Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:130875166-131525177

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fcmr 1 130865777 to 130880790 15013 + protein coding gene Fc fragment of IgM receptor
Tssr8607 1 130875982 to 130876008 26 + TSS region transcription start site region 8607
Tssr13531 1 130876157 to 130876161 4 - TSS region transcription start site region 13531
Tssr8608 1 130877788 to 130877800 12 + TSS region transcription start site region 8608
Cpgi704 1 130877990 to 130878565 575 CpG island CpG island 704
Tssr8609 1 130878327 to 130878340 13 + TSS region transcription start site region 8609
Tssr8610 1 130878346 to 130878359 13 + TSS region transcription start site region 8610
Tssr8611 1 130878420 to 130878442 22 + TSS region transcription start site region 8611
Il24 1 130882074 to 130887411 5337 - protein coding gene interleukin 24
Tssr13532 1 130887408 to 130887421 13 - TSS region transcription start site region 13532
Il20 1 130906985 to 130911296 4311 - protein coding gene interleukin 20
Tssr13533 1 130911441 to 130911451 10 - TSS region transcription start site region 13533
Tssr13534 1 130911544 to 130911548 4 - TSS region transcription start site region 13534
Tssr13535 1 130911552 to 130911564 12 - TSS region transcription start site region 13535
D1Mit345 1 130913022 to 130913118 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 345
Il19 1 130932656 to 130940115 7459 - protein coding gene interleukin 19
Gm41952 1 130963490 to 130972532 9042 + lncRNA gene predicted gene, 41952
Tssr8612 1 131019799 to 131019816 17 + TSS region transcription start site region 8612
Tssr8613 1 131019843 to 131019852 9 + TSS region transcription start site region 8613
Il10 1 131019845 to 131024970 5125 + protein coding gene interleukin 10
Tssr8614 1 131020072 to 131020084 12 + TSS region transcription start site region 8614
Tssr13536 1 131021649 to 131021652 3 - TSS region transcription start site region 13536
Tssr13537 1 131037983 to 131037984 1 - TSS region transcription start site region 13537
Mapkapk2 1 131053700 to 131097826 44126 - protein coding gene MAP kinase-activated protein kinase 2
Tssr13538 1 131054880 to 131054903 23 - TSS region transcription start site region 13538
Tssr13539 1 131056510 to 131056534 24 - TSS region transcription start site region 13539
Tssr13540 1 131058703 to 131058715 12 - TSS region transcription start site region 13540
Tssr13541 1 131066298 to 131066330 32 - TSS region transcription start site region 13541
Gm25549 1 131073658 to 131073751 93 - snRNA gene predicted gene, 25549
8030443L12Rik 1 131084273 to 131084735 462 unclassified gene RIKEN cDNA 8030443L12 gene
Gm37084 1 131086252 to 131092149 5897 - unclassified gene predicted gene, 37084
Tssr13542 1 131094973 to 131094985 12 - TSS region transcription start site region 13542
Cpgi705 1 131096698 to 131098071 1373 CpG island CpG island 705
Tssr13543 1 131097431 to 131097455 24 - TSS region transcription start site region 13543
Tssr13544 1 131097535 to 131097576 41 - TSS region transcription start site region 13544
Tssr13545 1 131097771 to 131097783 12 - TSS region transcription start site region 13545
Tssr13546 1 131097799 to 131097812 13 - TSS region transcription start site region 13546
Tssr13547 1 131097826 to 131097844 18 - TSS region transcription start site region 13547
Tssr13548 1 131097850 to 131097868 18 - TSS region transcription start site region 13548
Tssr8615 1 131097942 to 131097966 24 + TSS region transcription start site region 8615
Tssr13549 1 131098108 to 131098128 20 - TSS region transcription start site region 13549
Gm25717 1 131102393 to 131102745 352 - unclassified non-coding RNA gene predicted gene, 25717
Dyrk3 1 131128441 to 131138234 9793 - protein coding gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
Tssr202 1 131135406 to 131135424 18 + TSS region transcription start site region 202
Tssr13550 1 131136295 to 131136321 26 - TSS region transcription start site region 13550
Tssr13551 1 131136329 to 131136341 12 - TSS region transcription start site region 13551
Tssr13552 1 131136421 to 131136425 4 - TSS region transcription start site region 13552
Cpgi706 1 131137696 to 131138690 994 CpG island CpG island 706
Tssr13553 1 131138126 to 131138131 5 - TSS region transcription start site region 13553
Tssr13554 1 131138139 to 131138160 21 - TSS region transcription start site region 13554
Tssr13555 1 131138232 to 131138261 29 - TSS region transcription start site region 13555
Tssr13556 1 131138268 to 131138326 58 - TSS region transcription start site region 13556
Tssr8616 1 131138396 to 131138426 30 + TSS region transcription start site region 8616
Tssr8617 1 131138431 to 131138456 25 + TSS region transcription start site region 8617
Tssr13557 1 131139296 to 131139339 43 - TSS region transcription start site region 13557
Tssr8618 1 131139947 to 131139962 15 + TSS region transcription start site region 8618
Tssr8619 1 131143004 to 131143013 9 + TSS region transcription start site region 8619
Tssr8620 1 131149729 to 131149737 8 + TSS region transcription start site region 8620
Cpgi707 1 131152974 to 131153339 365 CpG island CpG island 707
Tssr8621 1 131153175 to 131153186 11 + TSS region transcription start site region 8621
Eif2d 1 131153181 to 131187658 34477 + protein coding gene eukaryotic translation initiation factor 2D
Tssr8622 1 131153187 to 131153261 74 + TSS region transcription start site region 8622
Tssr8623 1 131161266 to 131161288 22 + TSS region transcription start site region 8623
Rassf5 1 131176410 to 131245178 68768 - protein coding gene Ras association (RalGDS/AF-6) domain family member 5
Cpgi708 1 131199803 to 131200014 211 CpG island CpG island 708
Tssr13558 1 131199919 to 131199928 9 - TSS region transcription start site region 13558
Tssr13559 1 131199932 to 131199952 20 - TSS region transcription start site region 13559
Tssr13560 1 131199959 to 131199975 16 - TSS region transcription start site region 13560
Tssr13561 1 131199987 to 131199992 5 - TSS region transcription start site region 13561
Tssr13562 1 131200089 to 131200145 56 - TSS region transcription start site region 13562
Tssr13563 1 131200166 to 131200177 11 - TSS region transcription start site region 13563
Tssr13564 1 131200181 to 131200188 7 - TSS region transcription start site region 13564
Tssr13565 1 131200204 to 131200215 11 - TSS region transcription start site region 13565
Tssr8624 1 131204699 to 131204739 40 + TSS region transcription start site region 8624
Gm17796 1 131216877 to 131218089 1212 + pseudogene predicted gene, 17796
D1Mit193 1 131228571 to 131228693 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 193
Ity3 1 131228571 to 165311895 34083324 QTL immunity to S. typhimurium 3
Tssr13566 1 131233660 to 131233679 19 - TSS region transcription start site region 13566
Cpgi709 1 131244097 to 131245843 1746 CpG island CpG island 709
Tssr13567 1 131245167 to 131245185 18 - TSS region transcription start site region 13567
Tssr8625 1 131245323 to 131245334 11 + TSS region transcription start site region 8625
Ikbke 1 131254600 to 131279629 25029 - protein coding gene inhibitor of kappaB kinase epsilon
Gm28914 1 131259507 to 131260553 1046 + antisense lncRNA gene predicted gene 28914
Gm28913 1 131263330 to 131266749 3419 + antisense lncRNA gene predicted gene 28913
Tssr13568 1 131271862 to 131271878 16 - TSS region transcription start site region 13568
Tssr13569 1 131273475 to 131273486 11 - TSS region transcription start site region 13569
Tssr13570 1 131275277 to 131275305 28 - TSS region transcription start site region 13570
Tssr8626 1 131275597 to 131275615 18 + TSS region transcription start site region 8626
Cpgi710 1 131275722 to 131275876 154 CpG island CpG island 710
Tssr13571 1 131276685 to 131276720 35 - TSS region transcription start site region 13571
Tssr13572 1 131276797 to 131276813 16 - TSS region transcription start site region 13572
Tssr13573 1 131276877 to 131276888 11 - TSS region transcription start site region 13573
Tssr13574 1 131276895 to 131276906 11 - TSS region transcription start site region 13574
Tssr13575 1 131276914 to 131276925 11 - TSS region transcription start site region 13575
Tssr13576 1 131278756 to 131278768 12 - TSS region transcription start site region 13576
Tssr13577 1 131279515 to 131279529 14 - TSS region transcription start site region 13577
Tssr13578 1 131279544 to 131279570 26 - TSS region transcription start site region 13578
Tssr13579 1 131281893 to 131281903 10 - TSS region transcription start site region 13579
Srgap2 1 131285251 to 131527352 242101 - protein coding gene SLIT-ROBO Rho GTPase activating protein 2
Gm38262 1 131341302 to 131342683 1381 - unclassified gene predicted gene, 38262
Gm37954 1 131376461 to 131378531 2070 - unclassified gene predicted gene, 37954
Gm29488 1 131406812 to 131409213 2401 - sense intronic lncRNA gene predicted gene 29488
Tssr13580 1 131424936 to 131424940 4 - TSS region transcription start site region 13580
Tssr13581 1 131427169 to 131427173 4 - TSS region transcription start site region 13581
Gm29487 1 131447440 to 131447695 255 - pseudogene predicted gene 29487
Tssr13582 1 131472621 to 131472629 8 - TSS region transcription start site region 13582
Tssr13583 1 131477835 to 131477854 19 - TSS region transcription start site region 13583
Tssr13584 1 131490268 to 131490272 4 - TSS region transcription start site region 13584
Tssr13585 1 131495389 to 131495416 27 - TSS region transcription start site region 13585
Gm24273 1 131498639 to 131498802 163 - miRNA gene predicted gene, 24273
Tssr13586 1 131511423 to 131511433 10 - TSS region transcription start site region 13586
Tssr13587 1 131514224 to 131514238 14 - TSS region transcription start site region 13587
Tssr13588 1 131520706 to 131520710 4 - TSS region transcription start site region 13588
Tssr13589 1 131525140 to 131525162 22 - TSS region transcription start site region 13589
Tssr13590 1 131525169 to 131525232 63 - TSS region transcription start site region 13590