Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:131223354-132053363

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rassf5 1 131176410 to 131245178 68768 - protein coding gene Ras association (RalGDS/AF-6) domain family member 5
D1Mit193 1 131228571 to 131228693 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 193
Ity3 1 131228571 to 165311895 34083324 QTL immunity to S. typhimurium 3
Tssr13566 1 131233660 to 131233679 19 - TSS region transcription start site region 13566
Cpgi709 1 131244097 to 131245843 1746 CpG island CpG island 709
Tssr13567 1 131245167 to 131245185 18 - TSS region transcription start site region 13567
Tssr8625 1 131245323 to 131245334 11 + TSS region transcription start site region 8625
Ikbke 1 131254600 to 131279629 25029 - protein coding gene inhibitor of kappaB kinase epsilon
Gm28914 1 131259507 to 131260553 1046 + antisense lncRNA gene predicted gene 28914
Gm28913 1 131263330 to 131266749 3419 + antisense lncRNA gene predicted gene 28913
Tssr13568 1 131271862 to 131271878 16 - TSS region transcription start site region 13568
Tssr13569 1 131273475 to 131273486 11 - TSS region transcription start site region 13569
Tssr13570 1 131275277 to 131275305 28 - TSS region transcription start site region 13570
Tssr8626 1 131275597 to 131275615 18 + TSS region transcription start site region 8626
Cpgi710 1 131275722 to 131275876 154 CpG island CpG island 710
Tssr13571 1 131276685 to 131276720 35 - TSS region transcription start site region 13571
Tssr13572 1 131276797 to 131276813 16 - TSS region transcription start site region 13572
Tssr13573 1 131276877 to 131276888 11 - TSS region transcription start site region 13573
Tssr13574 1 131276895 to 131276906 11 - TSS region transcription start site region 13574
Tssr13575 1 131276914 to 131276925 11 - TSS region transcription start site region 13575
Tssr13576 1 131278756 to 131278768 12 - TSS region transcription start site region 13576
Tssr13577 1 131279515 to 131279529 14 - TSS region transcription start site region 13577
Tssr13578 1 131279544 to 131279570 26 - TSS region transcription start site region 13578
Tssr13579 1 131281893 to 131281903 10 - TSS region transcription start site region 13579
Srgap2 1 131285251 to 131527352 242101 - protein coding gene SLIT-ROBO Rho GTPase activating protein 2
Gm38262 1 131341302 to 131342683 1381 - unclassified gene predicted gene, 38262
Gm37954 1 131376461 to 131378531 2070 - unclassified gene predicted gene, 37954
Gm29488 1 131406812 to 131409213 2401 - sense intronic lncRNA gene predicted gene 29488
Tssr13580 1 131424936 to 131424940 4 - TSS region transcription start site region 13580
Tssr13581 1 131427169 to 131427173 4 - TSS region transcription start site region 13581
Gm29487 1 131447440 to 131447695 255 - pseudogene predicted gene 29487
Tssr13582 1 131472621 to 131472629 8 - TSS region transcription start site region 13582
Tssr13583 1 131477835 to 131477854 19 - TSS region transcription start site region 13583
Tssr13584 1 131490268 to 131490272 4 - TSS region transcription start site region 13584
Tssr13585 1 131495389 to 131495416 27 - TSS region transcription start site region 13585
Gm24273 1 131498639 to 131498802 163 - miRNA gene predicted gene, 24273
Tssr13586 1 131511423 to 131511433 10 - TSS region transcription start site region 13586
Tssr13587 1 131514224 to 131514238 14 - TSS region transcription start site region 13587
Tssr13588 1 131520706 to 131520710 4 - TSS region transcription start site region 13588
Tssr13589 1 131525140 to 131525162 22 - TSS region transcription start site region 13589
Tssr13590 1 131525169 to 131525232 63 - TSS region transcription start site region 13590
Cpgi711 1 131525181 to 131528641 3460 CpG island CpG island 711
Tssr13591 1 131525243 to 131525259 16 - TSS region transcription start site region 13591
Tssr8627 1 131525266 to 131525279 13 + TSS region transcription start site region 8627
Tssr13592 1 131525311 to 131525351 40 - TSS region transcription start site region 13592
Tssr13593 1 131525411 to 131525428 17 - TSS region transcription start site region 13593
Tssr8628 1 131525422 to 131525453 31 + TSS region transcription start site region 8628
Tssr13594 1 131525521 to 131525538 17 - TSS region transcription start site region 13594
Tssr13595 1 131525557 to 131525585 28 - TSS region transcription start site region 13595
Tssr13596 1 131525591 to 131525618 27 - TSS region transcription start site region 13596
Tssr13597 1 131525836 to 131525847 11 - TSS region transcription start site region 13597
Tssr13598 1 131526475 to 131526548 73 - TSS region transcription start site region 13598
Tssr13599 1 131526556 to 131526590 34 - TSS region transcription start site region 13599
Tssr13600 1 131526725 to 131526745 20 - TSS region transcription start site region 13600
Tssr13601 1 131527266 to 131527293 27 - TSS region transcription start site region 13601
Tssr13602 1 131527302 to 131527385 83 - TSS region transcription start site region 13602
Tssr13603 1 131527523 to 131527540 17 - TSS region transcription start site region 13603
Tssr8629 1 131527858 to 131527871 13 + TSS region transcription start site region 8629
Tssr8630 1 131527901 to 131527911 10 + TSS region transcription start site region 8630
Fam72a 1 131527903 to 131539035 11132 + protein coding gene family with sequence similarity 72, member A
Tssr8631 1 131527980 to 131528002 22 + TSS region transcription start site region 8631
Tssr8632 1 131528361 to 131528376 15 + TSS region transcription start site region 8632
Cpgi712 1 131555314 to 131555538 224 CpG island CpG island 712
Tssr8633 1 131562950 to 131562953 3 + TSS region transcription start site region 8633
Tssr8634 1 131573843 to 131573847 4 + TSS region transcription start site region 8634
Avpr1b 1 131599239 to 131612000 12761 + protein coding gene arginine vasopressin receptor 1B
Cpgi713 1 131599926 to 131600137 211 CpG island CpG island 713
Gm8532 1 131632509 to 131632969 460 - pseudogene predicted gene 8532
Tssr8635 1 131638270 to 131638296 26 + TSS region transcription start site region 8635
Tssr8636 1 131638306 to 131638338 32 + TSS region transcription start site region 8636
Ctse 1 131638314 to 131675507 37193 + protein coding gene cathepsin E
Tssr8637 1 131638354 to 131638363 9 + TSS region transcription start site region 8637
Tssr8638 1 131638388 to 131638404 16 + TSS region transcription start site region 8638
Tssr8639 1 131638440 to 131638484 44 + TSS region transcription start site region 8639
Tssr8640 1 131638485 to 131638496 11 + TSS region transcription start site region 8640
Gm46156 1 131646887 to 131650331 3444 + protein coding gene predicted gene, 46156
Tssr8641 1 131661868 to 131661879 11 + TSS region transcription start site region 8641
Tssr8642 1 131661903 to 131661939 36 + TSS region transcription start site region 8642
Tssr8643 1 131661948 to 131661974 26 + TSS region transcription start site region 8643
Tssr8644 1 131672262 to 131672277 15 + TSS region transcription start site region 8644
Tssr8645 1 131672281 to 131672294 13 + TSS region transcription start site region 8645
Tssr8646 1 131674860 to 131674876 16 + TSS region transcription start site region 8646
Tssr8647 1 131674916 to 131674938 22 + TSS region transcription start site region 8647
Tssr8648 1 131674945 to 131674960 15 + TSS region transcription start site region 8648
Tssr8649 1 131675030 to 131675058 28 + TSS region transcription start site region 8649
Tssr8650 1 131675076 to 131675086 10 + TSS region transcription start site region 8650
Tssr13604 1 131688585 to 131688611 26 - TSS region transcription start site region 13604
Tssr8651 1 131688670 to 131688734 64 + TSS region transcription start site region 8651
Rab7b 1 131688695 to 131715439 26744 + protein coding gene RAB7B, member RAS oncogene family
Tssr8652 1 131688744 to 131688753 9 + TSS region transcription start site region 8652
Tssr8653 1 131688771 to 131688784 13 + TSS region transcription start site region 8653
Tssr8654 1 131696618 to 131696630 12 + TSS region transcription start site region 8654
Tssr8655 1 131696657 to 131696668 11 + TSS region transcription start site region 8655
Tssr8656 1 131712620 to 131712632 12 + TSS region transcription start site region 8656
Tssr8657 1 131712715 to 131712725 10 + TSS region transcription start site region 8657
Tssr8658 1 131712918 to 131712929 11 + TSS region transcription start site region 8658
Tssr8659 1 131713096 to 131713111 15 + TSS region transcription start site region 8659
Gm30104 1 131730239 to 131733668 3429 - lncRNA gene predicted gene, 30104
Tssr13605 1 131733532 to 131733548 16 - TSS region transcription start site region 13605
Tssr8660 1 131744011 to 131744029 18 + TSS region transcription start site region 8660
Slc26a9 1 131744022 to 131771504 27482 + protein coding gene solute carrier family 26, member 9
Tssr8661 1 131744178 to 131744195 17 + TSS region transcription start site region 8661
Tssr8662 1 131750381 to 131750386 5 + TSS region transcription start site region 8662
Tssr8663 1 131750485 to 131750494 9 + TSS region transcription start site region 8663
Tssr8664 1 131750506 to 131750519 13 + TSS region transcription start site region 8664
Tssr13606 1 131760157 to 131760164 7 - TSS region transcription start site region 13606
Tssr8665 1 131760319 to 131760327 8 + TSS region transcription start site region 8665
Tssr8666 1 131761557 to 131761563 6 + TSS region transcription start site region 8666
Tssr8667 1 131797383 to 131797418 35 + TSS region transcription start site region 8667
Pm20d1 1 131797384 to 131821419 24035 + protein coding gene peptidase M20 domain containing 1
Tssr8668 1 131797426 to 131797431 5 + TSS region transcription start site region 8668
Cpgi714 1 131797439 to 131797759 320 CpG island CpG island 714
Cpgi715 1 131827270 to 131828539 1269 CpG island CpG island 715
Tssr8669 1 131827520 to 131827537 17 + TSS region transcription start site region 8669
Tssr13607 1 131827815 to 131827840 25 - TSS region transcription start site region 13607
Tssr8670 1 131828002 to 131828019 17 + TSS region transcription start site region 8670
Slc41a1 1 131828012 to 131848863 20851 + protein coding gene solute carrier family 41, member 1
Tssr8671 1 131828032 to 131828049 17 + TSS region transcription start site region 8671
Tssr8672 1 131828057 to 131828066 9 + TSS region transcription start site region 8672
Tssr8673 1 131828073 to 131828079 6 + TSS region transcription start site region 8673
Tssr8674 1 131828315 to 131828341 26 + TSS region transcription start site region 8674
Tssr8675 1 131828343 to 131828363 20 + TSS region transcription start site region 8675
Tssr8676 1 131828986 to 131828992 6 + TSS region transcription start site region 8676
Tssr8677 1 131838796 to 131838809 13 + TSS region transcription start site region 8677
Tssr8678 1 131843991 to 131844006 15 + TSS region transcription start site region 8678
Tssr8679 1 131846728 to 131846755 27 + TSS region transcription start site region 8679
Tssr8680 1 131847562 to 131847579 17 + TSS region transcription start site region 8680
Cpgi716 1 131867134 to 131867942 808 CpG island CpG island 716
Rab29 1 131867224 to 131872887 5663 + protein coding gene RAB29, member RAS oncogene family
Tssr8681 1 131867239 to 131867272 33 + TSS region transcription start site region 8681
Tssr8682 1 131867276 to 131867296 20 + TSS region transcription start site region 8682
Tssr8683 1 131867486 to 131867528 42 + TSS region transcription start site region 8683
Tssr8684 1 131867613 to 131867632 19 + TSS region transcription start site region 8684
Tssr8685 1 131867635 to 131867647 12 + TSS region transcription start site region 8685
Gm29105 1 131907165 to 131907954 789 + pseudogene predicted gene 29105
Cpgi717 1 131910228 to 131911647 1419 CpG island CpG island 717
Tssr13608 1 131910265 to 131910274 9 - TSS region transcription start site region 13608
Tssr8686 1 131910483 to 131910539 56 + TSS region transcription start site region 8686
Nucks1 1 131910534 to 131936321 25787 + protein coding gene nuclear casein kinase and cyclin-dependent kinase substrate 1
Tssr8687 1 131910558 to 131910572 14 + TSS region transcription start site region 8687
Tssr8688 1 131910679 to 131910702 23 + TSS region transcription start site region 8688
Tssr13609 1 131910850 to 131910867 17 - TSS region transcription start site region 13609
Tssr13610 1 131911107 to 131911125 18 - TSS region transcription start site region 13610
Tssr13611 1 131911126 to 131911145 19 - TSS region transcription start site region 13611
Gm38067 1 131914529 to 131916439 1910 + unclassified gene predicted gene, 38067
Tssr8689 1 131919009 to 131919022 13 + TSS region transcription start site region 8689
Tssr8690 1 131932019 to 131932037 18 + TSS region transcription start site region 8690
Tssr8691 1 131932045 to 131932052 7 + TSS region transcription start site region 8691
Tssr8692 1 131932071 to 131932085 14 + TSS region transcription start site region 8692
Tssr8693 1 131932118 to 131932134 16 + TSS region transcription start site region 8693
Gm37676 1 131932464 to 131932970 506 - unclassified gene predicted gene, 37676
Tssr8694 1 131935289 to 131935313 24 + TSS region transcription start site region 8694
D1Mit497 1 131958404 to 131958513 109 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 497
Cpgi718 1 131962497 to 131964047 1550 CpG island CpG island 718
Tssr8695 1 131962941 to 131962969 28 + TSS region transcription start site region 8695
Gm29103 1 131962954 to 132014486 51532 + unclassified non-coding RNA gene predicted gene 29103
Slc45a3 1 131962967 to 131982969 20002 + protein coding gene solute carrier family 45, member 3
Tssr8696 1 131962987 to 131963001 14 + TSS region transcription start site region 8696
Tssr8697 1 131969908 to 131969912 4 + TSS region transcription start site region 8697
Tssr8698 1 131970555 to 131970572 17 + TSS region transcription start site region 8698
Tssr8699 1 131970589 to 131970601 12 + TSS region transcription start site region 8699
Tssr8700 1 131974293 to 131974341 48 + TSS region transcription start site region 8700
Tssr13612 1 132007170 to 132007175 5 - TSS region transcription start site region 13612
Cpgi719 1 132007230 to 132008574 1344 CpG island CpG island 719
Tssr8701 1 132007378 to 132007392 14 + TSS region transcription start site region 8701
Tssr203 1 132007395 to 132007418 23 + TSS region transcription start site region 203
Tssr204 1 132007466 to 132007478 12 - TSS region transcription start site region 204
Tssr13613 1 132007480 to 132007503 23 - TSS region transcription start site region 13613
Tssr8702 1 132007554 to 132007591 37 + TSS region transcription start site region 8702
Elk4 1 132007605 to 132026448 18843 + protein coding gene ELK4, member of ETS oncogene family
Tssr8703 1 132007606 to 132007634 28 + TSS region transcription start site region 8703
Tssr8704 1 132007640 to 132007673 33 + TSS region transcription start site region 8704
Tssr205 1 132007889 to 132007903 14 - TSS region transcription start site region 205
Tssr206 1 132007906 to 132007917 11 - TSS region transcription start site region 206
Tssr13614 1 132007919 to 132007943 24 - TSS region transcription start site region 13614
Tssr13615 1 132008002 to 132008054 52 - TSS region transcription start site region 13615
Tssr8705 1 132008093 to 132008154 61 + TSS region transcription start site region 8705
Tssr8706 1 132008285 to 132008316 31 + TSS region transcription start site region 8706
Tssr8707 1 132008324 to 132008357 33 + TSS region transcription start site region 8707
Tssr8708 1 132008369 to 132008397 28 + TSS region transcription start site region 8708
Tssr207 1 132008547 to 132008584 37 + TSS region transcription start site region 207
Tssr8709 1 132008860 to 132008885 25 + TSS region transcription start site region 8709
Tssr8710 1 132008900 to 132008910 10 + TSS region transcription start site region 8710
Tssr13616 1 132010605 to 132010608 3 - TSS region transcription start site region 13616
Tssr8711 1 132014522 to 132014535 13 + TSS region transcription start site region 8711
Tssr8712 1 132017749 to 132017769 20 + TSS region transcription start site region 8712
Mfsd4a 1 132022806 to 132068062 45256 - protein coding gene major facilitator superfamily domain containing 4A
Tssr8713 1 132023880 to 132023885 5 + TSS region transcription start site region 8713
Tssr8714 1 132030768 to 132030793 25 + TSS region transcription start site region 8714
Gm26892 1 132036805 to 132067945 31140 + lincRNA gene predicted gene, 26892
Tssr13617 1 132041954 to 132041957 3 - TSS region transcription start site region 13617