to 132007175 5 - TSS region transcription start site region 13612
Cpgi719 1 132007230 to 132008574 1344 CpG island CpG island 719
Tssr8701 1 132007378 to 132007392 14 + TSS region transcription start site region 8701
Tssr203 1 132007395 to 132007418 23 + TSS region transcription start site region 203
Tssr204 1 132007466 to 132007478 12 - TSS region transcription start site region 204
Tssr13613 1 132007480 to 132007503 23 - TSS region transcription start site region 13613
Tssr8702 1 132007554 to 132007591 37 + TSS region transcription start site region 8702
Elk4 1 132007605 to 132026448 18843 + protein coding gene ELK4, member of ETS oncogene family
Tssr8703 1 132007606 to 132007634 28 + TSS region transcription start site region 8703
Tssr8704 1 132007640 to 132007673 33 + TSS region transcription start site region 8704
Tssr205 1 132007889 to 132007903 14 - TSS region transcription start site region 205
Tssr206 1 132007906 to 132007917 11 - TSS region transcription start site region 206
Tssr13614 1 132007919 to 132007943 24 - TSS region transcription start site region 13614
Tssr13615 1 132008002 to 132008054 52 - TSS region transcription start site region 13615
Tssr8705 1 132008093 to 132008154 61 + TSS region transcription start site region 8705
Tssr8706 1 132008285 to 132008316 31 + TSS region transcription start site region 8706
Tssr8707 1 132008324 to 132008357 33 + TSS region transcription start site region 8707
Tssr8708 1 132008369 to 132008397 28 + TSS region transcription start site region 8708
Tssr207 1 132008547 to 132008584 37 + TSS region transcription start site region 207
Tssr8709 1 132008860 to 132008885 25 + TSS region transcription start site region 8709
Tssr8710 1 132008900 to 132008910 10 + TSS region transcription start site region 8710
Tssr13616 1 132010605 to 132010608 3 - TSS region transcription start site region 13616
Tssr8711 1 132014522 to 132014535 13 + TSS region transcription start site region 8711
Tssr8712 1 132017749 to 132017769 20 + TSS region transcription start site region 8712
Mfsd4a 1 132022806 to 132068062 45256 - protein coding gene major facilitator superfamily domain containing 4A
Tssr8713 1 132023880 to 132023885 5 + TSS region transcription start site region 8713
Tssr8714 1 132030768 to 132030793 25 + TSS region transcription start site region 8714
Gm26892 1 132036805 to 132067945 31140 + lincRNA gene predicted gene, 26892
Tssr13617 1 132041954 to 132041957 3 - TSS region transcription start site region 13617
Tssr8715 1 132065762 to 132065764 2 + TSS region transcription start site region 8715
Cpgi720 1 132067326 to 132068342 1016 CpG island CpG island 720
Tssr13618 1 132067903 to 132067913 10 - TSS region transcription start site region 13618
Tssr13619 1 132067924 to 132067948 24 - TSS region transcription start site region 13619
Tssr13620 1 132067956 to 132067974 18 - TSS region transcription start site region 13620
Tssr13621 1 132068013 to 132068025 12 - TSS region transcription start site region 13621
4833413N01Rik 1 132073785 to 132080176 6391 + lncRNA gene RIKEN cDNA 4833413N01 gene
Gm26034 1 132100639 to 132100754 115 + snRNA gene predicted gene, 26034
Gm37120 1 132102597 to 132106362 3765 + lncRNA gene predicted gene, 37120
Cdk18 1 132113547 to 132139957 26410 - protein coding gene cyclin-dependent kinase 18
Tssr8716 1 132114893 to 132114927 34 + TSS region transcription start site region 8716
Tssr8717 1 132116596 to 132116612 16 + TSS region transcription start site region 8717
Tssr13622 1 132116626 to 132116658 32 - TSS region transcription start site region 13622
Cpgi721 1 132116653 to 132116871 218 CpG island CpG island 721
Tssr13623 1 132116908 to 132116915 7 - TSS region transcription start site region 13623
Tssr13624 1 132116939 to 132116951 12 - TSS region transcription start site region 13624
Tssr13625 1 132116966 to 132116984 18 - TSS region transcription start site region 13625
Tssr13626 1 132131843 to 132131878 35 - TSS region transcription start site region 13626
Cpgi722 1 132138751 to 132139830 1079 CpG island CpG island 722
Gm29629 1 132139504 to 132142800 3296 + antisense lncRNA gene predicted gene 29629
Tssr13627 1 132139638 to 132139645 7 - TSS region transcription start site region 13627
Tssr13628 1 132139648 to 132139657 9 - TSS region transcription start site region 13628
Tssr13629 1 132139666 to 132139692 26 - TSS region transcription start site region 13629