Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:130109149-130789175

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Thsd7b 1 129273304 to 130219278 945974 + protein coding gene thrombospondin, type I, domain containing 7B
Tssr8552 1 130163827 to 130163834 7 + TSS region transcription start site region 8552
Tssr8553 1 130163856 to 130163867 11 + TSS region transcription start site region 8553
Gm29428 1 130195980 to 130196388 408 + pseudogene predicted gene 29428
Gm16081 1 130269950 to 130281258 11308 - lincRNA gene predicted gene 16081
Gm41951 1 130302361 to 130308831 6470 + lncRNA gene predicted gene, 41951
Cd55b 1 130388537 to 130423009 34472 - protein coding gene CD55 molecule, decay accelerating factor for complement B
Tssr13493 1 130422719 to 130422739 20 - TSS region transcription start site region 13493
Tssr13494 1 130422747 to 130422759 12 - TSS region transcription start site region 13494
Tssr13495 1 130422770 to 130422792 22 - TSS region transcription start site region 13495
Gm15674 1 130422824 to 130437914 15090 + antisense lncRNA gene predicted gene 15674
Tssr13496 1 130423022 to 130423065 43 - TSS region transcription start site region 13496
Tssr13497 1 130423066 to 130423082 16 - TSS region transcription start site region 13497
Gm15675 1 130429781 to 130437191 7410 - lincRNA gene predicted gene 15675
Cd55 1 130439027 to 130462744 23717 - protein coding gene CD55 molecule, decay accelerating factor for complement
Tssr13498 1 130448720 to 130448734 14 - TSS region transcription start site region 13498
Tssr13499 1 130448998 to 130449027 29 - TSS region transcription start site region 13499
Tssr13500 1 130449149 to 130449175 26 - TSS region transcription start site region 13500
Tssr13501 1 130449216 to 130449228 12 - TSS region transcription start site region 13501
Tssr13502 1 130449267 to 130449279 12 - TSS region transcription start site region 13502
Tssr13503 1 130452518 to 130452530 12 - TSS region transcription start site region 13503
Cpgi701 1 130462215 to 130462810 595 CpG island CpG island 701
Tssr8554 1 130462272 to 130462312 40 + TSS region transcription start site region 8554
Tssr13504 1 130462470 to 130462519 49 - TSS region transcription start site region 13504
Tssr8555 1 130462558 to 130462609 51 + TSS region transcription start site region 8555
Tssr13505 1 130462680 to 130462771 91 - TSS region transcription start site region 13505
Tssr13506 1 130462984 to 130463008 24 - TSS region transcription start site region 13506
Tssr8556 1 130464106 to 130464113 7 + TSS region transcription start site region 8556
Gm37109 1 130467972 to 130470225 2253 + unclassified gene predicted gene, 37109
Gm37283 1 130473743 to 130475313 1570 + unclassified gene predicted gene, 37283
Tssr8557 1 130478493 to 130478497 4 + TSS region transcription start site region 8557
D1Mit29 1 130498322 to 130498563 241 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 29
Tssr8558 1 130508889 to 130508893 4 + TSS region transcription start site region 8558
Gm16083 1 130515048 to 130557069 42021 + antisense lncRNA gene predicted gene 16083
Tssr8559 1 130551006 to 130551021 15 + TSS region transcription start site region 8559
Zp3r 1 130576713 to 130629621 52908 - protein coding gene zona pellucida 3 receptor
Gm23623 1 130595570 to 130595676 106 - snRNA gene predicted gene, 23623
Tssr13507 1 130629563 to 130629574 11 - TSS region transcription start site region 13507
Tssr199 1 130629578 to 130629581 3 - TSS region transcription start site region 199
Tssr13508 1 130629598 to 130629607 9 - TSS region transcription start site region 13508
Tssr13509 1 130629614 to 130629626 12 - TSS region transcription start site region 13509
C4bp 1 130635921 to 130661645 25724 - protein coding gene complement component 4 binding protein
Tssr13510 1 130647468 to 130647473 5 - TSS region transcription start site region 13510
D1Ertd273e 1 130651495 to 130651734 239 DNA segment DNA segment, Chr 1, ERATO Doi 273, expressed
Tssr13511 1 130661491 to 130661511 20 - TSS region transcription start site region 13511
Tssr13512 1 130661524 to 130661539 15 - TSS region transcription start site region 13512
Tssr13513 1 130661553 to 130661564 11 - TSS region transcription start site region 13513
Tssr13514 1 130661565 to 130661583 18 - TSS region transcription start site region 13514
Tssr13515 1 130661584 to 130661609 25 - TSS region transcription start site region 13515
Tssr13516 1 130661613 to 130661637 24 - TSS region transcription start site region 13516
Tssr13517 1 130661654 to 130661663 9 - TSS region transcription start site region 13517
C4bp-ps1 1 130670202 to 130681571 11369 - pseudogene complement component 4 binding protein, pseudogene 1
Gm29427 1 130670209 to 130715799 45590 - protein coding gene predicted gene 29427
Pfkfb2 1 130689182 to 130729253 40071 - protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
Cpgi702 1 130715513 to 130716009 496 CpG island CpG island 702
Tssr13518 1 130715772 to 130715825 53 - TSS region transcription start site region 13518
Tssr13519 1 130715827 to 130715848 21 - TSS region transcription start site region 13519
Tssr13520 1 130716005 to 130716032 27 - TSS region transcription start site region 13520
Tssr8560 1 130716130 to 130716171 41 + TSS region transcription start site region 8560
Cpgi703 1 130716572 to 130717980 1408 CpG island CpG island 703
Tssr13521 1 130716934 to 130716975 41 - TSS region transcription start site region 13521
Tssr8561 1 130717060 to 130717080 20 + TSS region transcription start site region 8561
Tssr8562 1 130717084 to 130717098 14 + TSS region transcription start site region 8562
Tssr8563 1 130717320 to 130717333 13 + TSS region transcription start site region 8563
Yod1 1 130717327 to 130722073 4746 + protein coding gene YOD1 deubiquitinase
Tssr8564 1 130717502 to 130717561 59 + TSS region transcription start site region 8564
Gm37163 1 130727132 to 130728821 1689 - unclassified gene predicted gene, 37163
Tssr13522 1 130729249 to 130729260 11 - TSS region transcription start site region 13522
Tssr8565 1 130731963 to 130731991 28 + TSS region transcription start site region 8565
AA986860 1 130731976 to 130744622 12646 + protein coding gene expressed sequence AA986860
Tssr8566 1 130732041 to 130732052 11 + TSS region transcription start site region 8566
Tssr8567 1 130732094 to 130732101 7 + TSS region transcription start site region 8567
Tssr8568 1 130732103 to 130732135 32 + TSS region transcription start site region 8568
Tssr13523 1 130732618 to 130732622 4 - TSS region transcription start site region 13523
Tssr13524 1 130733850 to 130733853 3 - TSS region transcription start site region 13524
Gm28857 1 130740162 to 130741327 1165 - antisense lncRNA gene predicted gene 28857
Tssr13525 1 130741286 to 130741296 10 - TSS region transcription start site region 13525
Tssr13526 1 130764072 to 130764083 11 - TSS region transcription start site region 13526
Tssr13527 1 130764095 to 130764109 14 - TSS region transcription start site region 13527
Tssr8569 1 130764971 to 130764988 17 + TSS region transcription start site region 8569
Gm28856 1 130766384 to 130784433 18049 + lincRNA gene predicted gene 28856
Tssr13528 1 130780012 to 130780020 8 - TSS region transcription start site region 13528