Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:130511625-131191657

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm16083 1 130515048 to 130557069 42021 + antisense lncRNA gene predicted gene 16083
Tssr8559 1 130551006 to 130551021 15 + TSS region transcription start site region 8559
Zp3r 1 130576713 to 130629621 52908 - protein coding gene zona pellucida 3 receptor
Gm23623 1 130595570 to 130595676 106 - snRNA gene predicted gene, 23623
Tssr13507 1 130629563 to 130629574 11 - TSS region transcription start site region 13507
Tssr199 1 130629578 to 130629581 3 - TSS region transcription start site region 199
Tssr13508 1 130629598 to 130629607 9 - TSS region transcription start site region 13508
Tssr13509 1 130629614 to 130629626 12 - TSS region transcription start site region 13509
C4bp 1 130635921 to 130661645 25724 - protein coding gene complement component 4 binding protein
Tssr13510 1 130647468 to 130647473 5 - TSS region transcription start site region 13510
D1Ertd273e 1 130651495 to 130651734 239 DNA segment DNA segment, Chr 1, ERATO Doi 273, expressed
Tssr13511 1 130661491 to 130661511 20 - TSS region transcription start site region 13511
Tssr13512 1 130661524 to 130661539 15 - TSS region transcription start site region 13512
Tssr13513 1 130661553 to 130661564 11 - TSS region transcription start site region 13513
Tssr13514 1 130661565 to 130661583 18 - TSS region transcription start site region 13514
Tssr13515 1 130661584 to 130661609 25 - TSS region transcription start site region 13515
Tssr13516 1 130661613 to 130661637 24 - TSS region transcription start site region 13516
Tssr13517 1 130661654 to 130661663 9 - TSS region transcription start site region 13517
C4bp-ps1 1 130670202 to 130681571 11369 - pseudogene complement component 4 binding protein, pseudogene 1
Gm29427 1 130670209 to 130715799 45590 - protein coding gene predicted gene 29427
Pfkfb2 1 130689182 to 130729253 40071 - protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
Cpgi702 1 130715513 to 130716009 496 CpG island CpG island 702
Tssr13518 1 130715772 to 130715825 53 - TSS region transcription start site region 13518
Tssr13519 1 130715827 to 130715848 21 - TSS region transcription start site region 13519
Tssr13520 1 130716005 to 130716032 27 - TSS region transcription start site region 13520
Tssr8560 1 130716130 to 130716171 41 + TSS region transcription start site region 8560
Cpgi703 1 130716572 to 130717980 1408 CpG island CpG island 703
Tssr13521 1 130716934 to 130716975 41 - TSS region transcription start site region 13521
Tssr8561 1 130717060 to 130717080 20 + TSS region transcription start site region 8561
Tssr8562 1 130717084 to 130717098 14 + TSS region transcription start site region 8562
Tssr8563 1 130717320 to 130717333 13 + TSS region transcription start site region 8563
Yod1 1 130717327 to 130722073 4746 + protein coding gene YOD1 deubiquitinase
Tssr8564 1 130717502 to 130717561 59 + TSS region transcription start site region 8564
Gm37163 1 130727132 to 130728821 1689 - unclassified gene predicted gene, 37163
Tssr13522 1 130729249 to 130729260 11 - TSS region transcription start site region 13522
Tssr8565 1 130731963 to 130731991 28 + TSS region transcription start site region 8565
AA986860 1 130731976 to 130744622 12646 + protein coding gene expressed sequence AA986860
Tssr8566 1 130732041 to 130732052 11 + TSS region transcription start site region 8566
Tssr8567 1 130732094 to 130732101 7 + TSS region transcription start site region 8567
Tssr8568 1 130732103 to 130732135 32 + TSS region transcription start site region 8568
Tssr13523 1 130732618 to 130732622 4 - TSS region transcription start site region 13523
Tssr13524 1 130733850 to 130733853 3 - TSS region transcription start site region 13524
Gm28857 1 130740162 to 130741327 1165 - antisense lncRNA gene predicted gene 28857
Tssr13525 1 130741286 to 130741296 10 - TSS region transcription start site region 13525
Tssr13526 1 130764072 to 130764083 11 - TSS region transcription start site region 13526
Tssr13527 1 130764095 to 130764109 14 - TSS region transcription start site region 13527
Tssr8569 1 130764971 to 130764988 17 + TSS region transcription start site region 8569
Gm28856 1 130766384 to 130784433 18049 + lincRNA gene predicted gene 28856
Tssr13528 1 130780012 to 130780020 8 - TSS region transcription start site region 13528
Tssr8570 1 130800635 to 130800640 5 + TSS region transcription start site region 8570
Fcamr 1 130800902 to 130814740 13838 + protein coding gene Fc receptor, IgA, IgM, high affinity
Tssr8571 1 130803082 to 130803091 9 + TSS region transcription start site region 8571
Gm15848 1 130809979 to 130818910 8931 - antisense lncRNA gene predicted gene 15848
Tssr13529 1 130820706 to 130820729 23 - TSS region transcription start site region 13529
Tssr8572 1 130826659 to 130826665 6 + TSS region transcription start site region 8572
Tssr8573 1 130826676 to 130826755 79 + TSS region transcription start site region 8573
Pigr 1 130826684 to 130852249 25565 + protein coding gene polymeric immunoglobulin receptor
Tssr8574 1 130826762 to 130826769 7 + TSS region transcription start site region 8574
Tssr200 1 130832064 to 130832068 4 - TSS region transcription start site region 200
Tssr8575 1 130834395 to 130834416 21 + TSS region transcription start site region 8575
Tssr8576 1 130841546 to 130841559 13 + TSS region transcription start site region 8576
Tssr8577 1 130841692 to 130841704 12 + TSS region transcription start site region 8577
Tssr8578 1 130844691 to 130844701 10 + TSS region transcription start site region 8578
Tssr8579 1 130846369 to 130846401 32 + TSS region transcription start site region 8579
Tssr8580 1 130847473 to 130847485 12 + TSS region transcription start site region 8580
Tssr8581 1 130848434 to 130848446 12 + TSS region transcription start site region 8581
Tssr8582 1 130849046 to 130849079 33 + TSS region transcription start site region 8582
Tssr8583 1 130849572 to 130849583 11 + TSS region transcription start site region 8583
Tssr8584 1 130850700 to 130850709 9 + TSS region transcription start site region 8584
Tssr8585 1 130850733 to 130850742 9 + TSS region transcription start site region 8585
Tssr8586 1 130851407 to 130851420 13 + TSS region transcription start site region 8586
Tssr8587 1 130851433 to 130851444 11 + TSS region transcription start site region 8587
Tssr201 1 130851447 to 130851454 7 + TSS region transcription start site region 201
Tssr8588 1 130851459 to 130851465 6 + TSS region transcription start site region 8588
Tssr8589 1 130851533 to 130851544 11 + TSS region transcription start site region 8589
Tssr8590 1 130851549 to 130851556 7 + TSS region transcription start site region 8590
Tssr8591 1 130851584 to 130851600 16 + TSS region transcription start site region 8591
Tssr8592 1 130851604 to 130851624 20 + TSS region transcription start site region 8592
Tssr8593 1 130851625 to 130851657 32 + TSS region transcription start site region 8593
Tssr8594 1 130851662 to 130851682 20 + TSS region transcription start site region 8594
Tssr8595 1 130851690 to 130851705 15 + TSS region transcription start site region 8595
Tssr8596 1 130851716 to 130851734 18 + TSS region transcription start site region 8596
Tssr8597 1 130851735 to 130851763 28 + TSS region transcription start site region 8597
Tssr13530 1 130851803 to 130851823 20 - TSS region transcription start site region 13530
Tssr8598 1 130852129 to 130852138 9 + TSS region transcription start site region 8598
Tssr8599 1 130852174 to 130852178 4 + TSS region transcription start site region 8599
Tssr8600 1 130865746 to 130865768 22 + TSS region transcription start site region 8600
Tssr8601 1 130865770 to 130865785 15 + TSS region transcription start site region 8601
Fcmr 1 130865777 to 130880790 15013 + protein coding gene Fc fragment of IgM receptor
Tssr8602 1 130865787 to 130865804 17 + TSS region transcription start site region 8602
Tssr8603 1 130866056 to 130866072 16 + TSS region transcription start site region 8603
Tssr8604 1 130874165 to 130874171 6 + TSS region transcription start site region 8604
Tssr8605 1 130874226 to 130874237 11 + TSS region transcription start site region 8605
Tssr8606 1 130874325 to 130874333 8 + TSS region transcription start site region 8606
Tssr8607 1 130875982 to 130876008 26 + TSS region transcription start site region 8607
Tssr13531 1 130876157 to 130876161 4 - TSS region transcription start site region 13531
Tssr8608 1 130877788 to 130877800 12 + TSS region transcription start site region 8608
Cpgi704 1 130877990 to 130878565 575 CpG island CpG island 704
Tssr8609 1 130878327 to 130878340 13 + TSS region transcription start site region 8609
Tssr8610 1 130878346 to 130878359 13 + TSS region transcription start site region 8610
Tssr8611 1 130878420 to 130878442 22 + TSS region transcription start site region 8611
Il24 1 130882074 to 130887411 5337 - protein coding gene interleukin 24
Tssr13532 1 130887408 to 130887421 13 - TSS region transcription start site region 13532
Il20 1 130906985 to 130911296 4311 - protein coding gene interleukin 20
Tssr13533 1 130911441 to 130911451 10 - TSS region transcription start site region 13533
Tssr13534 1 130911544 to 130911548 4 - TSS region transcription start site region 13534
Tssr13535 1 130911552 to 130911564 12 - TSS region transcription start site region 13535
D1Mit345 1 130913022 to 130913118 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 345
Il19 1 130932656 to 130940115 7459 - protein coding gene interleukin 19
Gm41952 1 130963490 to 130972532 9042 + lncRNA gene predicted gene, 41952
Tssr8612 1 131019799 to 131019816 17 + TSS region transcription start site region 8612
Tssr8613 1 131019843 to 131019852 9 + TSS region transcription start site region 8613
Il10 1 131019845 to 131024970 5125 + protein coding gene interleukin 10
Tssr8614 1 131020072 to 131020084 12 + TSS region transcription start site region 8614
Tssr13536 1 131021649 to 131021652 3 - TSS region transcription start site region 13536
Tssr13537 1 131037983 to 131037984 1 - TSS region transcription start site region 13537
Mapkapk2 1 131053700 to 131097826 44126 - protein coding gene MAP kinase-activated protein kinase 2
Tssr13538 1 131054880 to 131054903 23 - TSS region transcription start site region 13538
Tssr13539 1 131056510 to 131056534 24 - TSS region transcription start site region 13539
Tssr13540 1 131058703 to 131058715 12 - TSS region transcription start site region 13540
Tssr13541 1 131066298 to 131066330 32 - TSS region transcription start site region 13541
Gm25549 1 131073658 to 131073751 93 - snRNA gene predicted gene, 25549
8030443L12Rik 1 131084273 to 131084735 462 unclassified gene RIKEN cDNA 8030443L12 gene
Gm37084 1 131086252 to 131092149 5897 - unclassified gene predicted gene, 37084
Tssr13542 1 131094973 to 131094985 12 - TSS region transcription start site region 13542
Cpgi705 1 131096698 to 131098071 1373 CpG island CpG island 705
Tssr13543 1 131097431 to 131097455 24 - TSS region transcription start site region 13543
Tssr13544 1 131097535 to 131097576 41 - TSS region transcription start site region 13544
Tssr13545 1 131097771 to 131097783 12 - TSS region transcription start site region 13545
Tssr13546 1 131097799 to 131097812 13 - TSS region transcription start site region 13546
Tssr13547 1 131097826 to 131097844 18 - TSS region transcription start site region 13547
Tssr13548 1 131097850 to 131097868 18 - TSS region transcription start site region 13548
Tssr8615 1 131097942 to 131097966 24 + TSS region transcription start site region 8615
Tssr13549 1 131098108 to 131098128 20 - TSS region transcription start site region 13549
Gm25717 1 131102393 to 131102745 352 - unclassified non-coding RNA gene predicted gene, 25717
Dyrk3 1 131128441 to 131138234 9793 - protein coding gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
Tssr202 1 131135406 to 131135424 18 + TSS region transcription start site region 202
Tssr13550 1 131136295 to 131136321 26 - TSS region transcription start site region 13550
Tssr13551 1 131136329 to 131136341 12 - TSS region transcription start site region 13551
Tssr13552 1 131136421 to 131136425 4 - TSS region transcription start site region 13552
Cpgi706 1 131137696 to 131138690 994 CpG island CpG island 706
Tssr13553 1 131138126 to 131138131 5 - TSS region transcription start site region 13553
Tssr13554 1 131138139 to 131138160 21 - TSS region transcription start site region 13554
Tssr13555 1 131138232 to 131138261 29 - TSS region transcription start site region 13555
Tssr13556 1 131138268 to 131138326 58 - TSS region transcription start site region 13556
Tssr8616 1 131138396 to 131138426 30 + TSS region transcription start site region 8616
Tssr8617 1 131138431 to 131138456 25 + TSS region transcription start site region 8617
Tssr13557 1 131139296 to 131139339 43 - TSS region transcription start site region 13557
Tssr8618 1 131139947 to 131139962 15 + TSS region transcription start site region 8618
Tssr8619 1 131143004 to 131143013 9 + TSS region transcription start site region 8619
Tssr8620 1 131149729 to 131149737 8 + TSS region transcription start site region 8620
Cpgi707 1 131152974 to 131153339 365 CpG island CpG island 707
Tssr8621 1 131153175 to 131153186 11 + TSS region transcription start site region 8621
Eif2d 1 131153181 to 131187658 34477 + protein coding gene eukaryotic translation initiation factor 2D
Tssr8622 1 131153187 to 131153261 74 + TSS region transcription start site region 8622
Tssr8623 1 131161266 to 131161288 22 + TSS region transcription start site region 8623
Rassf5 1 131176410 to 131245178 68768 - protein coding gene Ras association (RalGDS/AF-6) domain family member 5